Wall clock time and date at job start Tue Mar 31 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34633 * 117.00241 * 2 1 4 4 O 1.21510 * 119.99691 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00051 * 180.02562 * 3 2 1 6 6 C 1.46923 * 120.63204 * 359.97438 * 5 3 2 7 7 C 1.53191 * 108.77993 * 233.61605 * 6 5 3 8 8 C 1.53047 * 109.31010 * 305.36455 * 7 6 5 9 9 C 1.53042 * 109.53576 * 61.36613 * 8 7 6 10 10 H 1.08991 * 109.50231 * 58.61796 * 9 8 7 11 11 C 1.50706 * 109.49518 * 178.68533 * 9 8 7 12 12 O 1.20824 * 120.00104 * 359.93141 * 11 9 8 13 13 O 1.34230 * 119.99717 * 179.97438 * 11 9 8 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.46931 * 120.60396 * 180.02562 * 5 3 2 25 25 H 1.08995 * 109.47024 * 59.99521 * 1 2 3 26 26 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46835 * 300.00055 * 1 2 3 28 28 H 1.09000 * 109.58548 * 113.82474 * 6 5 3 29 29 H 1.09002 * 109.69988 * 353.47452 * 6 5 3 30 30 H 1.08994 * 109.49921 * 185.41920 * 7 6 5 31 31 H 1.08995 * 109.50078 * 65.31406 * 7 6 5 32 32 H 1.09003 * 109.46022 * 301.34941 * 8 7 6 33 33 H 1.08998 * 109.46105 * 181.38483 * 8 7 6 34 34 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 35 35 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 36 36 H 1.09002 * 109.47153 * 300.00058 * 15 14 13 37 37 H 1.08998 * 109.47533 * 59.99688 * 15 14 13 38 38 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 39 39 H 1.09006 * 109.61677 * 6.61071 * 24 5 3 40 40 H 1.08999 * 109.55879 * 246.18746 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2229 0.0467 -0.0005 7 6 5.2128 0.1129 1.1667 8 6 6.0238 1.4072 1.0698 9 6 5.0821 2.6096 1.1664 10 1 4.5365 2.5697 2.1091 11 6 5.8848 3.8836 1.1033 12 8 7.0871 3.8352 0.9937 13 8 5.2642 5.0719 1.1697 14 6 6.1005 6.2569 1.1034 15 6 5.2224 7.5066 1.1932 16 6 6.0904 8.7366 1.1250 17 1 7.1613 8.6369 1.0270 18 6 5.5174 9.9891 1.1867 19 7 6.2749 11.0625 1.1267 20 14 3.6649 10.1615 1.3541 21 1 3.2989 10.1956 2.7929 22 1 3.2238 11.4202 0.7012 23 1 2.9992 9.0056 0.7013 24 6 4.0901 2.5721 0.0000 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.7703 -0.0280 -0.9401 29 1 3.5775 -0.8239 0.1166 30 1 5.8865 -0.7427 1.1213 31 1 4.6657 0.0961 2.1092 32 1 6.5513 1.4347 0.1163 33 1 6.7460 1.4451 1.8853 34 1 6.8080 6.2492 1.9326 35 1 6.6465 6.2640 0.1601 36 1 4.5152 7.5141 0.3638 37 1 4.6760 7.4998 2.1363 38 1 5.8717 11.9436 1.1705 39 1 3.3559 3.3690 0.1191 40 1 4.6263 2.7039 -0.9398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172185021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:41 Heat of formation + Delta-G solvation = -197.694102 kcal Electronic energy + Delta-G solvation = -22734.312669 eV Core-core repulsion = 19127.209565 eV Total energy + Delta-G solvation = -3607.103104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.04213 -41.40956 -39.21104 -37.78823 -37.29655 -35.42263 -34.23332 -33.00265 -32.32747 -28.75532 -27.50340 -26.27982 -25.48293 -23.16794 -22.58336 -21.86199 -20.83017 -19.43485 -19.11708 -18.28686 -18.20747 -17.73785 -17.52738 -17.18370 -16.31261 -15.99423 -15.76780 -15.21207 -15.12817 -14.85127 -14.82902 -14.52011 -14.36831 -13.89343 -13.75470 -13.34269 -13.14492 -12.95715 -12.64232 -12.51765 -12.45447 -12.13413 -12.05702 -11.84199 -11.81027 -11.79639 -11.58832 -11.56560 -11.45739 -11.38260 -10.83079 -9.94306 -8.36550 -6.44290 0.87859 1.18519 1.36106 1.37843 1.50635 1.62488 1.70014 2.32242 2.86783 2.98426 3.44109 3.56622 3.63622 3.96043 4.06942 4.09235 4.15894 4.18100 4.36202 4.38240 4.42496 4.49786 4.60900 4.61138 4.71637 4.72591 4.85547 4.99057 5.02307 5.11047 5.22877 5.26483 5.31079 5.34185 5.48557 5.53543 6.13723 6.16894 6.61668 6.64694 7.11944 7.20962 8.79505 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.003704 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.302438 B = 7558.586203 C = 8873.358441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.365 6.365 3 C 0.645 3.355 4 O -0.608 6.608 5 N -0.589 5.589 6 C 0.104 3.896 7 C -0.123 4.123 8 C -0.103 4.103 9 C -0.085 4.085 10 H 0.122 0.878 11 C 0.463 3.537 12 O -0.530 6.530 13 O -0.362 6.362 14 C 0.093 3.907 15 C -0.005 4.005 16 C -0.541 4.541 17 H 0.038 0.962 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.950 3.050 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.248 1.248 24 C 0.140 3.860 25 H 0.058 0.942 26 H 0.140 0.860 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.032 0.968 38 H 0.271 0.729 39 H 0.089 0.911 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 -30.292 -1.477 31.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.278 6.278 3 C 0.400 3.600 4 O -0.499 6.499 5 N -0.329 5.329 6 C -0.017 4.017 7 C -0.161 4.161 8 C -0.141 4.141 9 C -0.105 4.105 10 H 0.140 0.860 11 C 0.306 3.694 12 O -0.420 6.420 13 O -0.279 6.279 14 C 0.020 3.980 15 C -0.043 4.043 16 C -0.579 4.579 17 H 0.056 0.944 18 C -0.184 4.184 19 N -0.583 5.583 20 Si 0.773 3.227 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.172 1.172 24 C 0.017 3.983 25 H 0.077 0.923 26 H 0.158 0.842 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.479 -29.827 -1.522 31.334 hybrid contribution -0.258 1.188 0.107 1.220 sum -9.737 -28.639 -1.415 30.282 Atomic orbital electron populations 1.23512 0.72875 1.05713 1.02413 1.86225 1.25567 1.29323 1.86692 1.18221 0.83463 0.82344 0.75956 1.91016 1.65149 1.36395 1.57363 1.46908 1.01762 1.08859 1.75364 1.22110 0.93966 0.85297 1.00281 1.21933 0.98012 0.97469 0.98691 1.21504 0.96727 0.91570 1.04304 1.21516 0.97123 0.89073 1.02771 0.86016 1.24075 0.87431 0.86061 0.71785 1.90643 1.17042 1.88253 1.46025 1.86506 1.43111 1.15571 1.82683 1.22959 0.92788 0.80965 1.01292 1.19472 0.96014 0.90500 0.98296 1.21108 0.94242 0.90709 1.51836 0.94367 1.25899 1.03904 0.95016 0.93568 1.70031 1.38141 0.98795 1.51302 0.85658 0.79009 0.78509 0.79542 1.18762 1.20420 1.17193 1.21386 0.94627 0.84681 0.97559 0.92338 0.84191 0.92345 0.89242 0.87217 0.86789 0.90860 0.90532 0.90491 0.92205 0.92129 0.94865 0.94971 0.92006 0.89242 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -6.37 9.21 -55.42 -0.51 -6.88 16 3 C 0.65 15.10 8.43 129.79 1.09 16.20 16 4 O -0.61 -19.22 15.54 19.81 0.31 -18.92 16 5 N -0.59 -11.19 2.97 -949.31 -2.82 -14.01 16 6 C 0.10 1.13 6.44 86.36 0.56 1.69 16 7 C -0.12 -1.17 6.08 30.67 0.19 -0.98 16 8 C -0.10 -1.66 4.46 30.62 0.14 -1.52 16 9 C -0.08 -1.84 2.78 -11.47 -0.03 -1.88 16 10 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 11 C 0.46 14.59 7.26 71.24 0.52 15.11 16 12 O -0.53 -19.25 15.73 21.97 0.35 -18.91 16 13 O -0.36 -13.46 10.15 -51.42 -0.52 -13.98 16 14 C 0.09 4.02 5.40 71.98 0.39 4.41 16 15 C -0.01 -0.26 4.42 29.85 0.13 -0.13 16 16 C -0.54 -31.69 9.66 25.60 0.25 -31.44 16 17 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 18 C 0.01 0.84 5.47 84.65 0.46 1.31 16 19 N -0.94 -59.14 13.96 21.45 0.30 -58.84 16 20 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 24 C 0.14 3.10 5.64 86.35 0.49 3.59 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.11 0.93 6.93 -2.39 -0.02 0.91 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.27 8.13 -2.39 -0.02 1.25 16 33 H 0.08 1.32 8.07 -2.39 -0.02 1.30 16 34 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 35 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 36 H 0.03 1.59 7.20 -2.39 -0.02 1.57 16 37 H 0.03 1.51 7.57 -2.39 -0.02 1.49 16 38 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.09 2.47 7.00 -2.38 -0.02 2.46 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -75.82 334.99 5.33 -70.49 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.97 Total: 6.49 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.37 Total: 8.14 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -2.52 Total: -72.85 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -0.38 Total: -58.69 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -75.82 5.33 -70.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172185021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.205 kcal (2) G-P(sol) polarization free energy of solvation -75.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds