Wall clock time and date at job start Tue Mar 31 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34637 * 116.99673 * 2 1 4 4 O 1.21508 * 120.00116 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99962 * 179.97438 * 3 2 1 6 6 C 1.46494 * 119.99970 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47031 * 180.02562 * 6 5 3 8 8 C 1.53007 * 109.47309 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47049 * 179.97438 * 8 7 6 10 10 O 1.20825 * 120.00213 * 354.92788 * 9 8 7 11 11 O 1.34230 * 119.99783 * 174.93169 * 9 8 7 12 12 C 1.45209 * 116.99874 * 185.15444 * 11 9 8 13 13 C 1.52999 * 109.46586 * 184.19892 * 12 11 9 14 14 C 1.50700 * 115.54946 * 64.77392 * 13 12 11 15 15 H 1.08009 * 119.99659 * 266.64595 * 14 13 12 16 16 C 1.37874 * 120.00617 * 86.64788 * 14 13 12 17 17 N 1.31512 * 120.00477 * 178.69321 * 16 14 13 18 18 Si 1.86808 * 119.99819 * 358.69579 * 16 14 13 19 19 H 1.48501 * 109.47123 * 90.87008 * 18 16 14 20 20 H 1.48498 * 109.47087 * 210.87243 * 18 16 14 21 21 H 1.48507 * 109.46614 * 330.86963 * 18 16 14 22 22 C 1.52999 * 117.50315 * 279.09390 * 13 12 11 23 23 C 1.53005 * 117.49495 * 210.43129 * 13 12 11 24 24 H 1.08996 * 109.47315 * 300.00091 * 1 2 3 25 25 H 1.09002 * 109.47131 * 60.00305 * 1 2 3 26 26 H 1.09003 * 109.46761 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99775 * 0.02562 * 5 3 2 28 28 H 1.08997 * 109.47416 * 60.00405 * 6 5 3 29 29 H 1.09000 * 109.47220 * 299.99936 * 6 5 3 30 30 H 1.08999 * 109.47601 * 59.99836 * 7 6 5 31 31 H 1.09007 * 109.47065 * 299.99563 * 7 6 5 32 32 H 1.09005 * 109.46960 * 59.99903 * 8 7 6 33 33 H 1.08993 * 109.46827 * 299.99806 * 8 7 6 34 34 H 1.08996 * 109.46835 * 304.20189 * 12 11 9 35 35 H 1.08999 * 109.46632 * 64.20481 * 12 11 9 36 36 H 0.96999 * 120.00675 * 180.02562 * 17 16 14 37 37 H 1.08997 * 117.49936 * 0.02562 * 22 13 12 38 38 H 1.08996 * 117.49560 * 145.02616 * 22 13 12 39 39 H 1.09001 * 117.49849 * 214.97800 * 23 13 12 40 40 H 1.08996 * 117.50271 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0741 2.5756 0.0011 7 6 5.5910 2.3752 0.0010 8 6 6.2856 3.7385 0.0009 9 6 7.7795 3.5410 0.0014 10 8 8.2419 2.4286 0.0943 11 8 8.5966 4.6010 -0.1012 12 6 10.0188 4.3290 -0.2100 13 6 10.7919 5.6493 -0.2116 14 6 10.7064 6.4540 1.0597 15 1 9.9538 7.2218 1.1632 16 6 11.5887 6.2102 2.0907 17 7 11.5307 6.9298 3.1900 18 14 12.8669 4.8578 1.9260 19 1 14.1131 5.4222 1.3485 20 1 13.1569 4.2852 3.2651 21 1 12.3465 3.7910 1.0336 22 6 10.8722 6.4195 -1.5311 23 6 12.1082 5.6963 -0.9902 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9375 0.4567 0.0005 28 1 3.7810 3.1323 0.8911 29 1 3.7816 3.1328 -0.8889 30 1 5.8839 1.8186 -0.8892 31 1 5.8839 1.8178 0.8908 32 1 5.9927 4.2955 0.8910 33 1 5.9926 4.2954 -0.8890 34 1 10.3384 3.7218 0.6369 35 1 10.2159 3.7915 -1.1376 36 1 12.1517 6.7585 3.9152 37 1 10.3739 5.9858 -2.3981 38 1 10.8635 7.5082 -1.4797 39 1 12.9120 6.3097 -0.5832 40 1 12.4236 4.7865 -1.5009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174743749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:46 Heat of formation + Delta-G solvation = -173.289408 kcal Electronic energy + Delta-G solvation = -21810.518264 eV Core-core repulsion = 18204.473427 eV Total energy + Delta-G solvation = -3606.044837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53365 -41.35717 -38.90727 -38.04897 -37.10543 -36.53398 -34.26156 -33.94207 -29.71001 -28.73748 -27.74625 -26.94408 -23.66050 -23.28002 -22.41757 -21.45759 -21.02605 -19.69823 -18.69336 -18.48574 -17.94444 -17.80271 -17.55319 -17.12192 -16.74008 -16.11382 -15.81089 -15.33119 -15.02791 -14.88647 -14.72468 -14.36572 -14.05581 -13.78733 -13.33515 -13.25446 -13.07527 -12.96139 -12.73209 -12.53602 -12.25817 -12.04458 -11.95814 -11.82410 -11.80122 -11.71798 -11.65234 -11.36940 -10.92345 -10.65940 -10.36682 -10.28483 -8.31161 -6.38215 1.14828 1.27273 1.32390 1.36185 1.45999 1.68754 1.84507 2.33715 3.02133 3.17142 3.29712 3.64978 3.93053 3.96886 3.99917 4.14505 4.23959 4.34441 4.35306 4.37364 4.40497 4.50112 4.56070 4.64788 4.71310 4.73139 4.83317 5.03552 5.05920 5.06989 5.22675 5.25538 5.37232 5.46457 5.65980 5.69113 6.29495 6.32702 6.69734 6.84404 7.24034 7.30607 8.84486 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.002618 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.345507 B =10692.873478 C =10855.935231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.641 3.359 4 O -0.608 6.608 5 N -0.698 5.698 6 C 0.141 3.859 7 C -0.108 4.108 8 C -0.104 4.104 9 C 0.451 3.549 10 O -0.549 6.549 11 O -0.350 6.350 12 C 0.112 3.888 13 C -0.041 4.041 14 C -0.480 4.480 15 H 0.035 0.965 16 C 0.019 3.981 17 N -0.947 5.947 18 Si 0.934 3.066 19 H -0.260 1.260 20 H -0.298 1.298 21 H -0.240 1.240 22 C -0.152 4.152 23 C -0.182 4.182 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.135 0.865 27 H 0.420 0.580 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.266 0.734 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.118 -14.275 -10.074 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.290 6.290 3 C 0.394 3.606 4 O -0.500 6.500 5 N -0.358 5.358 6 C 0.018 3.982 7 C -0.146 4.146 8 C -0.142 4.142 9 C 0.296 3.704 10 O -0.440 6.440 11 O -0.266 6.266 12 C 0.039 3.961 13 C -0.042 4.042 14 C -0.518 4.518 15 H 0.053 0.947 16 C -0.179 4.179 17 N -0.587 5.587 18 Si 0.759 3.241 19 H -0.185 1.185 20 H -0.225 1.225 21 H -0.163 1.163 22 C -0.189 4.189 23 C -0.219 4.219 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.153 0.847 27 H 0.257 0.743 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.256 -14.081 -9.870 23.663 hybrid contribution 0.933 -0.509 0.720 1.284 sum -15.323 -14.590 -9.150 23.052 Atomic orbital electron populations 1.23499 0.72766 1.05619 1.02595 1.86256 1.25848 1.30113 1.86759 1.18344 0.83903 0.82205 0.76115 1.90990 1.65512 1.36102 1.57354 1.44626 1.02494 1.11588 1.77138 1.21328 0.90551 0.82640 1.03645 1.21463 0.92193 0.96085 1.04884 1.21334 0.84007 1.00506 1.08364 1.24547 0.92297 0.82203 0.71342 1.90602 1.79058 1.26898 1.47474 1.86552 1.20098 1.37686 1.82243 1.22780 0.76223 0.97062 1.00065 1.19248 0.97490 0.94488 0.92955 1.20367 1.15586 1.17834 0.97993 0.94722 1.25837 0.99493 0.98049 0.94479 1.70029 1.39313 1.42162 1.07170 0.85965 0.80120 0.80732 0.77324 1.18464 1.22544 1.16326 1.22878 1.00591 0.98944 0.96520 1.23078 0.91649 1.02988 1.04155 0.92137 0.91967 0.84657 0.74335 0.90740 0.90054 0.89660 0.90462 0.85921 0.84764 0.93696 0.90956 0.92519 0.87429 0.89852 0.89880 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.56 113.37 1.20 1.77 16 2 O -0.38 -6.65 10.62 -55.46 -0.59 -7.24 16 3 C 0.64 13.70 8.75 129.79 1.14 14.83 16 4 O -0.61 -17.00 16.13 19.82 0.32 -16.68 16 5 N -0.70 -11.37 5.56 -590.87 -3.29 -14.66 16 6 C 0.14 2.18 5.67 86.38 0.49 2.67 16 7 C -0.11 -1.77 4.63 30.60 0.14 -1.62 16 8 C -0.10 -2.07 5.81 29.85 0.17 -1.90 16 9 C 0.45 14.48 7.94 71.23 0.57 15.05 16 10 O -0.55 -20.10 15.65 21.97 0.34 -19.76 16 11 O -0.35 -13.70 10.15 -51.42 -0.52 -14.22 16 12 C 0.11 4.65 4.99 71.98 0.36 5.01 16 13 C -0.04 -1.83 1.06 -52.93 -0.06 -1.88 16 14 C -0.48 -27.00 9.35 25.60 0.24 -26.76 16 15 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 16 C 0.02 1.09 5.47 84.65 0.46 1.55 16 17 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 18 Si 0.93 43.90 24.89 68.60 1.71 45.60 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 21 H -0.24 -10.38 5.74 99.48 0.57 -9.81 16 22 C -0.15 -5.62 9.96 30.62 0.30 -5.31 16 23 C -0.18 -6.91 7.62 30.62 0.23 -6.67 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.42 5.02 8.58 -92.71 -0.80 4.22 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.40 8.04 -2.38 -0.02 1.38 16 32 H 0.12 2.23 8.14 -2.38 -0.02 2.22 16 33 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 2.04 6.46 -2.39 -0.02 2.02 16 35 H 0.07 2.57 8.09 -2.39 -0.02 2.55 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.08 3.35 7.29 -2.39 -0.02 3.33 16 40 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -76.35 343.12 3.63 -72.72 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.11 Total: 16.11 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.25 Total: -3.28 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -2.99 Total: -73.27 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -0.45 Total: -57.90 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.71 Total: 45.60 kcal Total: -76.35 3.63 -72.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.570 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds