Wall clock time and date at job start Tue Mar 31 2020 06:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99819 * 2 1 4 4 H 1.48503 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47119 * 300.00234 * 3 2 1 6 6 H 1.48502 * 109.46907 * 60.00030 * 3 2 1 7 7 C 1.38809 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00019 * 201.67464 * 7 2 1 9 9 N 1.36936 * 120.00018 * 21.66968 * 7 2 1 10 10 C 1.46499 * 119.99985 * 36.73868 * 9 7 2 11 11 C 1.50703 * 109.46837 * 89.99932 * 10 9 7 12 12 C 1.33988 * 124.91797 * 89.98852 * 11 10 9 13 13 C 1.46785 * 106.18442 * 180.02562 * 12 11 10 14 14 C 1.39400 * 134.37287 * 179.97438 * 13 12 11 15 15 C 1.36744 * 119.72010 * 180.02562 * 14 13 12 16 16 C 1.38743 * 120.41064 * 359.96476 * 15 14 13 17 17 C 1.37848 * 120.68991 * 0.02562 * 16 15 14 18 18 C 1.38939 * 119.81487 * 359.97438 * 17 16 15 19 19 O 1.34442 * 124.92181 * 270.02388 * 11 10 9 20 20 C 1.46502 * 120.00165 * 216.74355 * 9 7 2 21 21 C 1.54272 * 110.03433 * 62.20848 * 20 9 7 22 22 C 1.54963 * 104.15910 * 217.13831 * 21 20 9 23 23 C 1.54885 * 102.77861 * 37.89064 * 22 21 20 24 24 C 1.53878 * 110.03069 * 304.99466 * 20 9 7 25 25 H 0.97001 * 120.00050 * 354.92863 * 1 2 3 26 26 H 1.09003 * 109.46918 * 329.99980 * 10 9 7 27 27 H 1.08997 * 109.47013 * 210.00058 * 10 9 7 28 28 H 1.07999 * 126.91570 * 0.05433 * 12 11 10 29 29 H 1.08001 * 120.14702 * 359.97438 * 14 13 12 30 30 H 1.07999 * 119.79545 * 180.02562 * 15 14 13 31 31 H 1.08006 * 119.65261 * 180.29403 * 16 15 14 32 32 H 1.08005 * 120.09065 * 180.02562 * 17 16 15 33 33 H 1.08994 * 110.01680 * 183.60436 * 20 9 7 34 34 H 1.08999 * 110.48783 * 335.78932 * 21 20 9 35 35 H 1.08996 * 110.47993 * 98.42801 * 21 20 9 36 36 H 1.09001 * 110.72183 * 279.57606 * 22 21 20 37 37 H 1.08998 * 110.92289 * 156.29897 * 22 21 20 38 38 H 1.09000 * 110.49031 * 203.40329 * 23 22 21 39 39 H 1.09001 * 110.60425 * 80.81629 * 23 22 21 40 40 H 1.09000 * 110.03480 * 238.57458 * 24 20 9 41 41 H 1.09010 * 110.03058 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0331 -1.2352 0.3449 9 7 1.3983 -2.3459 -0.4389 10 6 0.4642 -2.2910 -1.5661 11 6 1.2181 -2.5014 -2.8540 12 6 1.4395 -3.6920 -3.4274 13 6 2.2051 -3.4212 -4.6501 14 6 2.7345 -4.2167 -5.6651 15 6 3.4177 -3.6341 -6.6964 16 6 3.5860 -2.2576 -6.7385 17 6 3.0694 -1.4549 -5.7440 18 6 2.3719 -2.0268 -4.6872 19 8 1.7666 -1.5218 -3.5936 20 6 1.6776 -3.6246 0.2193 21 6 1.2321 -3.5677 1.6952 22 6 2.3141 -4.3812 2.4494 23 6 3.6160 -3.9907 1.7067 24 6 3.1926 -3.8939 0.2265 25 1 -0.4850 0.8368 0.0743 26 1 -0.0243 -1.3168 -1.5861 27 1 -0.2876 -3.0721 -1.4534 28 1 1.1187 -4.6569 -3.0635 29 1 2.6064 -5.2887 -5.6366 30 1 3.8280 -4.2492 -7.4836 31 1 4.1236 -1.8099 -7.5614 32 1 3.2058 -0.3843 -5.7867 33 1 1.1575 -4.4314 -0.2969 34 1 1.2145 -2.5368 2.0489 35 1 0.2526 -4.0302 1.8160 36 1 2.1245 -5.4509 2.3601 37 1 2.3636 -4.0854 3.4973 38 1 4.3753 -4.7619 1.8366 39 1 3.9862 -3.0288 2.0614 40 1 3.4077 -4.8318 -0.2856 41 1 3.7201 -3.0729 -0.2594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178538315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:08 Heat of formation + Delta-G solvation = 38.818719 kcal Electronic energy + Delta-G solvation = -22726.125772 eV Core-core repulsion = 19572.420647 eV Total energy + Delta-G solvation = -3153.705125 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.75991 -37.87090 -37.39617 -34.52215 -32.33378 -31.18265 -29.99047 -29.37941 -27.89394 -26.80447 -25.70292 -22.99801 -22.19746 -21.21332 -20.30371 -19.94115 -19.14402 -16.85456 -16.70947 -16.13011 -15.46383 -15.38524 -14.79749 -14.76040 -14.19300 -13.78076 -13.45181 -13.25407 -13.05714 -12.65968 -12.55730 -12.19698 -11.88396 -11.69020 -11.27966 -11.18989 -10.92748 -10.74817 -10.53909 -10.47672 -10.37265 -10.31630 -10.10770 -10.06953 -9.90002 -9.63658 -9.52415 -8.59459 -8.19812 -7.57072 -6.71609 -5.94200 -3.46190 1.35010 1.75023 3.02213 3.32343 3.41529 3.43887 3.44523 4.08667 4.40949 4.94210 5.12051 5.17854 5.22949 5.28708 5.41675 5.44715 5.53519 5.62911 5.69940 5.72970 6.01853 6.08509 6.14092 6.23316 6.25897 6.26536 6.37746 6.43246 6.49503 6.55819 6.60164 6.60556 6.70357 6.77342 6.80876 6.93444 7.00969 7.06706 7.16364 7.30493 7.39438 7.78865 7.93148 8.42064 9.03687 9.67380 10.22205 11.09651 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.006430 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.594739 B = 4353.648434 C = 5569.814472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.019 3.981 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.561 5.561 10 C 0.196 3.804 11 C 0.078 3.922 12 C -0.256 4.256 13 C -0.117 4.117 14 C -0.084 4.084 15 C -0.144 4.144 16 C -0.115 4.115 17 C -0.105 4.105 18 C 0.039 3.961 19 O -0.181 6.181 20 C 0.170 3.830 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.133 4.133 25 H 0.258 0.742 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -7.607 -6.145 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.182 4.182 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.278 5.278 10 C 0.068 3.932 11 C 0.026 3.974 12 C -0.277 4.277 13 C -0.118 4.118 14 C -0.102 4.102 15 C -0.162 4.162 16 C -0.133 4.133 17 C -0.123 4.123 18 C -0.009 4.009 19 O -0.081 6.081 20 C 0.064 3.936 21 C -0.168 4.168 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.173 4.173 25 H 0.069 0.931 26 H 0.133 0.867 27 H 0.086 0.914 28 H 0.163 0.837 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.508 -7.159 -6.096 10.036 hybrid contribution 0.588 0.659 -0.111 0.890 sum 4.096 -6.500 -6.208 9.878 Atomic orbital electron populations 1.69851 1.05616 1.26308 1.50946 1.25159 0.95049 0.98765 0.99191 0.86321 0.79923 0.83772 0.77388 1.20020 1.21203 1.21554 1.18966 0.94935 0.84982 1.39653 0.91697 1.43926 1.51421 1.03504 1.28971 1.19983 0.89889 1.05208 0.78117 1.25054 0.93919 0.85199 0.93231 1.22058 1.09771 0.98660 0.97194 1.20049 1.01433 0.93385 0.96894 1.20184 0.97840 0.99052 0.93148 1.20617 1.01636 0.94865 0.99062 1.20735 1.00824 0.93525 0.98214 1.19911 0.99763 1.00170 0.92481 1.19809 0.99014 0.92267 0.89835 1.84178 1.57896 1.36811 1.29205 1.21116 0.92831 0.87731 0.91963 1.22790 0.96154 1.01285 0.96589 1.22441 0.96276 0.98921 0.98480 1.22247 0.96658 1.00322 0.96276 1.22548 0.98767 1.00390 0.95560 0.93150 0.86663 0.91445 0.83677 0.86331 0.86200 0.85628 0.85679 0.93153 0.89551 0.93442 0.92820 0.92748 0.93367 0.91928 0.93649 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.05 11.42 55.49 0.63 -23.42 16 2 C 0.02 0.51 4.96 -17.43 -0.09 0.42 16 3 Si 0.90 21.36 29.61 -169.99 -5.03 16.33 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.26 -6.58 7.79 -15.06 -0.12 -6.70 16 8 H 0.07 1.71 6.95 -52.48 -0.36 1.35 16 9 N -0.56 -12.98 2.37 -165.75 -0.39 -13.38 16 10 C 0.20 4.40 5.76 -5.19 -0.03 4.37 16 11 C 0.08 1.68 6.81 -35.80 -0.24 1.44 16 12 C -0.26 -4.91 11.01 -37.62 -0.41 -5.32 16 13 C -0.12 -2.17 6.40 -105.16 -0.67 -2.85 16 14 C -0.08 -1.29 10.05 -39.69 -0.40 -1.69 16 15 C -0.14 -1.93 9.98 -39.94 -0.40 -2.33 16 16 C -0.11 -1.57 10.01 -39.54 -0.40 -1.97 16 17 C -0.10 -1.72 10.07 -39.46 -0.40 -2.12 16 18 C 0.04 0.77 7.42 -38.47 -0.29 0.49 16 19 O -0.18 -4.13 10.58 3.91 0.04 -4.09 16 20 C 0.17 3.39 3.41 -66.81 -0.23 3.16 16 21 C -0.13 -2.45 6.43 -25.03 -0.16 -2.61 16 22 C -0.12 -1.96 6.91 -24.70 -0.17 -2.13 16 23 C -0.12 -1.94 6.83 -25.07 -0.17 -2.11 16 24 C -0.13 -2.49 6.14 -25.61 -0.16 -2.64 16 25 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 26 H 0.12 2.94 5.46 -51.93 -0.28 2.66 16 27 H 0.07 1.37 7.96 -51.93 -0.41 0.95 16 28 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.05 0.94 7.86 -51.93 -0.41 0.53 16 34 H 0.09 1.93 7.21 -51.93 -0.37 1.56 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.52 6.72 -51.92 -0.35 1.18 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -27.81 334.90 -10.01 -37.82 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.98 Total: 4.28 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -4.33 Total: -22.60 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.24 Total: -36.80 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: 0.04 Total: -4.09 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.81 -10.01 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178538315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.643 kcal (2) G-P(sol) polarization free energy of solvation -27.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds