Wall clock time and date at job start Tue Mar 31 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47121 * 2 1 4 4 N 1.30839 * 125.88959 * 270.21277 * 3 2 1 5 5 N 1.40087 * 108.23526 * 180.25703 * 4 3 2 6 6 C 1.46494 * 126.03327 * 179.75502 * 5 4 3 7 7 C 1.34979 * 107.92708 * 359.71741 * 5 4 3 8 8 Cl 1.73606 * 126.14218 * 179.97438 * 7 5 4 9 9 C 1.35465 * 107.72064 * 0.02562 * 7 5 4 10 10 C 1.50700 * 126.05440 * 180.02562 * 9 7 5 11 11 N 1.46893 * 109.47183 * 90.01893 * 10 9 7 12 12 C 1.46904 * 110.99990 * 185.13166 * 11 10 9 13 13 H 1.08999 * 109.46589 * 325.32594 * 12 11 10 14 14 C 1.50704 * 109.47041 * 205.32935 * 12 11 10 15 15 H 1.08005 * 119.99916 * 355.15065 * 14 12 11 16 16 C 1.37880 * 120.00006 * 175.14940 * 14 12 11 17 17 N 1.31516 * 119.99731 * 352.96139 * 16 14 12 18 18 Si 1.86792 * 119.99973 * 172.95643 * 16 14 12 19 19 H 1.48501 * 109.47253 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47285 * 300.00228 * 18 16 14 21 21 H 1.48505 * 109.47348 * 60.00251 * 18 16 14 22 22 C 1.52995 * 109.47124 * 85.32870 * 12 11 10 23 23 C 1.53005 * 109.47263 * 64.47972 * 22 12 11 24 24 H 1.08998 * 109.47292 * 300.00253 * 1 2 3 25 25 H 1.09003 * 109.47199 * 60.00352 * 1 2 3 26 26 H 1.09001 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47092 * 240.00021 * 2 1 3 28 28 H 1.08995 * 109.47301 * 119.99929 * 2 1 3 29 29 H 1.09001 * 109.47428 * 269.95527 * 6 5 4 30 30 H 1.09001 * 109.47377 * 29.95743 * 6 5 4 31 31 H 1.09007 * 109.47012 * 149.95975 * 6 5 4 32 32 H 1.09003 * 109.46769 * 330.02246 * 10 9 7 33 33 H 1.09003 * 109.47141 * 210.02296 * 10 9 7 34 34 H 1.00903 * 110.99958 * 61.17766 * 11 10 9 35 35 H 0.97001 * 120.00263 * 356.31954 * 17 16 14 36 36 H 1.08997 * 109.47030 * 184.48231 * 22 12 11 37 37 H 1.09001 * 109.47070 * 304.48254 * 22 12 11 38 38 H 1.08990 * 109.46931 * 185.56275 * 23 22 12 39 39 H 1.08999 * 109.46554 * 305.56134 * 23 22 12 40 40 H 1.08999 * 109.47070 * 65.55782 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2842 2.1453 -1.0600 5 7 2.7363 3.4013 -0.6352 6 6 3.1334 4.5129 -1.5027 7 6 2.7406 3.4066 0.7146 8 17 3.2185 4.7298 1.7318 9 6 2.3061 2.1937 1.1331 10 6 2.1500 1.7534 2.5658 11 7 0.7956 2.0774 3.0329 12 6 0.6448 1.7735 4.4622 13 1 1.2333 0.8901 4.7098 14 6 -0.8072 1.5121 4.7698 15 1 -1.5541 1.6428 4.0006 16 6 -1.1822 1.1063 6.0330 17 7 -0.2649 0.8136 6.9289 18 14 -2.9928 0.9722 6.4719 19 1 -3.1287 0.5194 7.8797 20 1 -3.6399 2.2996 6.3148 21 1 -3.6495 -0.0084 5.5705 22 6 1.1357 2.9621 5.2910 23 6 0.2390 4.1734 5.0265 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.1993 4.4418 -1.7196 30 1 2.5692 4.4664 -2.4342 31 1 2.9273 5.4578 -0.9998 32 1 2.8818 2.2704 3.1866 33 1 2.3105 0.6774 2.6348 34 1 0.0990 1.5948 2.4851 35 1 0.6739 0.8316 6.6856 36 1 1.0985 2.7068 6.3500 37 1 2.1615 3.2015 5.0108 38 1 0.6457 5.0452 5.5389 39 1 0.1982 4.3680 3.9548 40 1 -0.7655 3.9696 5.3973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184094671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:51 Heat of formation + Delta-G solvation = 36.286998 kcal Electronic energy + Delta-G solvation = -21091.311067 eV Core-core repulsion = 17967.356061 eV Total energy + Delta-G solvation = -3123.955007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44790 -38.36889 -37.89830 -35.97419 -34.60184 -32.98181 -32.52513 -30.95248 -28.49452 -27.24084 -25.54279 -24.97670 -24.17195 -21.91078 -21.18677 -20.49328 -18.95334 -17.88527 -16.87930 -16.54054 -15.94555 -15.91161 -15.58093 -15.23444 -15.13373 -14.60584 -14.48603 -14.07800 -13.84781 -13.67314 -13.45334 -13.31578 -13.18578 -13.04104 -12.64984 -12.58224 -12.45109 -12.32162 -12.14764 -11.92681 -11.84578 -11.75717 -11.51573 -11.43264 -10.52511 -10.35253 -10.17762 -9.50663 -8.99304 -8.48663 -6.19102 0.41888 0.55481 1.48140 1.58236 1.64692 1.66982 1.83248 2.63144 3.29657 3.30340 3.73612 3.86217 4.09955 4.15720 4.28713 4.31626 4.42119 4.48854 4.54383 4.57481 4.63760 4.68398 4.73331 4.81926 4.94992 5.04571 5.12554 5.14173 5.27081 5.30954 5.46658 5.49316 5.60946 5.70251 5.75176 5.98443 6.19214 6.47574 6.58039 6.72102 6.91985 7.58608 8.88187 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.005301 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.192746 B = 5281.247954 C = 6234.380409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C 0.088 3.912 4 N -0.292 5.292 5 N -0.369 5.369 6 C 0.088 3.912 7 C 0.133 3.867 8 Cl 0.008 6.992 9 C -0.214 4.214 10 C 0.142 3.858 11 N -0.665 5.665 12 C 0.211 3.789 13 H -0.038 1.038 14 C -0.591 4.591 15 H 0.047 0.953 16 C -0.021 4.021 17 N -0.936 5.936 18 Si 1.105 2.895 19 H -0.289 1.289 20 H -0.276 1.276 21 H -0.272 1.272 22 C -0.097 4.097 23 C -0.105 4.105 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.332 0.668 35 H 0.258 0.742 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.827 5.238 -16.167 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.078 4.078 4 N -0.116 5.116 5 N -0.154 5.154 6 C -0.051 4.051 7 C -0.021 4.021 8 Cl 0.036 6.964 9 C -0.226 4.226 10 C 0.012 3.988 11 N -0.296 5.296 12 C 0.102 3.898 13 H -0.020 1.020 14 C -0.630 4.630 15 H 0.066 0.934 16 C -0.220 4.220 17 N -0.574 5.574 18 Si 0.928 3.072 19 H -0.215 1.215 20 H -0.201 1.201 21 H -0.198 1.198 22 C -0.136 4.136 23 C -0.162 4.162 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.150 0.850 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.049 5.879 -16.114 18.188 hybrid contribution 1.314 -0.374 0.000 1.366 sum 7.363 5.504 -16.113 18.552 Atomic orbital electron populations 1.21686 0.93623 1.02963 1.01564 1.20063 0.96608 0.87328 1.04149 1.22418 0.98086 0.97966 0.89326 1.77359 1.21962 0.90422 1.21859 1.48767 1.51302 1.12561 1.02772 1.22281 1.02793 0.85073 0.94943 1.21468 1.04347 0.92054 0.84260 1.98403 1.89841 1.44046 1.64092 1.19604 1.12984 0.93456 0.96596 1.20029 0.92381 0.97033 0.89401 1.60560 1.02730 1.62522 1.03785 1.19037 0.94961 0.90548 0.85268 1.02023 1.22170 0.92966 1.48538 0.99312 0.93446 1.26862 1.08960 0.93011 0.93154 1.70896 1.02130 1.47138 1.37191 0.83079 0.70872 0.77387 0.75840 1.21497 1.20147 1.19781 1.21337 0.96723 0.97207 0.98288 1.21267 0.98695 0.95450 1.00822 0.93907 0.92554 0.90125 0.88633 0.89835 0.88638 0.87508 0.88169 0.91760 0.95405 0.85010 0.93111 0.95170 0.94781 0.94463 0.92644 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.89 71.98 0.71 -2.77 16 2 C -0.04 -1.06 6.31 29.85 0.19 -0.87 16 3 C 0.09 2.61 6.47 43.10 0.28 2.89 16 4 N -0.29 -8.58 12.57 -47.39 -0.60 -9.17 16 5 N -0.37 -9.67 4.01 -359.26 -1.44 -11.12 16 6 C 0.09 1.40 11.31 127.77 1.44 2.84 16 7 C 0.13 3.94 7.45 83.57 0.62 4.56 16 8 Cl 0.01 0.22 28.34 -2.72 -0.08 0.14 16 9 C -0.21 -6.92 5.66 -20.11 -0.11 -7.04 16 10 C 0.14 5.15 5.58 85.56 0.48 5.62 16 11 N -0.66 -27.62 5.60 -499.47 -2.80 -30.41 16 12 C 0.21 10.33 1.93 44.17 0.09 10.42 16 13 H -0.04 -2.05 7.22 -2.39 -0.02 -2.06 16 14 C -0.59 -31.71 7.13 25.60 0.18 -31.52 16 15 H 0.05 2.55 7.67 -2.91 -0.02 2.53 16 16 C -0.02 -1.15 5.26 84.66 0.45 -0.70 16 17 N -0.94 -55.58 12.95 21.45 0.28 -55.30 16 18 Si 1.10 49.60 29.91 68.60 2.05 51.65 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 C -0.10 -4.57 5.51 30.59 0.17 -4.40 16 23 C -0.10 -4.60 9.43 71.98 0.68 -3.92 16 24 H 0.04 1.26 6.56 -2.39 -0.02 1.24 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.08 2.09 7.25 -2.39 -0.02 2.07 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.33 7.81 -2.38 -0.02 1.31 16 32 H 0.06 2.39 7.06 -2.39 -0.02 2.38 16 33 H 0.03 1.02 7.25 -2.39 -0.02 1.00 16 34 H 0.33 13.94 6.72 -89.69 -0.60 13.33 16 35 H 0.26 15.57 6.03 -92.71 -0.56 15.01 16 36 H 0.03 1.57 6.35 -2.39 -0.02 1.55 16 37 H 0.03 1.48 7.33 -2.39 -0.02 1.46 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 2.37 7.59 -2.39 -0.02 2.35 16 40 H 0.03 1.59 7.31 -2.39 -0.02 1.57 16 Total: -1.00 -63.86 337.64 3.24 -60.63 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.65 Total: 18.47 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 5.17 Total: -24.89 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -4.56 Total: -106.00 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.65 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.14 kcal Total: -63.86 3.24 -60.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184094671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.913 kcal (2) G-P(sol) polarization free energy of solvation -63.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds