Wall clock time and date at job start Tue Mar 31 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.53003 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46837 * 175.00057 * 4 3 2 6 6 N 1.46901 * 109.47021 * 295.00250 * 4 3 2 7 7 C 1.46905 * 110.99870 * 274.99736 * 6 4 3 8 8 C 1.52993 * 109.47039 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47393 * 180.02562 * 8 7 6 10 10 H 1.08010 * 119.99765 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00736 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00590 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99710 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47209 * 89.99893 * 13 11 9 15 15 H 1.48500 * 109.47295 * 209.99804 * 13 11 9 16 16 H 1.48503 * 109.47210 * 329.99849 * 13 11 9 17 17 C 1.50693 * 109.46915 * 55.00135 * 4 3 2 18 18 C 1.38264 * 119.96632 * 279.72575 * 17 4 3 19 19 C 1.38208 * 120.06956 * 179.72653 * 18 17 4 20 20 C 1.38404 * 120.00145 * 0.54996 * 19 18 17 21 21 F 1.35108 * 120.03846 * 179.75001 * 20 19 18 22 22 C 1.38650 * 119.92995 * 359.72346 * 20 19 18 23 23 F 1.35099 * 120.03457 * 180.02562 * 22 20 19 24 24 C 1.38215 * 119.96685 * 100.00115 * 17 4 3 25 25 H 1.09004 * 109.46647 * 59.99983 * 1 2 3 26 26 H 1.08995 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47791 * 300.00281 * 1 2 3 28 28 H 1.09005 * 109.47110 * 59.99524 * 3 2 1 29 29 H 1.08996 * 109.47306 * 299.99933 * 3 2 1 30 30 H 1.00901 * 111.00067 * 38.94911 * 6 4 3 31 31 H 1.09001 * 109.46798 * 300.00327 * 7 6 4 32 32 H 1.08998 * 109.46961 * 60.00043 * 7 6 4 33 33 H 1.09001 * 109.47393 * 299.99719 * 8 7 6 34 34 H 1.08998 * 109.47408 * 60.00073 * 8 7 6 35 35 H 0.97002 * 120.00416 * 179.97438 * 12 11 9 36 36 H 1.08004 * 119.95907 * 0.02562 * 18 17 4 37 37 H 1.08002 * 119.99722 * 180.27750 * 19 18 17 38 38 H 1.07993 * 119.99758 * 0.02562 * 24 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1764 -0.0889 6 7 3.9769 0.5626 1.2562 7 6 4.1190 1.5663 2.3194 8 6 4.5796 0.8823 3.6081 9 6 4.7247 1.9118 4.6990 10 1 4.5103 2.9502 4.4936 11 6 5.1312 1.5282 5.9594 12 7 5.2584 2.4267 6.9112 13 14 5.5028 -0.2678 6.3146 14 1 6.9365 -0.5404 6.0399 15 1 5.2073 -0.5619 7.7399 16 1 4.6600 -1.1288 5.4464 17 6 3.9723 0.3323 -1.1629 18 6 3.9026 -1.0457 -1.0741 19 6 4.2974 -1.8292 -2.1420 20 6 4.7737 -1.2349 -3.2976 21 9 5.1646 -2.0003 -4.3402 22 6 4.8489 0.1468 -3.3846 23 9 5.3131 0.7291 -4.5118 24 6 4.4475 0.9289 -2.3155 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.3465 -0.1739 1.5360 31 1 4.8566 2.3108 2.0199 32 1 3.1590 2.0538 2.4894 33 1 3.8422 0.1375 3.9078 34 1 5.5396 0.3951 3.4378 35 1 5.5441 2.1567 7.7981 36 1 3.5348 -1.5101 -0.1711 37 1 4.2382 -2.9054 -2.0731 38 1 4.5060 2.0052 -2.3818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181445314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:54 Heat of formation + Delta-G solvation = -133.540620 kcal Electronic energy + Delta-G solvation = -22163.578132 eV Core-core repulsion = 18448.169416 eV Total energy + Delta-G solvation = -3715.408716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.46739 -49.55285 -40.63917 -38.75925 -37.18606 -35.10576 -33.23912 -31.84330 -30.67879 -29.16924 -27.05849 -25.88325 -24.32872 -24.13650 -22.22019 -21.71602 -18.96143 -18.95315 -18.12552 -17.91189 -17.34850 -17.23804 -16.95726 -16.79126 -16.24492 -15.98632 -15.82895 -15.46756 -15.24524 -15.00720 -14.80790 -14.68591 -14.25576 -13.81265 -13.52280 -13.33134 -13.12284 -12.86780 -12.83854 -12.50737 -12.23555 -12.09194 -11.95337 -11.72225 -11.56877 -11.36970 -10.74494 -10.60139 -10.00931 -9.57839 -9.29521 -8.27138 -6.31143 -0.03858 0.09351 1.40678 1.40862 1.53363 2.39160 2.39369 2.78465 2.84327 3.09277 3.22148 3.46015 3.61736 3.73426 4.01771 4.11945 4.26449 4.34711 4.40174 4.42021 4.55709 4.60187 4.62025 4.67931 4.83075 4.87976 4.90592 5.00609 5.03562 5.18313 5.30310 5.48814 5.55211 5.67287 5.80860 6.08557 6.24403 6.28661 6.53550 6.78000 7.34064 8.89351 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018307 B = 0.003798 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.082191 B = 7370.827205 C = 7872.287584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.036 3.964 4 C 0.128 3.872 5 H 0.110 0.890 6 N -0.682 5.682 7 C 0.088 3.912 8 C -0.005 4.005 9 C -0.530 4.530 10 H 0.034 0.966 11 C 0.006 3.994 12 N -0.952 5.952 13 Si 0.951 3.049 14 H -0.270 1.270 15 H -0.287 1.287 16 H -0.244 1.244 17 C -0.042 4.042 18 C -0.057 4.057 19 C -0.124 4.124 20 C 0.045 3.955 21 F -0.142 7.142 22 C 0.047 3.953 23 F -0.141 7.141 24 C -0.120 4.120 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.350 0.650 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.021 0.979 35 H 0.266 0.734 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -7.596 -20.520 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.042 4.042 4 C 0.018 3.982 5 H 0.128 0.872 6 N -0.313 5.313 7 C -0.041 4.041 8 C -0.043 4.043 9 C -0.569 4.569 10 H 0.053 0.947 11 C -0.191 4.191 12 N -0.593 5.593 13 Si 0.775 3.225 14 H -0.195 1.195 15 H -0.213 1.213 16 H -0.168 1.168 17 C -0.043 4.043 18 C -0.076 4.076 19 C -0.142 4.142 20 C 0.025 3.975 21 F -0.121 7.121 22 C 0.027 3.973 23 F -0.120 7.120 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.169 0.831 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.181 -7.728 -20.595 23.139 hybrid contribution -0.621 0.168 0.398 0.756 sum -7.801 -7.559 -20.197 22.933 Atomic orbital electron populations 1.22870 0.79801 1.03731 1.00381 1.87812 1.20984 1.27395 1.95492 1.23197 0.93908 0.85591 1.01483 1.20634 0.91608 0.97778 0.88159 0.87173 1.60517 1.54614 1.13304 1.02903 1.21674 0.98579 0.93584 0.90252 1.19430 0.96688 0.95569 0.92623 1.21423 1.45081 0.94934 0.95451 0.94745 1.25968 0.94732 1.02456 0.95964 1.70061 1.49407 1.36257 1.03548 0.85644 0.79495 0.80006 0.77376 1.19540 1.21256 1.16780 1.19609 0.96748 0.94452 0.93526 1.21031 0.95658 0.92807 0.98090 1.21283 0.99621 1.02539 0.90796 1.17920 1.05094 0.87216 0.87235 1.91483 1.89073 1.75133 1.56392 1.17742 1.04636 0.89763 0.85148 1.91484 1.86744 1.84474 1.49318 1.21045 1.00002 1.01602 0.91276 0.93194 0.88425 0.94129 0.92962 0.91081 0.83052 0.92058 0.95880 0.96271 0.96095 0.92553 0.83525 0.81846 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -7.99 8.52 -148.98 -1.27 -9.26 16 3 C 0.04 0.71 5.60 71.98 0.40 1.12 16 4 C 0.13 2.83 2.65 44.17 0.12 2.95 16 5 H 0.11 2.27 7.66 -2.39 -0.02 2.25 16 6 N -0.68 -19.24 5.70 -495.45 -2.82 -22.07 16 7 C 0.09 3.14 5.42 86.30 0.47 3.61 16 8 C -0.01 -0.24 4.30 29.85 0.13 -0.11 16 9 C -0.53 -29.80 9.66 25.60 0.25 -29.56 16 10 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 11 C 0.01 0.32 5.47 84.65 0.46 0.78 16 12 N -0.95 -59.12 13.96 21.44 0.30 -58.82 16 13 Si 0.95 43.83 27.47 68.60 1.88 45.71 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 16 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 17 C -0.04 -0.90 4.83 -19.87 -0.10 -0.99 16 18 C -0.06 -1.19 8.32 22.27 0.19 -1.00 16 19 C -0.12 -2.43 10.02 22.30 0.22 -2.20 16 20 C 0.05 1.05 7.31 22.41 0.16 1.21 16 21 F -0.14 -3.53 17.18 44.97 0.77 -2.75 16 22 C 0.05 1.10 7.31 22.41 0.16 1.26 16 23 F -0.14 -3.55 17.18 44.97 0.77 -2.78 16 24 C -0.12 -2.44 9.65 22.30 0.22 -2.23 16 25 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 1.11 7.35 -2.38 -0.02 1.10 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.35 9.62 7.28 -89.69 -0.65 8.97 16 31 H 0.06 2.25 8.06 -2.39 -0.02 2.23 16 32 H 0.02 0.82 7.36 -2.39 -0.02 0.80 16 33 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 34 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.15 2.95 7.00 -2.91 -0.02 2.93 16 37 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.16 2.56 8.03 -2.91 -0.02 2.54 16 Total: -1.00 -65.58 326.75 3.93 -61.65 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.36 Total: 11.81 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 3.93 Total: -23.49 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -2.52 Total: -80.89 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -1.27 Total: -9.26 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 1.55 Total: -5.54 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -65.58 3.93 -61.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181445314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.894 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds