Wall clock time and date at job start Tue Mar 31 2020 06:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99819 * 2 1 4 4 H 1.48503 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47119 * 300.00234 * 3 2 1 6 6 H 1.48502 * 109.46907 * 60.00030 * 3 2 1 7 7 C 1.38809 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00019 * 201.67464 * 7 2 1 9 9 N 1.36936 * 120.00018 * 21.66968 * 7 2 1 10 10 C 1.46499 * 119.99985 * 36.73868 * 9 7 2 11 11 C 1.50703 * 109.46837 * 89.99932 * 10 9 7 12 12 C 1.33988 * 124.91797 * 89.98852 * 11 10 9 13 13 C 1.46785 * 106.18442 * 180.02562 * 12 11 10 14 14 C 1.39400 * 134.37287 * 179.97438 * 13 12 11 15 15 C 1.36744 * 119.72010 * 180.02562 * 14 13 12 16 16 C 1.38743 * 120.41064 * 359.96476 * 15 14 13 17 17 C 1.37848 * 120.68991 * 0.02562 * 16 15 14 18 18 C 1.38939 * 119.81487 * 359.97438 * 17 16 15 19 19 O 1.34442 * 124.92181 * 270.02388 * 11 10 9 20 20 C 1.46502 * 120.00165 * 216.74355 * 9 7 2 21 21 C 1.54272 * 110.03433 * 62.20848 * 20 9 7 22 22 C 1.54963 * 104.15910 * 217.13831 * 21 20 9 23 23 C 1.54885 * 102.77861 * 37.89064 * 22 21 20 24 24 C 1.53878 * 110.03069 * 304.99466 * 20 9 7 25 25 H 0.97001 * 120.00050 * 354.92863 * 1 2 3 26 26 H 1.09003 * 109.46918 * 329.99980 * 10 9 7 27 27 H 1.08997 * 109.47013 * 210.00058 * 10 9 7 28 28 H 1.07999 * 126.91570 * 0.05433 * 12 11 10 29 29 H 1.08001 * 120.14702 * 359.97438 * 14 13 12 30 30 H 1.07999 * 119.79545 * 180.02562 * 15 14 13 31 31 H 1.08006 * 119.65261 * 180.29403 * 16 15 14 32 32 H 1.08005 * 120.09065 * 180.02562 * 17 16 15 33 33 H 1.08994 * 110.01680 * 183.60436 * 20 9 7 34 34 H 1.08999 * 110.48783 * 335.78932 * 21 20 9 35 35 H 1.08996 * 110.47993 * 98.42801 * 21 20 9 36 36 H 1.09001 * 110.72183 * 279.57606 * 22 21 20 37 37 H 1.08998 * 110.92289 * 156.29897 * 22 21 20 38 38 H 1.09000 * 110.49031 * 203.40329 * 23 22 21 39 39 H 1.09001 * 110.60425 * 80.81629 * 23 22 21 40 40 H 1.09000 * 110.03480 * 238.57458 * 24 20 9 41 41 H 1.09010 * 110.03058 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0331 -1.2352 0.3449 9 7 1.3983 -2.3459 -0.4389 10 6 0.4642 -2.2910 -1.5661 11 6 1.2181 -2.5014 -2.8540 12 6 1.4395 -3.6920 -3.4274 13 6 2.2051 -3.4212 -4.6501 14 6 2.7345 -4.2167 -5.6651 15 6 3.4177 -3.6341 -6.6964 16 6 3.5860 -2.2576 -6.7385 17 6 3.0694 -1.4549 -5.7440 18 6 2.3719 -2.0268 -4.6872 19 8 1.7666 -1.5218 -3.5936 20 6 1.6776 -3.6246 0.2193 21 6 1.2321 -3.5677 1.6952 22 6 2.3141 -4.3812 2.4494 23 6 3.6160 -3.9907 1.7067 24 6 3.1926 -3.8939 0.2265 25 1 -0.4850 0.8368 0.0743 26 1 -0.0243 -1.3168 -1.5861 27 1 -0.2876 -3.0721 -1.4534 28 1 1.1187 -4.6569 -3.0635 29 1 2.6064 -5.2887 -5.6366 30 1 3.8280 -4.2492 -7.4836 31 1 4.1236 -1.8099 -7.5614 32 1 3.2058 -0.3843 -5.7867 33 1 1.1575 -4.4314 -0.2969 34 1 1.2145 -2.5368 2.0489 35 1 0.2526 -4.0302 1.8160 36 1 2.1245 -5.4509 2.3601 37 1 2.3636 -4.0854 3.4973 38 1 4.3753 -4.7619 1.8366 39 1 3.9862 -3.0288 2.0614 40 1 3.4077 -4.8318 -0.2856 41 1 3.7201 -3.0729 -0.2594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178538315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:07 Heat of formation + Delta-G solvation = 26.362145 kcal Electronic energy + Delta-G solvation = -22726.665929 eV Core-core repulsion = 19572.420647 eV Total energy + Delta-G solvation = -3154.245282 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.22211 -39.41633 -38.67441 -36.20931 -33.90173 -32.92982 -31.24484 -30.84936 -29.36270 -28.35181 -27.43816 -24.61248 -23.59903 -22.55524 -21.81614 -21.31710 -20.80724 -18.49295 -18.18102 -17.61817 -17.05324 -16.90720 -16.40344 -16.12523 -15.94955 -15.09193 -15.05179 -14.72191 -14.59185 -14.09667 -13.92029 -13.77449 -13.20158 -13.11462 -13.00503 -12.80698 -12.77090 -12.28999 -12.22219 -11.99587 -11.89279 -11.76720 -11.72596 -11.69150 -11.33651 -11.21155 -10.93893 -10.56166 -9.49059 -8.96931 -8.59545 -7.92520 -5.46296 0.07617 0.49301 1.35710 1.42217 1.49070 1.54975 2.01535 2.45084 2.85206 3.20561 3.59314 3.66998 3.86073 3.98624 4.02334 4.15292 4.25872 4.30000 4.43575 4.47837 4.61605 4.67321 4.67896 4.76995 4.88264 4.93307 4.94968 4.96786 5.01013 5.18697 5.24208 5.31356 5.36674 5.42304 5.43743 5.51224 5.55076 5.60936 5.67776 5.69684 5.79673 5.94377 6.40174 6.51187 7.10164 7.79477 8.29785 9.08329 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.006430 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.594739 B = 4353.648434 C = 5569.814472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.026 4.026 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.051 0.949 9 N -0.573 5.573 10 C 0.202 3.798 11 C 0.040 3.960 12 C -0.235 4.235 13 C -0.143 4.143 14 C -0.085 4.085 15 C -0.134 4.134 16 C -0.095 4.095 17 C -0.129 4.129 18 C 0.002 3.998 19 O -0.220 6.220 20 C 0.162 3.838 21 C -0.127 4.127 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.254 0.746 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.168 0.832 29 H 0.147 0.853 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.132 0.868 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -10.428 -7.979 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.223 4.223 3 Si 0.771 3.229 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.210 1.210 7 C -0.378 4.378 8 H 0.069 0.931 9 N -0.291 5.291 10 C 0.075 3.925 11 C -0.010 4.010 12 C -0.255 4.255 13 C -0.143 4.143 14 C -0.103 4.103 15 C -0.151 4.151 16 C -0.113 4.113 17 C -0.147 4.147 18 C -0.045 4.045 19 O -0.122 6.122 20 C 0.057 3.943 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.166 4.166 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.185 0.815 29 H 0.165 0.835 30 H 0.183 0.817 31 H 0.185 0.815 32 H 0.150 0.850 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.281 -10.002 -7.932 13.815 hybrid contribution 0.127 1.439 0.229 1.463 sum 5.408 -8.563 -7.703 12.724 Atomic orbital electron populations 1.69949 1.06373 1.26229 1.52920 1.25644 0.95639 1.00815 1.00231 0.85609 0.78976 0.81422 0.76932 1.19950 1.22124 1.21027 1.18953 0.94273 0.86224 1.38337 0.93102 1.44043 1.51221 1.03923 1.29943 1.19690 0.90114 1.03740 0.79006 1.24655 0.96346 0.86065 0.93966 1.22325 1.07924 0.98440 0.96856 1.20317 1.02794 0.93347 0.97889 1.20618 0.96971 1.00334 0.92331 1.21187 0.99741 0.95142 0.99064 1.21307 0.98595 0.93768 0.97615 1.20316 1.00432 1.01286 0.92674 1.20434 1.00358 0.93575 0.90101 1.84064 1.59204 1.38127 1.30788 1.21349 0.94003 0.86661 0.92325 1.22689 0.97932 0.99539 0.96492 1.22394 0.94135 0.99871 0.98451 1.22229 0.97822 1.00467 0.94636 1.22453 0.97262 0.99903 0.97025 0.93660 0.90258 0.89925 0.81452 0.83522 0.81734 0.81496 0.85042 0.91615 0.93721 0.92673 0.90036 0.91635 0.90378 0.93759 0.91602 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.36 11.42 21.65 0.25 -52.11 16 2 C -0.03 -1.42 4.96 84.86 0.42 -1.00 16 3 Si 0.94 46.01 29.61 68.60 2.03 48.04 16 4 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.25 -13.40 7.79 84.03 0.65 -12.75 16 8 H 0.05 2.85 6.95 -2.91 -0.02 2.83 16 9 N -0.57 -27.65 2.37 -678.30 -1.61 -29.26 16 10 C 0.20 9.55 5.76 85.63 0.49 10.05 16 11 C 0.04 1.82 6.81 24.72 0.17 1.99 16 12 C -0.24 -8.97 11.01 23.54 0.26 -8.71 16 13 C -0.14 -5.17 6.40 -20.21 -0.13 -5.30 16 14 C -0.08 -2.29 10.05 22.20 0.22 -2.07 16 15 C -0.13 -2.92 9.98 22.04 0.22 -2.70 16 16 C -0.10 -2.23 10.01 22.30 0.22 -2.00 16 17 C -0.13 -4.11 10.07 22.35 0.23 -3.89 16 18 C 0.00 0.10 7.42 22.99 0.17 0.27 16 19 O -0.22 -10.63 10.58 -8.91 -0.09 -10.72 16 20 C 0.16 6.48 3.41 45.72 0.16 6.63 16 21 C -0.13 -4.84 6.43 31.70 0.20 -4.63 16 22 C -0.11 -3.29 6.91 31.91 0.22 -3.07 16 23 C -0.11 -3.60 6.83 31.67 0.22 -3.38 16 24 C -0.13 -4.67 6.14 31.32 0.19 -4.47 16 25 H 0.25 14.19 8.32 -92.71 -0.77 13.41 16 26 H 0.08 4.35 5.46 -2.39 -0.01 4.34 16 27 H 0.08 3.49 7.96 -2.39 -0.02 3.47 16 28 H 0.17 5.37 8.06 -2.91 -0.02 5.34 16 29 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 33 H 0.07 2.39 7.86 -2.39 -0.02 2.37 16 34 H 0.04 2.07 7.21 -2.39 -0.02 2.05 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.04 1.60 6.72 -2.38 -0.02 1.58 16 Total: -1.00 -65.47 334.90 5.50 -59.97 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.01 Total: 19.11 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.92 Total: -35.03 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.36 Total: -81.37 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.09 Total: -10.72 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -65.47 5.50 -59.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178538315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.331 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds