Wall clock time and date at job start Tue Mar 31 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34637 * 116.99673 * 2 1 4 4 O 1.21508 * 120.00116 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99962 * 179.97438 * 3 2 1 6 6 C 1.46494 * 119.99970 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47031 * 180.02562 * 6 5 3 8 8 C 1.53007 * 109.47309 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47049 * 179.97438 * 8 7 6 10 10 O 1.20825 * 120.00213 * 354.92788 * 9 8 7 11 11 O 1.34230 * 119.99783 * 174.93169 * 9 8 7 12 12 C 1.45209 * 116.99874 * 185.15444 * 11 9 8 13 13 C 1.52999 * 109.46586 * 184.19892 * 12 11 9 14 14 C 1.50700 * 115.54946 * 64.77392 * 13 12 11 15 15 H 1.08009 * 119.99659 * 266.64595 * 14 13 12 16 16 C 1.37874 * 120.00617 * 86.64788 * 14 13 12 17 17 N 1.31512 * 120.00477 * 178.69321 * 16 14 13 18 18 Si 1.86808 * 119.99819 * 358.69579 * 16 14 13 19 19 H 1.48501 * 109.47123 * 90.87008 * 18 16 14 20 20 H 1.48498 * 109.47087 * 210.87243 * 18 16 14 21 21 H 1.48507 * 109.46614 * 330.86963 * 18 16 14 22 22 C 1.52999 * 117.50315 * 279.09390 * 13 12 11 23 23 C 1.53005 * 117.49495 * 210.43129 * 13 12 11 24 24 H 1.08996 * 109.47315 * 300.00091 * 1 2 3 25 25 H 1.09002 * 109.47131 * 60.00305 * 1 2 3 26 26 H 1.09003 * 109.46761 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99775 * 0.02562 * 5 3 2 28 28 H 1.08997 * 109.47416 * 60.00405 * 6 5 3 29 29 H 1.09000 * 109.47220 * 299.99936 * 6 5 3 30 30 H 1.08999 * 109.47601 * 59.99836 * 7 6 5 31 31 H 1.09007 * 109.47065 * 299.99563 * 7 6 5 32 32 H 1.09005 * 109.46960 * 59.99903 * 8 7 6 33 33 H 1.08993 * 109.46827 * 299.99806 * 8 7 6 34 34 H 1.08996 * 109.46835 * 304.20189 * 12 11 9 35 35 H 1.08999 * 109.46632 * 64.20481 * 12 11 9 36 36 H 0.96999 * 120.00675 * 180.02562 * 17 16 14 37 37 H 1.08997 * 117.49936 * 0.02562 * 22 13 12 38 38 H 1.08996 * 117.49560 * 145.02616 * 22 13 12 39 39 H 1.09001 * 117.49849 * 214.97800 * 23 13 12 40 40 H 1.08996 * 117.50271 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0741 2.5756 0.0011 7 6 5.5910 2.3752 0.0010 8 6 6.2856 3.7385 0.0009 9 6 7.7795 3.5410 0.0014 10 8 8.2419 2.4286 0.0943 11 8 8.5966 4.6010 -0.1012 12 6 10.0188 4.3290 -0.2100 13 6 10.7919 5.6493 -0.2116 14 6 10.7064 6.4540 1.0597 15 1 9.9538 7.2218 1.1632 16 6 11.5887 6.2102 2.0907 17 7 11.5307 6.9298 3.1900 18 14 12.8669 4.8578 1.9260 19 1 14.1131 5.4222 1.3485 20 1 13.1569 4.2852 3.2651 21 1 12.3465 3.7910 1.0336 22 6 10.8722 6.4195 -1.5311 23 6 12.1082 5.6963 -0.9902 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9375 0.4567 0.0005 28 1 3.7810 3.1323 0.8911 29 1 3.7816 3.1328 -0.8889 30 1 5.8839 1.8186 -0.8892 31 1 5.8839 1.8178 0.8908 32 1 5.9927 4.2955 0.8910 33 1 5.9926 4.2954 -0.8890 34 1 10.3384 3.7218 0.6369 35 1 10.2159 3.7915 -1.1376 36 1 12.1517 6.7585 3.9152 37 1 10.3739 5.9858 -2.3981 38 1 10.8635 7.5082 -1.4797 39 1 12.9120 6.3097 -0.5832 40 1 12.4236 4.7865 -1.5009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174743749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:47 Heat of formation + Delta-G solvation = -148.853874 kcal Electronic energy + Delta-G solvation = -21809.458660 eV Core-core repulsion = 18204.473427 eV Total energy + Delta-G solvation = -3604.985233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68740 -40.00608 -37.48381 -37.09486 -35.85904 -35.38090 -33.05455 -32.13128 -28.71437 -27.59169 -26.48361 -25.21410 -22.68837 -21.72776 -21.63697 -20.25811 -19.18619 -18.90664 -17.38838 -17.08367 -16.95912 -16.65522 -16.32948 -15.67211 -15.31811 -14.91717 -14.66972 -14.35197 -13.87608 -13.81190 -13.12004 -12.73425 -12.64432 -12.48745 -12.40007 -12.28058 -12.09424 -11.67891 -11.18899 -11.17405 -11.06680 -10.91641 -10.90806 -10.59499 -10.32382 -10.14039 -9.98201 -9.65124 -9.52926 -9.06618 -8.62406 -8.61060 -6.14612 -4.17784 1.86675 2.53049 2.58760 3.11285 3.24919 3.35145 3.37765 3.96119 4.37173 4.53833 4.71942 4.75085 4.81036 4.86351 4.88489 5.11110 5.14165 5.24918 5.26834 5.39172 5.50596 5.62762 5.81366 5.82880 5.92572 5.94754 6.00371 6.04416 6.08936 6.25498 6.38615 6.63699 6.88472 7.04170 7.06233 7.11665 7.66097 8.01674 8.21344 8.47053 8.90128 9.47399 10.97176 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.002618 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.345507 B =10692.873478 C =10855.935231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.374 6.374 3 C 0.645 3.355 4 O -0.572 6.572 5 N -0.708 5.708 6 C 0.136 3.864 7 C -0.121 4.121 8 C -0.111 4.111 9 C 0.456 3.544 10 O -0.525 6.525 11 O -0.331 6.331 12 C 0.108 3.892 13 C -0.006 4.006 14 C -0.482 4.482 15 H 0.081 0.919 16 C 0.076 3.924 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.292 1.292 21 H -0.261 1.261 22 C -0.172 4.172 23 C -0.191 4.191 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.409 0.591 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.265 0.735 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.988 -12.382 -8.015 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.288 6.288 3 C 0.397 3.603 4 O -0.461 6.461 5 N -0.367 5.367 6 C 0.013 3.987 7 C -0.159 4.159 8 C -0.149 4.149 9 C 0.299 3.701 10 O -0.416 6.416 11 O -0.246 6.246 12 C 0.034 3.966 13 C -0.007 4.007 14 C -0.519 4.519 15 H 0.099 0.901 16 C -0.126 4.126 17 N -0.532 5.532 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.185 1.185 22 C -0.210 4.210 23 C -0.228 4.228 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.244 0.756 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.124 -12.161 -7.781 21.643 hybrid contribution 1.021 -1.136 0.084 1.530 sum -15.103 -13.297 -7.697 21.544 Atomic orbital electron populations 1.23200 0.74281 1.03480 1.02816 1.86242 1.24320 1.31135 1.87111 1.18145 0.83469 0.82194 0.76449 1.91016 1.64637 1.34881 1.55553 1.44654 1.03009 1.10943 1.78108 1.21397 0.91155 0.82671 1.03440 1.21597 0.92213 0.97193 1.04937 1.21171 0.88234 0.98954 1.06564 1.23495 0.90694 0.83227 0.72671 1.90619 1.78325 1.26210 1.46403 1.86540 1.20472 1.35963 1.81623 1.23051 0.75276 0.98430 0.99835 1.19336 0.94399 0.93328 0.93654 1.20220 1.17340 1.18686 0.95657 0.90061 1.24998 0.97081 0.95650 0.94919 1.69879 1.37673 1.39736 1.05952 0.86908 0.82306 0.83132 0.77239 1.20171 1.21834 1.18549 1.22823 1.01365 0.99320 0.97450 1.23008 0.92688 1.01838 1.05311 0.91783 0.91807 0.87961 0.75573 0.90493 0.90617 0.90156 0.89775 0.87024 0.87470 0.91300 0.93643 0.92471 0.90785 0.89119 0.88758 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.56 10.62 -40.32 -0.43 -3.99 16 3 C 0.65 7.23 8.75 54.06 0.47 7.71 16 4 O -0.57 -8.16 16.13 -19.28 -0.31 -8.47 16 5 N -0.71 -6.33 5.56 -65.28 -0.36 -6.69 16 6 C 0.14 1.18 5.67 -4.05 -0.02 1.15 16 7 C -0.12 -1.12 4.63 -26.73 -0.12 -1.24 16 8 C -0.11 -1.22 5.81 -27.88 -0.16 -1.38 16 9 C 0.46 7.66 7.94 36.00 0.29 7.94 16 10 O -0.53 -9.98 15.65 -18.75 -0.29 -10.27 16 11 O -0.33 -6.65 10.15 -39.26 -0.40 -7.05 16 12 C 0.11 2.32 4.99 37.16 0.19 2.50 16 13 C -0.01 -0.14 1.06 -155.66 -0.16 -0.31 16 14 C -0.48 -13.24 9.35 -34.44 -0.32 -13.56 16 15 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 16 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 18 Si 0.88 21.37 24.89 -169.99 -4.23 17.14 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.26 -6.07 5.74 56.52 0.32 -5.74 16 22 C -0.17 -3.41 9.96 -26.69 -0.27 -3.67 16 23 C -0.19 -3.93 7.62 -26.69 -0.20 -4.13 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.41 2.82 8.58 -40.82 -0.35 2.47 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.60 6.46 -51.93 -0.34 1.26 16 35 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.09 2.01 7.29 -51.93 -0.38 1.63 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -34.22 343.12 -5.62 -39.84 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.19 Total: 1.92 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 0.65 Total: -1.50 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.41 Total: -32.79 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.43 Total: -29.78 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.23 Total: 17.14 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.22 -5.62 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.015 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds