Wall clock time and date at job start Tue Mar 31 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47121 * 2 1 4 4 N 1.30839 * 125.88959 * 270.21277 * 3 2 1 5 5 N 1.40087 * 108.23526 * 180.25703 * 4 3 2 6 6 C 1.46494 * 126.03327 * 179.75502 * 5 4 3 7 7 C 1.34979 * 107.92708 * 359.71741 * 5 4 3 8 8 Cl 1.73606 * 126.14218 * 179.97438 * 7 5 4 9 9 C 1.35465 * 107.72064 * 0.02562 * 7 5 4 10 10 C 1.50700 * 126.05440 * 180.02562 * 9 7 5 11 11 N 1.46893 * 109.47183 * 90.01893 * 10 9 7 12 12 C 1.46904 * 110.99990 * 185.13166 * 11 10 9 13 13 H 1.08999 * 109.46589 * 325.32594 * 12 11 10 14 14 C 1.50704 * 109.47041 * 205.32935 * 12 11 10 15 15 H 1.08005 * 119.99916 * 355.15065 * 14 12 11 16 16 C 1.37880 * 120.00006 * 175.14940 * 14 12 11 17 17 N 1.31516 * 119.99731 * 352.96139 * 16 14 12 18 18 Si 1.86792 * 119.99973 * 172.95643 * 16 14 12 19 19 H 1.48501 * 109.47253 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47285 * 300.00228 * 18 16 14 21 21 H 1.48505 * 109.47348 * 60.00251 * 18 16 14 22 22 C 1.52995 * 109.47124 * 85.32870 * 12 11 10 23 23 C 1.53005 * 109.47263 * 64.47972 * 22 12 11 24 24 H 1.08998 * 109.47292 * 300.00253 * 1 2 3 25 25 H 1.09003 * 109.47199 * 60.00352 * 1 2 3 26 26 H 1.09001 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47092 * 240.00021 * 2 1 3 28 28 H 1.08995 * 109.47301 * 119.99929 * 2 1 3 29 29 H 1.09001 * 109.47428 * 269.95527 * 6 5 4 30 30 H 1.09001 * 109.47377 * 29.95743 * 6 5 4 31 31 H 1.09007 * 109.47012 * 149.95975 * 6 5 4 32 32 H 1.09003 * 109.46769 * 330.02246 * 10 9 7 33 33 H 1.09003 * 109.47141 * 210.02296 * 10 9 7 34 34 H 1.00903 * 110.99958 * 61.17766 * 11 10 9 35 35 H 0.97001 * 120.00263 * 356.31954 * 17 16 14 36 36 H 1.08997 * 109.47030 * 184.48231 * 22 12 11 37 37 H 1.09001 * 109.47070 * 304.48254 * 22 12 11 38 38 H 1.08990 * 109.46931 * 185.56275 * 23 22 12 39 39 H 1.08999 * 109.46554 * 305.56134 * 23 22 12 40 40 H 1.08999 * 109.47070 * 65.55782 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2842 2.1453 -1.0600 5 7 2.7363 3.4013 -0.6352 6 6 3.1334 4.5129 -1.5027 7 6 2.7406 3.4066 0.7146 8 17 3.2185 4.7298 1.7318 9 6 2.3061 2.1937 1.1331 10 6 2.1500 1.7534 2.5658 11 7 0.7956 2.0774 3.0329 12 6 0.6448 1.7735 4.4622 13 1 1.2333 0.8901 4.7098 14 6 -0.8072 1.5121 4.7698 15 1 -1.5541 1.6428 4.0006 16 6 -1.1822 1.1063 6.0330 17 7 -0.2649 0.8136 6.9289 18 14 -2.9928 0.9722 6.4719 19 1 -3.1287 0.5194 7.8797 20 1 -3.6399 2.2996 6.3148 21 1 -3.6495 -0.0084 5.5705 22 6 1.1357 2.9621 5.2910 23 6 0.2390 4.1734 5.0265 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.1993 4.4418 -1.7196 30 1 2.5692 4.4664 -2.4342 31 1 2.9273 5.4578 -0.9998 32 1 2.8818 2.2704 3.1866 33 1 2.3105 0.6774 2.6348 34 1 0.0990 1.5948 2.4851 35 1 0.6739 0.8316 6.6856 36 1 1.0985 2.7068 6.3500 37 1 2.1615 3.2015 5.0108 38 1 0.6457 5.0452 5.5389 39 1 0.1982 4.3680 3.9548 40 1 -0.7655 3.9696 5.3973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184094671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:51 Heat of formation + Delta-G solvation = 54.133335 kcal Electronic energy + Delta-G solvation = -21090.537192 eV Core-core repulsion = 17967.356061 eV Total energy + Delta-G solvation = -3123.181131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29386 -36.74425 -36.57853 -34.76875 -32.93394 -31.74227 -30.87578 -29.52634 -27.22962 -25.64094 -23.82407 -23.33661 -22.99254 -20.68517 -19.50037 -19.10605 -17.14951 -16.62594 -15.78489 -15.18555 -14.50111 -14.16990 -13.99206 -13.75393 -13.62116 -13.45884 -13.09179 -13.00704 -12.54810 -12.36186 -12.02369 -11.88800 -11.59246 -11.55016 -11.37719 -11.16040 -11.07510 -10.88751 -10.75012 -10.34304 -10.08180 -10.02815 -9.84354 -9.61066 -9.07668 -8.52450 -8.31873 -8.19138 -7.26123 -6.30261 -4.00547 1.57702 1.71857 2.66520 2.70691 3.45901 3.48552 3.66307 4.34132 4.55960 4.85561 4.97100 5.08085 5.21509 5.26766 5.41031 5.44517 5.46536 5.56229 5.63487 5.86021 6.00333 6.16554 6.20620 6.31211 6.39500 6.40008 6.54810 6.66790 6.70076 6.74616 7.05307 7.14278 7.36588 7.54720 7.62607 7.63407 7.95513 8.19206 8.58657 8.66504 8.92860 9.69334 11.06514 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.005301 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.192746 B = 5281.247954 C = 6234.380409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.092 3.908 4 N -0.281 5.281 5 N -0.375 5.375 6 C 0.101 3.899 7 C 0.135 3.865 8 Cl -0.002 7.002 9 C -0.189 4.189 10 C 0.132 3.868 11 N -0.671 5.671 12 C 0.205 3.795 13 H -0.008 1.008 14 C -0.590 4.590 15 H 0.052 0.948 16 C 0.025 3.975 17 N -0.911 5.911 18 Si 1.062 2.938 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.290 1.290 22 C -0.103 4.103 23 C -0.117 4.117 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.333 0.667 35 H 0.270 0.730 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.013 0.987 39 H 0.051 0.949 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.979 4.416 -14.567 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.074 4.074 4 N -0.104 5.104 5 N -0.160 5.160 6 C -0.041 4.041 7 C -0.018 4.018 8 Cl 0.026 6.974 9 C -0.201 4.201 10 C 0.002 3.998 11 N -0.303 5.303 12 C 0.097 3.903 13 H 0.009 0.991 14 C -0.629 4.629 15 H 0.070 0.930 16 C -0.180 4.180 17 N -0.547 5.547 18 Si 0.891 3.109 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.216 1.216 22 C -0.142 4.142 23 C -0.174 4.174 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.151 0.849 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.186 5.040 -14.466 16.521 hybrid contribution 1.181 -0.184 -0.409 1.263 sum 7.367 4.856 -14.875 17.295 Atomic orbital electron populations 1.21741 0.93692 1.02186 1.02792 1.19989 0.96664 0.88257 1.03304 1.22149 0.98314 0.97141 0.89798 1.77396 1.21496 0.89737 1.21762 1.48393 1.52605 1.12166 1.02817 1.21857 1.01243 0.86065 0.94896 1.21381 1.04993 0.92083 0.83365 1.98402 1.90003 1.44714 1.64261 1.19737 1.10701 0.92280 0.97383 1.20183 0.94285 0.97159 0.88199 1.60606 1.01214 1.62740 1.05706 1.19220 0.96620 0.91344 0.83110 0.99091 1.21926 0.91865 1.49547 0.99563 0.92984 1.25634 1.06026 0.93518 0.92815 1.70786 1.02421 1.45003 1.36501 0.83640 0.74666 0.76468 0.76110 1.20963 1.21470 1.21616 1.21453 0.95594 0.97018 1.00105 1.21400 1.00238 0.95240 1.00527 0.91494 0.92693 0.91865 0.90532 0.89678 0.90698 0.88987 0.89509 0.91091 0.95241 0.84890 0.91837 0.92578 0.96195 0.96777 0.92978 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 37.16 0.37 -1.51 16 2 C -0.04 -0.56 6.31 -27.89 -0.18 -0.73 16 3 C 0.09 1.42 6.47 -82.41 -0.53 0.89 16 4 N -0.28 -4.36 12.57 33.67 0.42 -3.94 16 5 N -0.37 -5.29 4.01 -64.91 -0.26 -5.55 16 6 C 0.10 0.93 11.31 59.84 0.68 1.61 16 7 C 0.13 2.09 7.45 -17.16 -0.13 1.96 16 8 Cl 0.00 -0.03 28.34 -51.86 -1.47 -1.50 16 9 C -0.19 -3.13 5.66 -105.00 -0.59 -3.72 16 10 C 0.13 2.40 5.58 -4.98 -0.03 2.37 16 11 N -0.67 -13.91 5.60 -109.22 -0.61 -14.52 16 12 C 0.21 4.95 1.93 -68.86 -0.13 4.82 16 13 H -0.01 -0.22 7.22 -51.93 -0.37 -0.60 16 14 C -0.59 -15.70 7.13 -34.44 -0.25 -15.95 16 15 H 0.05 1.40 7.67 -52.48 -0.40 1.00 16 16 C 0.02 0.68 5.26 -17.82 -0.09 0.59 16 17 N -0.91 -26.55 12.95 55.43 0.72 -25.83 16 18 Si 1.06 24.73 29.91 -169.99 -5.08 19.65 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.10 -2.42 5.51 -26.73 -0.15 -2.57 16 23 C -0.12 -2.61 9.43 37.16 0.35 -2.26 16 24 H 0.07 0.99 6.56 -51.93 -0.34 0.65 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.09 7.25 -51.93 -0.38 0.71 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.70 7.81 -51.92 -0.41 0.29 16 32 H 0.07 1.32 7.06 -51.93 -0.37 0.96 16 33 H 0.03 0.53 7.25 -51.93 -0.38 0.15 16 34 H 0.33 6.95 6.72 -39.29 -0.26 6.68 16 35 H 0.27 7.88 6.03 -40.82 -0.25 7.63 16 36 H 0.06 1.44 6.35 -51.93 -0.33 1.11 16 37 H 0.02 0.43 7.33 -51.93 -0.38 0.05 16 38 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.05 1.15 7.59 -51.93 -0.39 0.75 16 40 H 0.05 1.35 7.31 -51.93 -0.38 0.97 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -30.03 337.64 -7.85 -37.88 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.97 Total: 3.21 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.68 Total: -14.50 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.27 Total: -49.83 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.47 Total: -1.50 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.03 -7.85 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184094671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.015 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds