Wall clock time and date at job start Tue Mar 31 2020 06:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99631 * 2 1 4 4 H 1.48507 * 109.46844 * 269.99549 * 3 2 1 5 5 H 1.48494 * 109.47541 * 29.99942 * 3 2 1 6 6 H 1.48507 * 109.47202 * 150.00043 * 3 2 1 7 7 C 1.37871 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00064 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.47088 * 184.76847 * 9 7 2 11 11 C 1.46894 * 111.00323 * 284.06231 * 10 9 7 12 12 C 1.50697 * 109.47607 * 170.00031 * 11 10 9 13 13 C 1.34001 * 124.92302 * 90.62252 * 12 11 10 14 14 C 1.46787 * 106.18541 * 180.02562 * 13 12 11 15 15 C 1.39401 * 134.37035 * 179.31263 * 14 13 12 16 16 C 1.36739 * 119.71216 * 179.97438 * 15 14 13 17 17 C 1.38737 * 120.41991 * 0.02562 * 16 15 14 18 18 C 1.37845 * 120.68736 * 359.97438 * 17 16 15 19 19 C 1.38945 * 119.81747 * 0.27729 * 18 17 16 20 20 O 1.34446 * 124.92015 * 269.97772 * 12 11 10 21 21 C 1.46909 * 111.00023 * 160.10558 * 10 9 7 22 22 C 1.53003 * 109.47100 * 287.87263 * 21 10 9 23 23 C 1.53003 * 117.49318 * 245.32948 * 22 21 10 24 24 C 1.52998 * 117.49436 * 176.67138 * 22 21 10 25 25 H 0.97000 * 120.00132 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47505 * 64.77097 * 9 7 2 27 27 H 1.08996 * 109.47255 * 304.76790 * 9 7 2 28 28 H 1.08998 * 109.47483 * 49.99602 * 11 10 9 29 29 H 1.09007 * 109.47130 * 290.00046 * 11 10 9 30 30 H 1.08003 * 126.90522 * 359.36697 * 13 12 11 31 31 H 1.07994 * 120.14384 * 359.97438 * 15 14 13 32 32 H 1.08006 * 119.79264 * 180.02562 * 16 15 14 33 33 H 1.08000 * 119.65781 * 179.97438 * 17 16 15 34 34 H 1.08002 * 120.09444 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.46620 * 47.86979 * 21 10 9 36 36 H 1.08994 * 109.46851 * 167.86829 * 21 10 9 37 37 H 1.09000 * 115.55279 * 30.99667 * 22 21 10 38 38 H 1.09001 * 117.50263 * 359.97438 * 23 22 21 39 39 H 1.08995 * 117.49621 * 145.02163 * 23 22 21 40 40 H 1.09000 * 117.49482 * 214.97399 * 24 22 21 41 41 H 1.08997 * 117.50044 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4990 0.0005 10 7 2.2016 -3.6132 0.1163 11 6 2.8915 -3.8514 -1.1585 12 6 4.0221 -4.8242 -0.9439 13 6 3.9207 -6.1555 -1.0578 14 6 5.2541 -6.6941 -0.7634 15 6 5.7954 -7.9773 -0.7025 16 6 7.1167 -8.1413 -0.3910 17 6 7.9201 -7.0396 -0.1351 18 6 7.4024 -5.7633 -0.1906 19 6 6.0611 -5.5746 -0.5002 20 8 5.2818 -4.4814 -0.6224 21 6 1.5295 -4.8318 0.5869 22 6 1.1729 -4.6784 2.0669 23 6 1.8716 -5.6072 3.0618 24 6 0.3927 -5.8169 2.7271 25 1 -0.4850 0.8400 -0.0004 26 1 0.6905 -2.5950 -0.9293 27 1 0.5616 -2.5205 0.8444 28 1 3.2891 -2.9101 -1.5379 29 1 2.1878 -4.2657 -1.8806 30 1 3.0334 -6.7196 -1.3049 31 1 5.1740 -8.8380 -0.9005 32 1 7.5376 -9.1349 -0.3439 33 1 8.9620 -7.1834 0.1102 34 1 8.0367 -4.9124 0.0099 35 1 0.6195 -4.9913 0.0085 36 1 2.1950 -5.6857 0.4601 37 1 0.9545 -3.6621 2.3950 38 1 2.5851 -6.3278 2.6621 39 1 2.1126 -5.2021 4.0446 40 1 -0.3386 -5.5497 3.4899 41 1 0.1332 -6.6750 2.1071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178538612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:12 Heat of formation + Delta-G solvation = 58.726020 kcal Electronic energy + Delta-G solvation = -21989.080188 eV Core-core repulsion = 18836.238309 eV Total energy + Delta-G solvation = -3152.841879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.25388 -38.05948 -37.60901 -35.62183 -32.93176 -32.30375 -30.34315 -29.97580 -27.63051 -26.69088 -24.01180 -22.79391 -22.06450 -21.78919 -21.41778 -20.53377 -19.45605 -17.22526 -16.77437 -16.47059 -15.91630 -15.56837 -15.19446 -14.76667 -14.37241 -14.10919 -13.82331 -13.55084 -13.24757 -12.92084 -12.88883 -12.39607 -12.15952 -12.04781 -11.99548 -11.41231 -11.22428 -11.15531 -10.83560 -10.79559 -10.67981 -10.55014 -10.06806 -9.93684 -9.76011 -9.51763 -9.25419 -8.53541 -8.44931 -7.99995 -7.38169 -6.04667 -4.06137 0.99958 1.43003 2.52706 2.93797 3.31651 3.38216 3.43614 3.77152 4.17640 4.42353 4.53128 4.75189 4.81405 4.92927 5.19092 5.20431 5.29382 5.31022 5.33130 5.39790 5.42793 5.58466 5.67128 5.84192 5.88830 5.90680 5.93566 6.05836 6.15348 6.21027 6.23098 6.29337 6.35601 6.42048 6.44704 6.58716 6.75822 6.79724 7.11280 7.22581 7.43406 7.77931 8.00904 8.09015 8.45961 9.01660 9.58483 11.05669 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.004788 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.738266 B = 5846.411966 C = 7079.637374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.527 5.527 11 C 0.125 3.875 12 C 0.083 3.917 13 C -0.230 4.230 14 C -0.122 4.122 15 C -0.077 4.077 16 C -0.141 4.141 17 C -0.105 4.105 18 C -0.104 4.104 19 C 0.049 3.951 20 O -0.180 6.180 21 C 0.077 3.923 22 C -0.129 4.129 23 C -0.179 4.179 24 C -0.188 4.188 25 H 0.261 0.739 26 H -0.007 1.007 27 H 0.042 0.958 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.153 0.847 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.154 -15.633 -0.317 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.252 5.252 11 C -0.002 4.002 12 C 0.034 3.966 13 C -0.250 4.250 14 C -0.123 4.123 15 C -0.095 4.095 16 C -0.159 4.159 17 C -0.123 4.123 18 C -0.122 4.122 19 C 0.001 3.999 20 O -0.081 6.081 21 C -0.052 4.052 22 C -0.148 4.148 23 C -0.216 4.216 24 C -0.226 4.226 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.060 0.940 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.171 0.829 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.433 -15.078 0.072 17.785 hybrid contribution -0.306 0.569 -0.507 0.821 sum 9.127 -14.508 -0.435 17.146 Atomic orbital electron populations 1.69951 1.06028 1.26833 1.51011 1.24961 0.94833 0.99256 0.95381 0.86522 0.79901 0.83111 0.78071 1.20718 1.21281 1.19731 1.21171 0.93637 0.89802 1.50017 0.91782 1.19833 0.89987 0.86892 0.96429 1.62057 1.32100 1.05439 1.25595 1.20650 0.89517 0.97393 0.92686 1.22725 0.83439 0.94664 0.95806 1.22165 0.96901 0.93343 1.12608 1.19960 0.93889 0.94127 1.04311 1.20234 0.95145 0.94975 0.99195 1.20696 0.93786 0.98848 1.02542 1.20834 0.99861 0.91166 1.00444 1.19951 0.90522 0.98188 1.03578 1.19697 0.93200 0.84613 1.02406 1.84062 1.19073 1.32792 1.72133 1.21752 0.96554 0.93669 0.93193 1.22289 1.02467 0.96304 0.93719 1.22921 0.94581 1.03494 1.00564 1.22931 0.94617 1.01091 1.03913 0.92902 0.98955 0.93989 0.87678 0.92122 0.82946 0.85926 0.85782 0.85181 0.85227 0.95167 0.91430 0.86739 0.89457 0.89362 0.89192 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.94 8.62 -34.45 -0.30 -14.24 16 8 H 0.06 1.77 7.67 -52.49 -0.40 1.37 16 9 C 0.19 4.81 4.55 -4.98 -0.02 4.79 16 10 N -0.53 -11.06 4.37 -237.51 -1.04 -12.10 16 11 C 0.13 2.34 5.29 -4.98 -0.03 2.32 16 12 C 0.08 1.44 6.20 -35.80 -0.22 1.22 16 13 C -0.23 -3.53 9.30 -37.62 -0.35 -3.88 16 14 C -0.12 -1.83 6.40 -105.16 -0.67 -2.51 16 15 C -0.08 -0.94 10.05 -39.69 -0.40 -1.34 16 16 C -0.14 -1.48 9.98 -39.94 -0.40 -1.88 16 17 C -0.10 -1.12 10.01 -39.54 -0.40 -1.52 16 18 C -0.10 -1.36 10.07 -39.46 -0.40 -1.76 16 19 C 0.05 0.78 7.42 -38.47 -0.29 0.50 16 20 O -0.18 -3.34 10.58 3.91 0.04 -3.30 16 21 C 0.08 1.38 5.10 -3.82 -0.02 1.36 16 22 C -0.13 -2.27 5.58 -90.62 -0.51 -2.78 16 23 C -0.18 -2.70 10.18 -26.69 -0.27 -2.98 16 24 C -0.19 -2.68 10.25 -26.69 -0.27 -2.96 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H -0.01 -0.19 8.00 -51.93 -0.42 -0.61 16 27 H 0.04 1.12 6.46 -51.93 -0.34 0.78 16 28 H 0.11 2.11 7.34 -51.93 -0.38 1.73 16 29 H 0.06 1.02 8.12 -51.92 -0.42 0.60 16 30 H 0.15 2.00 7.94 -52.48 -0.42 1.58 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.07 1.12 5.23 -51.93 -0.27 0.85 16 37 H 0.11 2.31 6.88 -51.93 -0.36 1.95 16 38 H 0.09 1.29 8.04 -51.93 -0.42 0.87 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -30.00 342.24 -10.69 -40.68 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.93 Total: 2.60 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -4.63 Total: -24.15 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.30 Total: -37.50 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.00 -10.69 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178538612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.411 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds