Wall clock time and date at job start Tue Mar 31 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47108 * 2 1 4 4 N 1.30846 * 125.89039 * 270.21564 * 3 2 1 5 5 N 1.40081 * 108.23620 * 180.25608 * 4 3 2 6 6 C 1.46499 * 126.03437 * 179.75128 * 5 4 3 7 7 C 1.34988 * 107.92628 * 359.71712 * 5 4 3 8 8 Cl 1.73599 * 126.13887 * 179.97438 * 7 5 4 9 9 C 1.35458 * 107.71876 * 0.02562 * 7 5 4 10 10 C 1.50698 * 126.05466 * 180.02562 * 9 7 5 11 11 N 1.46896 * 109.47416 * 90.02205 * 10 9 7 12 12 C 1.46897 * 111.00579 * 185.14447 * 11 10 9 13 13 H 1.09001 * 109.47219 * 33.98641 * 12 11 10 14 14 C 1.50693 * 109.47606 * 153.99215 * 12 11 10 15 15 H 1.07997 * 119.99657 * 0.02562 * 14 12 11 16 16 C 1.37883 * 119.99903 * 179.97438 * 14 12 11 17 17 N 1.31511 * 120.00017 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99563 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47279 * 90.00374 * 18 16 14 20 20 H 1.48505 * 109.46649 * 210.00426 * 18 16 14 21 21 H 1.48496 * 109.47347 * 330.00021 * 18 16 14 22 22 C 1.53005 * 109.46711 * 273.99349 * 12 11 10 23 23 C 1.52990 * 109.47167 * 297.38224 * 22 12 11 24 24 H 1.08997 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47331 * 300.00118 * 1 2 3 26 26 H 1.09007 * 109.46975 * 60.00063 * 1 2 3 27 27 H 1.09001 * 109.46900 * 240.00174 * 2 1 3 28 28 H 1.08994 * 109.47201 * 120.00245 * 2 1 3 29 29 H 1.08998 * 109.46781 * 269.95546 * 6 5 4 30 30 H 1.09000 * 109.47156 * 29.96102 * 6 5 4 31 31 H 1.09000 * 109.46629 * 149.95600 * 6 5 4 32 32 H 1.09006 * 109.46762 * 330.02725 * 10 9 7 33 33 H 1.08996 * 109.47764 * 210.02920 * 10 9 7 34 34 H 1.00904 * 110.99958 * 309.09412 * 11 10 9 35 35 H 0.97002 * 119.99860 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47215 * 177.37826 * 22 12 11 37 37 H 1.09002 * 109.47127 * 57.38534 * 22 12 11 38 38 H 1.09000 * 109.47126 * 175.95114 * 23 22 12 39 39 H 1.09000 * 109.47783 * 55.94790 * 23 22 12 40 40 H 1.09009 * 109.47276 * 295.94786 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2843 2.1453 -1.0600 5 7 2.7363 3.4013 -0.6352 6 6 3.1335 4.5130 -1.5028 7 6 2.7406 3.4066 0.7146 8 17 3.2186 4.7298 1.7317 9 6 2.3062 2.1937 1.1330 10 6 2.1501 1.7533 2.5658 11 7 0.7956 2.0772 3.0329 12 6 0.6449 1.7735 4.4622 13 1 1.5882 1.9614 4.9751 14 6 -0.4305 2.6496 5.0514 15 1 -0.9503 3.3606 4.4264 16 6 -0.7514 2.5426 6.3880 17 7 -0.1187 1.6764 7.1489 18 14 -2.0849 3.6281 7.1181 19 1 -3.3980 2.9440 7.0034 20 1 -1.7845 3.8862 8.5493 21 1 -2.1322 4.9169 6.3820 22 6 0.2557 0.3037 4.6329 23 6 -1.0999 0.0546 3.9688 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.1993 4.4417 -1.7196 30 1 2.5692 4.4665 -2.4342 31 1 2.9273 5.4578 -0.9999 32 1 2.8819 2.2704 3.1865 33 1 2.3107 0.6774 2.6348 34 1 0.5684 3.0417 2.8424 35 1 -0.3448 1.6009 8.0892 36 1 0.1893 0.0663 5.6946 37 1 1.0107 -0.3287 4.1659 38 1 -1.3438 -1.0061 4.0274 39 1 -1.0540 0.3597 2.9234 40 1 -1.8679 0.6329 4.4827 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184094688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:54 Heat of formation + Delta-G solvation = 57.597283 kcal Electronic energy + Delta-G solvation = -21069.861772 eV Core-core repulsion = 17946.830849 eV Total energy + Delta-G solvation = -3123.030923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25112 -36.79021 -36.31786 -34.60443 -32.84335 -31.65252 -30.84364 -29.40179 -27.19152 -25.95953 -23.92795 -23.01354 -22.93790 -20.56116 -19.45429 -18.88986 -16.99878 -16.15291 -15.74379 -15.12646 -14.73345 -14.22835 -13.91119 -13.60607 -13.52132 -13.35570 -12.96526 -12.80745 -12.51342 -12.33386 -12.02617 -11.84221 -11.54601 -11.41171 -11.32787 -11.00142 -10.89717 -10.82110 -10.68683 -10.35691 -10.28072 -10.03817 -9.64555 -9.27925 -9.03288 -8.73113 -8.42700 -8.23120 -7.12321 -5.96848 -4.01198 1.56996 1.72579 2.67993 2.77328 3.32213 3.39011 3.41906 4.38740 4.45076 4.93037 4.99512 5.19273 5.24178 5.34532 5.38297 5.52018 5.64429 5.73770 5.74805 5.96330 6.15257 6.30611 6.33518 6.45524 6.60122 6.61581 6.75045 6.78289 6.81876 6.95359 7.31810 7.38949 7.57957 7.69173 7.81979 7.86101 7.91751 8.33133 8.47544 8.74619 9.08509 9.63119 11.09107 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.005397 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.639826 B = 5186.815638 C = 6202.380369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C 0.105 3.895 4 N -0.283 5.283 5 N -0.375 5.375 6 C 0.101 3.899 7 C 0.118 3.882 8 Cl -0.006 7.006 9 C -0.187 4.187 10 C 0.133 3.867 11 N -0.675 5.675 12 C 0.216 3.784 13 H 0.000 1.000 14 C -0.509 4.509 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.100 4.100 23 C -0.119 4.119 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.329 0.671 35 H 0.259 0.741 36 H 0.083 0.917 37 H 0.010 0.990 38 H 0.011 0.989 39 H 0.048 0.952 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 1.952 -14.324 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 C -0.061 4.061 4 N -0.106 5.106 5 N -0.160 5.160 6 C -0.040 4.040 7 C -0.035 4.035 8 Cl 0.022 6.978 9 C -0.199 4.199 10 C 0.003 3.997 11 N -0.306 5.306 12 C 0.109 3.891 13 H 0.018 0.982 14 C -0.547 4.547 15 H 0.075 0.925 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.139 4.139 23 C -0.176 4.176 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.067 0.933 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.370 1.593 -15.592 16.918 hybrid contribution -0.069 1.684 1.765 2.441 sum 6.301 3.277 -13.827 15.544 Atomic orbital electron populations 1.21748 0.93573 1.01871 1.03320 1.19939 0.96918 0.87921 1.02880 1.22135 0.97352 0.97224 0.89405 1.77416 1.21628 0.89660 1.21889 1.48378 1.52695 1.12213 1.02671 1.21846 1.01232 0.86050 0.94895 1.21499 1.05950 0.92304 0.83704 1.98407 1.90256 1.44959 1.64204 1.19838 1.10151 0.91969 0.97965 1.20231 0.92209 1.00194 0.87082 1.60769 1.21664 1.27038 1.21159 1.19137 0.95368 0.93362 0.81271 0.98210 1.21176 1.19747 1.19861 0.93943 0.92456 1.24853 0.96353 0.95456 0.97070 1.69888 1.41473 1.35225 1.06178 0.86630 0.82353 0.80960 0.78237 1.20694 1.21420 1.20085 1.21400 0.94473 0.96628 1.01349 1.21457 0.99000 0.96622 1.00538 0.92410 0.89948 0.93364 0.91106 0.89563 0.90738 0.89001 0.89579 0.95373 0.90832 0.85392 0.93073 0.89871 0.97115 0.97004 0.93318 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.89 37.16 0.37 -1.62 16 2 C -0.04 -0.50 6.31 -27.88 -0.18 -0.67 16 3 C 0.10 1.64 6.47 -82.40 -0.53 1.10 16 4 N -0.28 -4.42 12.57 33.67 0.42 -3.99 16 5 N -0.37 -5.26 4.01 -64.91 -0.26 -5.52 16 6 C 0.10 0.94 11.31 59.85 0.68 1.61 16 7 C 0.12 1.81 7.45 -17.16 -0.13 1.68 16 8 Cl -0.01 -0.09 28.34 -51.86 -1.47 -1.56 16 9 C -0.19 -3.08 5.56 -105.01 -0.58 -3.66 16 10 C 0.13 2.41 5.67 -4.98 -0.03 2.38 16 11 N -0.68 -13.84 5.61 -109.23 -0.61 -14.45 16 12 C 0.22 5.22 2.31 -68.87 -0.16 5.07 16 13 H 0.00 0.01 7.70 -51.93 -0.40 -0.39 16 14 C -0.51 -13.43 7.28 -34.44 -0.25 -13.68 16 15 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -24.86 11.35 55.43 0.63 -24.23 16 18 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.10 -2.35 5.57 -26.73 -0.15 -2.50 16 23 C -0.12 -2.60 9.46 37.15 0.35 -2.25 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 1.32 7.21 -51.93 -0.37 0.95 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.13 7.25 -51.93 -0.38 0.75 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.69 7.81 -51.93 -0.41 0.28 16 32 H 0.03 0.53 7.69 -51.93 -0.40 0.13 16 33 H 0.07 1.31 6.69 -51.93 -0.35 0.96 16 34 H 0.33 6.96 8.12 -39.29 -0.32 6.64 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.08 2.20 6.14 -51.93 -0.32 1.88 16 37 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.05 1.01 6.63 -51.93 -0.34 0.67 16 40 H 0.05 1.23 7.30 -51.92 -0.38 0.85 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -28.73 340.19 -8.02 -36.75 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.13 Total: 2.70 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -0.71 Total: -10.91 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.18 Total: -48.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.47 Total: -1.56 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.73 -8.02 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184094688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.347 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds