Wall clock time and date at job start Tue Mar 31 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34633 * 117.00241 * 2 1 4 4 O 1.21510 * 119.99691 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00051 * 180.02562 * 3 2 1 6 6 C 1.46923 * 120.63204 * 359.97438 * 5 3 2 7 7 C 1.53191 * 108.77993 * 233.61605 * 6 5 3 8 8 C 1.53047 * 109.31010 * 305.36455 * 7 6 5 9 9 C 1.53042 * 109.53576 * 61.36613 * 8 7 6 10 10 H 1.08991 * 109.50231 * 58.61796 * 9 8 7 11 11 C 1.50706 * 109.49518 * 178.68533 * 9 8 7 12 12 O 1.20824 * 120.00104 * 359.93141 * 11 9 8 13 13 O 1.34230 * 119.99717 * 179.97438 * 11 9 8 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.46931 * 120.60396 * 180.02562 * 5 3 2 25 25 H 1.08995 * 109.47024 * 59.99521 * 1 2 3 26 26 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46835 * 300.00055 * 1 2 3 28 28 H 1.09000 * 109.58548 * 113.82474 * 6 5 3 29 29 H 1.09002 * 109.69988 * 353.47452 * 6 5 3 30 30 H 1.08994 * 109.49921 * 185.41920 * 7 6 5 31 31 H 1.08995 * 109.50078 * 65.31406 * 7 6 5 32 32 H 1.09003 * 109.46022 * 301.34941 * 8 7 6 33 33 H 1.08998 * 109.46105 * 181.38483 * 8 7 6 34 34 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 35 35 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 36 36 H 1.09002 * 109.47153 * 300.00058 * 15 14 13 37 37 H 1.08998 * 109.47533 * 59.99688 * 15 14 13 38 38 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 39 39 H 1.09006 * 109.61677 * 6.61071 * 24 5 3 40 40 H 1.08999 * 109.55879 * 246.18746 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2229 0.0467 -0.0005 7 6 5.2128 0.1129 1.1667 8 6 6.0238 1.4072 1.0698 9 6 5.0821 2.6096 1.1664 10 1 4.5365 2.5697 2.1091 11 6 5.8848 3.8836 1.1033 12 8 7.0871 3.8352 0.9937 13 8 5.2642 5.0719 1.1697 14 6 6.1005 6.2569 1.1034 15 6 5.2224 7.5066 1.1932 16 6 6.0904 8.7366 1.1250 17 1 7.1613 8.6369 1.0270 18 6 5.5174 9.9891 1.1867 19 7 6.2749 11.0625 1.1267 20 14 3.6649 10.1615 1.3541 21 1 3.2989 10.1956 2.7929 22 1 3.2238 11.4202 0.7012 23 1 2.9992 9.0056 0.7013 24 6 4.0901 2.5721 0.0000 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.7703 -0.0280 -0.9401 29 1 3.5775 -0.8239 0.1166 30 1 5.8865 -0.7427 1.1213 31 1 4.6657 0.0961 2.1092 32 1 6.5513 1.4347 0.1163 33 1 6.7460 1.4451 1.8853 34 1 6.8080 6.2492 1.9326 35 1 6.6465 6.2640 0.1601 36 1 4.5152 7.5141 0.3638 37 1 4.6760 7.4998 2.1363 38 1 5.8717 11.9436 1.1705 39 1 3.3559 3.3690 0.1191 40 1 4.6263 2.7039 -0.9398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172185021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:42 Heat of formation + Delta-G solvation = -175.403090 kcal Electronic energy + Delta-G solvation = -22733.346058 eV Core-core repulsion = 19127.209565 eV Total energy + Delta-G solvation = -3606.136494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = -0.12 seconds Orbital eigenvalues (eV) -41.05160 -40.20302 -38.31137 -36.54220 -36.17995 -33.41281 -33.25291 -31.87911 -30.64167 -28.10505 -25.89376 -25.39245 -24.28909 -22.22858 -20.90504 -20.60500 -19.89578 -18.47722 -17.46437 -17.32827 -16.82015 -16.57289 -16.22635 -15.87038 -15.05909 -14.89968 -14.42783 -14.31294 -14.21783 -13.76311 -13.49435 -13.27928 -13.07178 -12.85058 -12.41832 -12.34531 -11.87279 -11.47748 -11.41177 -11.32688 -11.28435 -11.04212 -10.96846 -10.72799 -10.69265 -10.58358 -9.97570 -9.90787 -9.71083 -9.34368 -9.12042 -8.61416 -6.12321 -4.13638 1.77404 2.40247 2.57347 3.00153 3.29922 3.37376 3.43067 3.57583 4.33836 4.40129 4.46198 4.52955 4.59914 4.85261 4.86824 4.94163 5.07242 5.09133 5.17052 5.21505 5.29802 5.41255 5.45019 5.49974 5.59003 5.80314 5.93399 5.95750 5.98485 5.99607 6.05560 6.44523 6.76126 6.99499 7.18395 7.22780 7.62929 7.99488 8.05576 8.40000 8.89063 9.47461 11.00194 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.003704 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.302438 B = 7558.586203 C = 8873.358441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.649 3.351 4 O -0.564 6.564 5 N -0.593 5.593 6 C 0.108 3.892 7 C -0.134 4.134 8 C -0.106 4.106 9 C -0.097 4.097 10 H 0.112 0.888 11 C 0.464 3.536 12 O -0.508 6.508 13 O -0.358 6.358 14 C 0.082 3.918 15 C -0.010 4.010 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.880 3.120 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.137 3.863 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.114 0.886 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -27.466 -1.626 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.452 6.452 5 N -0.334 5.334 6 C -0.014 4.014 7 C -0.172 4.172 8 C -0.144 4.144 9 C -0.117 4.117 10 H 0.130 0.870 11 C 0.305 3.695 12 O -0.397 6.397 13 O -0.274 6.274 14 C 0.010 3.990 15 C -0.048 4.048 16 C -0.566 4.566 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.707 3.293 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.187 1.187 24 C 0.015 3.985 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.921 -26.937 -1.672 28.127 hybrid contribution -0.829 0.391 0.170 0.932 sum -8.750 -26.545 -1.502 27.991 Atomic orbital electron populations 1.23209 0.74343 1.03396 1.02938 1.86209 1.24189 1.30993 1.87159 1.17999 0.83036 0.82227 0.76420 1.91047 1.64030 1.34815 1.55313 1.46837 1.02015 1.08308 1.76227 1.21818 0.93911 0.86447 0.99207 1.21958 0.98133 0.98230 0.98899 1.21457 0.96977 0.91503 1.04442 1.21424 0.97113 0.90865 1.02312 0.87006 1.23166 0.87240 0.85942 0.73138 1.90651 1.15816 1.88132 1.45062 1.86511 1.43430 1.15308 1.82149 1.23414 0.93409 0.80430 1.01769 1.19632 0.96340 0.90852 0.97938 1.20836 0.95225 0.88531 1.51961 0.90661 1.24932 0.98351 0.95561 0.94124 1.69895 1.35632 0.98004 1.50018 0.86762 0.85759 0.77941 0.78844 1.20044 1.21151 1.18652 1.21550 0.95253 0.84361 0.97293 0.91772 0.87992 0.91754 0.90763 0.88720 0.89660 0.91063 0.90424 0.90179 0.91658 0.91591 0.95277 0.95778 0.92427 0.86792 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -3.64 9.21 -40.31 -0.37 -4.01 16 3 C 0.65 8.00 8.43 54.05 0.46 8.46 16 4 O -0.56 -8.95 15.54 -19.28 -0.30 -9.25 16 5 N -0.59 -6.20 2.97 -178.58 -0.53 -6.73 16 6 C 0.11 0.77 6.44 -3.71 -0.02 0.75 16 7 C -0.13 -0.88 6.08 -26.61 -0.16 -1.04 16 8 C -0.11 -0.98 4.46 -26.68 -0.12 -1.10 16 9 C -0.10 -1.12 2.78 -91.66 -0.25 -1.38 16 10 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 11 C 0.46 7.44 7.26 36.01 0.26 7.70 16 12 O -0.51 -9.31 15.73 -18.75 -0.29 -9.61 16 13 O -0.36 -6.70 10.15 -39.26 -0.40 -7.10 16 14 C 0.08 1.75 5.40 37.16 0.20 1.95 16 15 C -0.01 -0.25 4.42 -27.89 -0.12 -0.37 16 16 C -0.53 -15.10 9.66 -34.44 -0.33 -15.43 16 17 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 20 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 24 C 0.14 1.59 5.64 -3.72 -0.02 1.57 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.59 6.93 -51.93 -0.36 0.23 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.74 8.13 -51.93 -0.42 0.31 16 33 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.07 1.40 8.13 -51.93 -0.42 0.97 16 35 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 36 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 37 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.11 1.57 7.00 -51.93 -0.36 1.21 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -34.34 334.99 -6.04 -40.38 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -6.14 Total: -3.61 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 0.85 Total: 4.59 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.24 Total: -33.52 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.36 Total: -29.96 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.34 -6.04 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172185021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.024 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.12 seconds