Wall clock time and date at job start Tue Mar 31 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.53003 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46837 * 175.00057 * 4 3 2 6 6 N 1.46901 * 109.47021 * 295.00250 * 4 3 2 7 7 C 1.46905 * 110.99870 * 274.99736 * 6 4 3 8 8 C 1.52993 * 109.47039 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47393 * 180.02562 * 8 7 6 10 10 H 1.08010 * 119.99765 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00736 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00590 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99710 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47209 * 89.99893 * 13 11 9 15 15 H 1.48500 * 109.47295 * 209.99804 * 13 11 9 16 16 H 1.48503 * 109.47210 * 329.99849 * 13 11 9 17 17 C 1.50693 * 109.46915 * 55.00135 * 4 3 2 18 18 C 1.38264 * 119.96632 * 279.72575 * 17 4 3 19 19 C 1.38208 * 120.06956 * 179.72653 * 18 17 4 20 20 C 1.38404 * 120.00145 * 0.54996 * 19 18 17 21 21 F 1.35108 * 120.03846 * 179.75001 * 20 19 18 22 22 C 1.38650 * 119.92995 * 359.72346 * 20 19 18 23 23 F 1.35099 * 120.03457 * 180.02562 * 22 20 19 24 24 C 1.38215 * 119.96685 * 100.00115 * 17 4 3 25 25 H 1.09004 * 109.46647 * 59.99983 * 1 2 3 26 26 H 1.08995 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47791 * 300.00281 * 1 2 3 28 28 H 1.09005 * 109.47110 * 59.99524 * 3 2 1 29 29 H 1.08996 * 109.47306 * 299.99933 * 3 2 1 30 30 H 1.00901 * 111.00067 * 38.94911 * 6 4 3 31 31 H 1.09001 * 109.46798 * 300.00327 * 7 6 4 32 32 H 1.08998 * 109.46961 * 60.00043 * 7 6 4 33 33 H 1.09001 * 109.47393 * 299.99719 * 8 7 6 34 34 H 1.08998 * 109.47408 * 60.00073 * 8 7 6 35 35 H 0.97002 * 120.00416 * 179.97438 * 12 11 9 36 36 H 1.08004 * 119.95907 * 0.02562 * 18 17 4 37 37 H 1.08002 * 119.99722 * 180.27750 * 19 18 17 38 38 H 1.07993 * 119.99758 * 0.02562 * 24 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1764 -0.0889 6 7 3.9769 0.5626 1.2562 7 6 4.1190 1.5663 2.3194 8 6 4.5796 0.8823 3.6081 9 6 4.7247 1.9118 4.6990 10 1 4.5103 2.9502 4.4936 11 6 5.1312 1.5282 5.9594 12 7 5.2584 2.4267 6.9112 13 14 5.5028 -0.2678 6.3146 14 1 6.9365 -0.5404 6.0399 15 1 5.2073 -0.5619 7.7399 16 1 4.6600 -1.1288 5.4464 17 6 3.9723 0.3323 -1.1629 18 6 3.9026 -1.0457 -1.0741 19 6 4.2974 -1.8292 -2.1420 20 6 4.7737 -1.2349 -3.2976 21 9 5.1646 -2.0003 -4.3402 22 6 4.8489 0.1468 -3.3846 23 9 5.3131 0.7291 -4.5118 24 6 4.4475 0.9289 -2.3155 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.3465 -0.1739 1.5360 31 1 4.8566 2.3108 2.0199 32 1 3.1590 2.0538 2.4894 33 1 3.8422 0.1375 3.9078 34 1 5.5396 0.3951 3.4378 35 1 5.5441 2.1567 7.7981 36 1 3.5348 -1.5101 -0.1711 37 1 4.2382 -2.9054 -2.0731 38 1 4.5060 2.0052 -2.3818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181445314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:55 Heat of formation + Delta-G solvation = -114.456262 kcal Electronic energy + Delta-G solvation = -22162.750572 eV Core-core repulsion = 18448.169416 eV Total energy + Delta-G solvation = -3714.581156 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.50818 -48.58774 -39.71855 -37.90551 -35.98197 -33.27579 -31.74214 -30.86450 -29.35696 -28.10931 -26.21614 -24.38840 -23.29884 -23.13652 -20.76357 -20.48004 -18.01211 -17.27780 -17.04209 -16.73009 -16.41575 -16.33960 -15.96980 -15.85468 -15.01197 -14.84195 -14.52586 -14.37840 -14.12166 -13.89142 -13.65805 -13.12953 -12.91458 -12.61204 -12.53336 -12.25737 -11.88683 -11.65066 -11.44612 -11.34030 -11.19781 -11.03068 -10.27561 -9.92943 -9.82241 -9.74955 -9.26805 -9.13388 -8.62997 -8.56441 -8.08359 -6.07271 -4.06110 0.87897 0.96457 3.28580 3.31453 3.38565 3.42619 3.61650 3.71712 4.18317 4.39979 4.43888 4.61049 4.64520 4.89118 4.98558 5.11226 5.16444 5.19387 5.27483 5.29535 5.33167 5.40662 5.52830 5.68546 5.71741 5.91549 6.04604 6.10136 6.19133 6.36925 6.69637 6.70161 6.91643 7.07598 7.33537 7.49740 7.67595 7.83289 8.48964 8.96153 9.55060 11.05941 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018307 B = 0.003798 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.082191 B = 7370.827205 C = 7872.287584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.032 3.968 4 C 0.128 3.872 5 H 0.103 0.897 6 N -0.683 5.683 7 C 0.073 3.927 8 C -0.009 4.009 9 C -0.522 4.522 10 H 0.071 0.929 11 C 0.068 3.932 12 N -0.904 5.904 13 Si 0.882 3.118 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.265 1.265 17 C -0.038 4.038 18 C -0.054 4.054 19 C -0.131 4.131 20 C 0.058 3.942 21 F -0.135 7.135 22 C 0.060 3.940 23 F -0.134 7.134 24 C -0.125 4.125 25 H 0.038 0.962 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.347 0.653 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.014 0.986 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 -5.957 -19.477 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.046 4.046 4 C 0.017 3.983 5 H 0.121 0.879 6 N -0.314 5.314 7 C -0.055 4.055 8 C -0.047 4.047 9 C -0.561 4.561 10 H 0.089 0.911 11 C -0.134 4.134 12 N -0.542 5.542 13 Si 0.709 3.291 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.189 1.189 17 C -0.039 4.039 18 C -0.073 4.073 19 C -0.149 4.149 20 C 0.038 3.962 21 F -0.114 7.114 22 C 0.040 3.960 23 F -0.113 7.113 24 C -0.144 4.144 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.166 0.834 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.032 0.968 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.628 -6.085 -19.518 21.493 hybrid contribution -0.747 -0.412 0.112 0.860 sum -7.375 -6.497 -19.407 21.753 Atomic orbital electron populations 1.22723 0.81031 1.02711 0.99901 1.87840 1.19633 1.27374 1.95382 1.23285 0.94945 0.85393 1.00981 1.20597 0.90517 0.97545 0.89667 0.87901 1.60653 1.53791 1.14013 1.02930 1.22036 0.98942 0.93493 0.91044 1.19533 0.96549 0.96649 0.91994 1.21046 1.45945 0.95278 0.93812 0.91134 1.24999 0.94771 0.97462 0.96127 1.69909 1.47747 1.33689 1.02891 0.86743 0.79232 0.85831 0.77250 1.20214 1.21525 1.18943 1.19631 0.96386 0.94318 0.93596 1.20927 0.95741 0.92767 0.97841 1.21098 1.00711 1.01441 0.91694 1.17696 1.04513 0.87124 0.86892 1.91503 1.88903 1.74974 1.55991 1.17550 1.03962 0.89486 0.84960 1.91505 1.86542 1.84345 1.48876 1.20905 1.00909 1.00665 0.91959 0.94327 0.89629 0.93968 0.92144 0.92937 0.83373 0.91531 0.95819 0.96784 0.95982 0.92696 0.83839 0.83968 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.30 8.52 -35.23 -0.30 -4.60 16 3 C 0.03 0.35 5.60 37.16 0.21 0.56 16 4 C 0.13 1.54 2.65 -68.87 -0.18 1.36 16 5 H 0.10 1.17 7.66 -51.93 -0.40 0.78 16 6 N -0.68 -10.31 5.70 -107.95 -0.61 -10.93 16 7 C 0.07 1.34 5.42 -3.82 -0.02 1.32 16 8 C -0.01 -0.22 4.30 -27.89 -0.12 -0.34 16 9 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 10 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 13 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 17 C -0.04 -0.45 4.83 -104.62 -0.51 -0.95 16 18 C -0.05 -0.63 8.32 -39.58 -0.33 -0.95 16 19 C -0.13 -1.43 10.02 -39.53 -0.40 -1.82 16 20 C 0.06 0.71 7.31 -39.37 -0.29 0.42 16 21 F -0.14 -1.75 17.18 2.25 0.04 -1.71 16 22 C 0.06 0.75 7.31 -39.37 -0.29 0.46 16 23 F -0.13 -1.75 17.18 2.25 0.04 -1.71 16 24 C -0.13 -1.40 9.65 -39.53 -0.38 -1.78 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.69 7.35 -51.93 -0.38 0.31 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.35 5.16 7.28 -39.29 -0.29 4.88 16 31 H 0.07 1.24 8.06 -51.93 -0.42 0.83 16 32 H 0.02 0.43 7.36 -51.93 -0.38 0.05 16 33 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 34 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 36 H 0.14 1.62 7.00 -52.48 -0.37 1.26 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.14 1.30 8.03 -52.49 -0.42 0.88 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -30.59 326.75 -6.55 -37.14 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.12 Total: 0.12 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -1.62 Total: -13.33 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.16 Total: -37.68 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.30 Total: -4.60 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.59 -6.55 -37.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181445314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.314 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds