Wall clock time and date at job start Tue Mar 31 2020 05:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00119 * 2 1 4 4 C 1.52995 * 109.47421 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47112 * 184.99952 * 4 3 2 6 6 N 1.46906 * 109.46946 * 64.99873 * 4 3 2 7 7 C 1.46901 * 110.99793 * 85.00144 * 6 4 3 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46725 * 60.00489 * 13 11 9 15 15 H 1.48505 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47116 * 300.00464 * 13 11 9 17 17 C 1.50701 * 109.47458 * 305.00056 * 4 3 2 18 18 C 1.38255 * 119.96338 * 260.00269 * 17 4 3 19 19 C 1.38210 * 120.07042 * 179.97438 * 18 17 4 20 20 C 1.38415 * 120.00144 * 359.97438 * 19 18 17 21 21 F 1.35098 * 120.03730 * 180.02562 * 20 19 18 22 22 C 1.38646 * 119.92893 * 359.97438 * 20 19 18 23 23 F 1.35101 * 120.03732 * 180.02562 * 22 20 19 24 24 C 1.38215 * 119.96564 * 79.72141 * 17 4 3 25 25 H 1.09007 * 109.47254 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47302 * 299.99933 * 1 2 3 27 27 H 1.08999 * 109.47159 * 60.00320 * 1 2 3 28 28 H 1.09008 * 109.47028 * 59.99574 * 3 2 1 29 29 H 1.08994 * 109.46944 * 299.99976 * 3 2 1 30 30 H 1.00899 * 110.99995 * 321.04542 * 6 4 3 31 31 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 32 32 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 33 33 H 1.09001 * 109.47194 * 299.99524 * 8 7 6 34 34 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 35 35 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 36 36 H 1.08001 * 119.96617 * 359.97268 * 18 17 4 37 37 H 1.08003 * 119.99912 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.99773 * 359.97438 * 24 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9778 0.5623 -1.2543 7 6 4.1207 1.5656 -2.3178 8 6 4.5811 0.8810 -3.6062 9 6 4.7271 1.9102 -4.6974 10 1 4.5133 2.9487 -4.4922 11 6 5.1347 1.5260 -5.9573 12 7 5.3955 0.2615 -6.2070 13 14 5.3149 2.8017 -7.3100 14 1 6.3190 3.8170 -6.9022 15 1 5.7620 2.1372 -8.5606 16 1 4.0067 3.4647 -7.5426 17 6 3.9714 0.3329 1.1648 18 6 4.4458 0.9301 2.3180 19 6 4.8458 0.1510 3.3872 20 6 4.7712 -1.2287 3.3044 21 9 5.1615 -1.9909 4.3493 22 6 4.2945 -1.8275 2.1484 23 9 4.2203 -3.1740 2.0654 24 6 3.8912 -1.0444 1.0807 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6885 1.8465 0.8900 29 1 1.6886 1.8463 -0.8899 30 1 3.3477 -0.1743 -1.5344 31 1 4.8580 2.3104 -2.0181 32 1 3.1608 2.0530 -2.4887 33 1 5.5409 0.3933 -3.4356 34 1 3.8435 0.1366 -3.9057 35 1 5.6826 -0.0087 -7.0933 36 1 4.5039 2.0065 2.3834 37 1 5.2166 0.6187 4.2873 38 1 3.5158 -1.5095 0.1813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181445297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:53 Heat of formation + Delta-G solvation = -117.490330 kcal Electronic energy + Delta-G solvation = -22190.249228 eV Core-core repulsion = 18475.536504 eV Total energy + Delta-G solvation = -3714.712723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.40535 -48.47866 -39.63994 -37.84658 -35.86195 -33.27216 -31.51425 -30.79964 -29.12698 -27.83957 -26.12457 -24.28503 -23.56450 -22.80414 -20.74159 -20.61777 -17.93108 -17.21217 -16.97253 -16.40724 -16.27719 -16.14457 -15.88246 -15.75148 -14.90326 -14.84325 -14.46248 -14.35092 -14.15414 -13.88599 -13.43697 -13.13036 -12.69851 -12.49435 -12.39751 -12.05909 -11.75964 -11.57682 -11.38147 -11.13552 -11.06062 -10.93815 -10.58001 -10.10471 -9.75840 -9.44886 -9.19993 -8.98671 -8.60991 -8.37279 -7.93318 -6.01267 -4.04486 0.92018 1.06545 3.31603 3.34330 3.36659 3.38355 3.68235 3.82009 4.35192 4.38979 4.51354 4.55139 4.75762 4.92776 5.03960 5.19442 5.21977 5.29026 5.34582 5.35296 5.43930 5.46366 5.58925 5.77265 5.87546 5.92580 6.01598 6.25644 6.31257 6.42827 6.77306 6.91134 7.01066 7.39428 7.68865 7.76458 7.89308 8.05171 8.39860 9.02516 9.59398 11.09998 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.003604 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.409252 B = 7767.435372 C = 8227.307616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.032 3.968 4 C 0.127 3.873 5 H 0.103 0.897 6 N -0.681 5.681 7 C 0.065 3.935 8 C 0.026 3.974 9 C -0.524 4.524 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.892 5.892 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.278 1.278 17 C -0.038 4.038 18 C -0.101 4.101 19 C -0.131 4.131 20 C 0.055 3.945 21 F -0.136 7.136 22 C 0.062 3.938 23 F -0.132 7.132 24 C -0.079 4.079 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.348 0.652 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.261 0.739 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 1.038 18.857 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C -0.046 4.046 4 C 0.016 3.984 5 H 0.121 0.879 6 N -0.312 5.312 7 C -0.062 4.062 8 C -0.012 4.012 9 C -0.563 4.563 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.039 4.039 18 C -0.120 4.120 19 C -0.150 4.150 20 C 0.035 3.965 21 F -0.114 7.114 22 C 0.042 3.958 23 F -0.111 7.111 24 C -0.098 4.098 25 H 0.104 0.896 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.167 0.833 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.293 0.676 18.893 19.925 hybrid contribution -0.974 0.678 -0.840 1.454 sum -7.267 1.354 18.053 19.508 Atomic orbital electron populations 1.22721 0.81086 1.02737 0.99794 1.87865 1.19601 1.27365 1.95353 1.23293 0.95133 0.85380 1.00794 1.20629 0.90390 0.97436 0.89966 0.87927 1.60662 1.53727 1.13929 1.02863 1.22235 0.98251 0.93637 0.92106 1.19055 0.97226 0.95761 0.89149 1.21113 1.45882 0.94087 0.95174 0.92832 1.24994 0.95401 0.95219 0.98653 1.69958 1.45921 1.15313 1.21884 0.86658 0.78455 0.81579 0.81278 1.20215 1.21260 1.20332 1.19654 0.96515 0.93139 0.94596 1.20927 0.98589 1.00371 0.92065 1.20925 1.02615 0.90616 1.00805 1.17685 1.04402 0.89657 0.84734 1.91496 1.88903 1.75582 1.55442 1.17733 1.05120 0.77797 0.95119 1.91514 1.94330 1.28650 1.96575 1.20926 0.98042 0.93464 0.97393 0.89635 0.94383 0.93990 0.93041 0.92270 0.83273 0.92140 0.96525 0.95549 0.96747 0.92890 0.84559 0.84082 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.76 8.47 -35.23 -0.30 -5.05 16 3 C 0.03 0.37 5.60 37.16 0.21 0.58 16 4 C 0.13 1.62 2.65 -68.86 -0.18 1.44 16 5 H 0.10 1.19 7.66 -51.93 -0.40 0.80 16 6 N -0.68 -11.28 5.71 -107.95 -0.62 -11.90 16 7 C 0.07 1.28 5.42 -3.82 -0.02 1.26 16 8 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 9 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 10 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 13 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.04 -0.47 4.83 -104.62 -0.51 -0.98 16 18 C -0.10 -1.04 9.66 -39.59 -0.38 -1.42 16 19 C -0.13 -1.36 10.02 -39.53 -0.40 -1.76 16 20 C 0.06 0.71 7.31 -39.37 -0.29 0.42 16 21 F -0.14 -1.82 17.18 2.25 0.04 -1.78 16 22 C 0.06 0.87 7.31 -39.37 -0.29 0.59 16 23 F -0.13 -1.99 17.18 2.25 0.04 -1.95 16 24 C -0.08 -1.09 8.29 -39.52 -0.33 -1.41 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.72 7.35 -51.93 -0.38 0.33 16 30 H 0.35 5.89 7.29 -39.29 -0.29 5.60 16 31 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 32 H 0.02 0.31 7.36 -51.93 -0.38 -0.07 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.14 1.03 8.03 -52.49 -0.42 0.60 16 37 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.15 2.14 6.98 -52.49 -0.37 1.77 16 LS Contribution 330.30 15.07 4.98 4.98 Total: -1.00 -30.53 330.30 -6.93 -37.46 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.16 Total: 0.43 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.63 Total: -12.60 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.12 Total: -37.82 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.30 Total: -5.05 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.08 Total: -3.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.53 -6.93 -37.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181445297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.031 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds