Wall clock time and date at job start Tue Mar 31 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47108 * 2 1 4 4 N 1.30846 * 125.89039 * 270.21564 * 3 2 1 5 5 N 1.40081 * 108.23620 * 180.25608 * 4 3 2 6 6 C 1.46499 * 126.03437 * 179.75128 * 5 4 3 7 7 C 1.34988 * 107.92628 * 359.71712 * 5 4 3 8 8 Cl 1.73599 * 126.13887 * 179.97438 * 7 5 4 9 9 C 1.35458 * 107.71876 * 0.02562 * 7 5 4 10 10 C 1.50698 * 126.05466 * 180.02562 * 9 7 5 11 11 N 1.46896 * 109.47416 * 90.02205 * 10 9 7 12 12 C 1.46897 * 111.00579 * 185.14447 * 11 10 9 13 13 H 1.09001 * 109.47219 * 33.98641 * 12 11 10 14 14 C 1.50693 * 109.47606 * 153.99215 * 12 11 10 15 15 H 1.07997 * 119.99657 * 0.02562 * 14 12 11 16 16 C 1.37883 * 119.99903 * 179.97438 * 14 12 11 17 17 N 1.31511 * 120.00017 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99563 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47279 * 90.00374 * 18 16 14 20 20 H 1.48505 * 109.46649 * 210.00426 * 18 16 14 21 21 H 1.48496 * 109.47347 * 330.00021 * 18 16 14 22 22 C 1.53005 * 109.46711 * 273.99349 * 12 11 10 23 23 C 1.52990 * 109.47167 * 297.38224 * 22 12 11 24 24 H 1.08997 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47331 * 300.00118 * 1 2 3 26 26 H 1.09007 * 109.46975 * 60.00063 * 1 2 3 27 27 H 1.09001 * 109.46900 * 240.00174 * 2 1 3 28 28 H 1.08994 * 109.47201 * 120.00245 * 2 1 3 29 29 H 1.08998 * 109.46781 * 269.95546 * 6 5 4 30 30 H 1.09000 * 109.47156 * 29.96102 * 6 5 4 31 31 H 1.09000 * 109.46629 * 149.95600 * 6 5 4 32 32 H 1.09006 * 109.46762 * 330.02725 * 10 9 7 33 33 H 1.08996 * 109.47764 * 210.02920 * 10 9 7 34 34 H 1.00904 * 110.99958 * 309.09412 * 11 10 9 35 35 H 0.97002 * 119.99860 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47215 * 177.37826 * 22 12 11 37 37 H 1.09002 * 109.47127 * 57.38534 * 22 12 11 38 38 H 1.09000 * 109.47126 * 175.95114 * 23 22 12 39 39 H 1.09000 * 109.47783 * 55.94790 * 23 22 12 40 40 H 1.09009 * 109.47276 * 295.94786 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2843 2.1453 -1.0600 5 7 2.7363 3.4013 -0.6352 6 6 3.1335 4.5130 -1.5028 7 6 2.7406 3.4066 0.7146 8 17 3.2186 4.7298 1.7317 9 6 2.3062 2.1937 1.1330 10 6 2.1501 1.7533 2.5658 11 7 0.7956 2.0772 3.0329 12 6 0.6449 1.7735 4.4622 13 1 1.5882 1.9614 4.9751 14 6 -0.4305 2.6496 5.0514 15 1 -0.9503 3.3606 4.4264 16 6 -0.7514 2.5426 6.3880 17 7 -0.1187 1.6764 7.1489 18 14 -2.0849 3.6281 7.1181 19 1 -3.3980 2.9440 7.0034 20 1 -1.7845 3.8862 8.5493 21 1 -2.1322 4.9169 6.3820 22 6 0.2557 0.3037 4.6329 23 6 -1.0999 0.0546 3.9688 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.1993 4.4417 -1.7196 30 1 2.5692 4.4665 -2.4342 31 1 2.9273 5.4578 -0.9999 32 1 2.8819 2.2704 3.1865 33 1 2.3107 0.6774 2.6348 34 1 0.5684 3.0417 2.8424 35 1 -0.3448 1.6009 8.0892 36 1 0.1893 0.0663 5.6946 37 1 1.0107 -0.3287 4.1659 38 1 -1.3438 -1.0061 4.0274 39 1 -1.0540 0.3597 2.9234 40 1 -1.8679 0.6329 4.4827 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184094688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:53 Heat of formation + Delta-G solvation = 40.792161 kcal Electronic energy + Delta-G solvation = -21070.590497 eV Core-core repulsion = 17946.830849 eV Total energy + Delta-G solvation = -3123.759648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40575 -38.07703 -37.93371 -35.79100 -34.52818 -33.03331 -32.32649 -30.84280 -28.59097 -27.48145 -25.49437 -24.70599 -24.11268 -21.78008 -20.90787 -20.49700 -18.46274 -17.74261 -16.91584 -16.72417 -16.26522 -15.53203 -15.46968 -15.08313 -15.01607 -14.50668 -14.35748 -13.93148 -13.87062 -13.68558 -13.40132 -13.37682 -12.91253 -12.78660 -12.65384 -12.58048 -12.46003 -12.32475 -12.20356 -11.99278 -11.84607 -11.57011 -11.41130 -11.11592 -10.70760 -10.47144 -10.14218 -9.48624 -8.85219 -8.03361 -6.13876 0.41303 0.55994 1.43424 1.45316 1.53101 1.55804 1.68671 2.46810 3.25737 3.35864 3.93476 3.95592 4.08975 4.25412 4.33169 4.43733 4.57897 4.58960 4.64493 4.73793 4.81937 4.86612 4.92208 5.01530 5.08863 5.17755 5.27670 5.38123 5.50596 5.53411 5.62801 5.67492 5.73780 5.80315 5.93485 6.03253 6.37199 6.53484 6.58647 6.88289 7.10445 7.54204 9.01438 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.005397 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.639826 B = 5186.815638 C = 6202.380369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 C 0.100 3.900 4 N -0.295 5.295 5 N -0.369 5.369 6 C 0.089 3.911 7 C 0.118 3.882 8 Cl 0.003 6.997 9 C -0.211 4.211 10 C 0.143 3.857 11 N -0.664 5.664 12 C 0.224 3.776 13 H -0.035 1.035 14 C -0.518 4.518 15 H 0.053 0.947 16 C 0.020 3.980 17 N -0.915 5.915 18 Si 0.947 3.053 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.271 1.271 22 C -0.095 4.095 23 C -0.106 4.106 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.017 0.983 33 H 0.075 0.925 34 H 0.325 0.675 35 H 0.259 0.741 36 H 0.053 0.947 37 H 0.025 0.975 38 H 0.032 0.968 39 H 0.058 0.942 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 2.264 -15.895 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.066 4.066 4 N -0.119 5.119 5 N -0.154 5.154 6 C -0.050 4.050 7 C -0.036 4.036 8 Cl 0.031 6.969 9 C -0.224 4.224 10 C 0.013 3.987 11 N -0.294 5.294 12 C 0.115 3.885 13 H -0.018 1.018 14 C -0.556 4.556 15 H 0.071 0.929 16 C -0.179 4.179 17 N -0.554 5.554 18 Si 0.774 3.226 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.196 1.196 22 C -0.133 4.133 23 C -0.164 4.164 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.035 0.965 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.225 1.916 -17.198 18.390 hybrid contribution 0.056 1.646 2.187 2.737 sum 6.281 3.561 -15.011 16.658 Atomic orbital electron populations 1.21662 0.93629 1.02637 1.01847 1.20020 0.96725 0.87027 1.03851 1.22406 0.97164 0.98045 0.88947 1.77378 1.22122 0.90352 1.22014 1.48748 1.51389 1.12600 1.02635 1.22263 1.02738 0.85086 0.94953 1.21574 1.05252 0.92250 0.84547 1.98410 1.90104 1.44361 1.64054 1.19689 1.12407 0.93117 0.97148 1.20075 0.90325 1.00113 0.88183 1.60708 1.23528 1.26598 1.18565 1.18921 0.93074 0.93616 0.82842 1.01782 1.21416 1.20020 1.19982 0.94199 0.92908 1.25525 0.98203 0.96591 0.97550 1.70018 1.42692 1.36440 1.06280 0.85725 0.79983 0.79519 0.77395 1.20345 1.21297 1.19600 1.21265 0.95964 0.96332 0.99781 1.21313 0.96992 0.97591 1.00455 0.90543 0.92650 0.93434 0.89218 0.89467 0.88742 0.87519 0.88239 0.96488 0.90683 0.85864 0.93183 0.92833 0.95641 0.94874 0.92272 0.95488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.89 71.98 0.71 -2.84 16 2 C -0.04 -0.93 6.31 29.85 0.19 -0.74 16 3 C 0.10 2.99 6.47 43.10 0.28 3.27 16 4 N -0.29 -8.69 12.57 -47.39 -0.60 -9.29 16 5 N -0.37 -9.69 4.01 -359.27 -1.44 -11.13 16 6 C 0.09 1.42 11.31 127.77 1.44 2.87 16 7 C 0.12 3.48 7.45 83.56 0.62 4.10 16 8 Cl 0.00 0.07 28.34 -2.72 -0.08 0.00 16 9 C -0.21 -6.80 5.56 -20.11 -0.11 -6.91 16 10 C 0.14 5.17 5.67 85.56 0.48 5.66 16 11 N -0.66 -27.33 5.61 -499.48 -2.80 -30.13 16 12 C 0.22 11.01 2.31 44.17 0.10 11.11 16 13 H -0.04 -1.96 7.70 -2.39 -0.02 -1.98 16 14 C -0.52 -27.62 7.28 25.60 0.19 -27.43 16 15 H 0.05 2.81 7.60 -2.91 -0.02 2.79 16 16 C 0.02 1.11 5.30 84.66 0.45 1.56 16 17 N -0.91 -51.99 11.35 21.45 0.24 -51.75 16 18 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 C -0.09 -4.48 5.57 30.59 0.17 -4.31 16 23 C -0.11 -4.58 9.46 71.98 0.68 -3.90 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.71 7.21 -2.39 -0.02 1.70 16 26 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 2.15 7.25 -2.39 -0.02 2.14 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 1.34 7.81 -2.39 -0.02 1.32 16 32 H 0.02 0.65 7.69 -2.38 -0.02 0.64 16 33 H 0.07 2.66 6.69 -2.39 -0.02 2.65 16 34 H 0.32 13.82 8.12 -89.69 -0.73 13.09 16 35 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 36 H 0.05 2.87 6.14 -2.39 -0.01 2.86 16 37 H 0.02 1.09 7.56 -2.39 -0.02 1.08 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 2.40 6.63 -2.39 -0.02 2.39 16 40 H 0.03 1.26 7.30 -2.38 -0.02 1.25 16 Total: -1.00 -61.16 340.19 2.87 -58.29 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.31 Total: 16.14 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 5.21 Total: -17.57 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -4.60 Total: -102.30 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -0.08 Total: 0.00 kcal Total: -61.16 2.87 -58.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184094688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.078 kcal (2) G-P(sol) polarization free energy of solvation -61.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds