Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47086 * 269.99767 * 3 2 1 5 5 H 1.48494 * 109.47104 * 30.00141 * 3 2 1 6 6 H 1.48498 * 109.46946 * 150.00098 * 3 2 1 7 7 C 1.37874 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99482 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00572 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47237 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47035 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47089 * 185.04306 * 11 10 9 13 13 C 1.49258 * 110.99916 * 284.63802 * 12 11 10 14 14 C 1.54039 * 102.51009 * 209.50395 * 13 12 11 15 15 H 1.09001 * 111.84826 * 268.58217 * 14 13 12 16 16 C 1.52944 * 113.31202 * 141.18414 * 14 13 12 17 17 C 1.53383 * 109.00567 * 190.12162 * 16 14 13 18 18 C 1.52586 * 111.32035 * 58.61933 * 17 16 14 19 19 O 1.21251 * 120.22540 * 153.44094 * 18 17 16 20 20 C 1.46553 * 119.45898 * 333.11087 * 18 17 16 21 21 C 1.39130 * 127.04966 * 177.68073 * 20 18 17 22 22 C 1.38432 * 119.81680 * 185.41691 * 21 20 18 23 23 C 1.39121 * 123.13917 * 1.75749 * 22 21 20 24 24 C 1.38747 * 111.00198 * 164.60098 * 12 11 10 25 25 C 1.38931 * 116.34942 * 358.86219 * 20 18 17 26 26 H 0.97004 * 119.99700 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47184 * 59.99478 * 9 7 2 28 28 H 1.09001 * 109.47000 * 299.99911 * 9 7 2 29 29 H 1.08990 * 109.47340 * 59.99697 * 10 9 7 30 30 H 1.09000 * 109.46514 * 299.99424 * 10 9 7 31 31 H 1.08994 * 109.47627 * 65.03943 * 11 10 9 32 32 H 1.08997 * 109.46827 * 305.03930 * 11 10 9 33 33 H 1.09004 * 110.79944 * 91.24749 * 13 12 11 34 34 H 1.09008 * 110.80040 * 327.76048 * 13 12 11 35 35 H 1.08997 * 109.56573 * 310.01219 * 16 14 13 36 36 H 1.09006 * 109.56560 * 70.23784 * 16 14 13 37 37 H 1.09001 * 108.96126 * 178.80991 * 17 16 14 38 38 H 1.09002 * 108.96064 * 297.47127 * 17 16 14 39 39 H 1.08003 * 120.09528 * 5.39335 * 21 20 18 40 40 H 1.07998 * 118.43201 * 181.78775 * 22 21 20 41 41 H 1.07991 * 121.17628 * 178.22179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6365 -0.0001 12 7 6.0414 -4.0159 -0.1232 13 6 5.8866 -4.7553 1.1641 14 6 7.0470 -5.7670 1.1093 15 1 6.7406 -6.7117 0.6601 16 6 7.7305 -5.9778 2.4612 17 6 9.0122 -6.7936 2.2511 18 6 9.9667 -6.0898 1.2910 19 8 11.1604 -6.2907 1.3603 20 6 9.4280 -5.1753 0.2804 21 6 10.1511 -4.4213 -0.6385 22 6 9.4945 -3.5172 -1.4556 23 6 8.1242 -3.2865 -1.3876 24 6 7.3848 -4.0376 -0.4694 25 6 8.0465 -5.0300 0.2540 26 1 -0.4850 0.8401 -0.0004 27 1 3.8746 -0.6807 0.8905 28 1 3.8752 -0.6796 -0.8895 29 1 3.6586 -3.1494 -0.8919 30 1 3.6580 -3.1512 0.8880 31 1 5.9143 -2.2040 0.9323 32 1 5.9156 -2.0454 -0.8405 33 1 4.9262 -5.2695 1.2021 34 1 6.0002 -4.0816 2.0135 35 1 7.9805 -5.0112 2.8985 36 1 7.0594 -6.5179 3.1292 37 1 9.5097 -6.9253 3.2120 38 1 8.7472 -7.7736 1.8541 39 1 11.2219 -4.5407 -0.7138 40 1 10.0735 -2.9649 -2.1809 41 1 7.6487 -2.5527 -2.0214 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184785154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = -27.301259 kcal Electronic energy + Delta-G solvation = -21897.585777 eV Core-core repulsion = 18741.013475 eV Total energy + Delta-G solvation = -3156.572302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.38500 -40.17381 -37.79524 -36.77765 -35.56771 -33.79228 -31.60170 -30.94997 -30.29845 -28.12852 -25.70731 -24.91599 -23.65017 -22.84626 -21.76377 -21.67320 -20.02848 -18.89075 -17.70929 -17.27667 -17.05233 -16.61324 -16.28310 -16.17801 -15.93681 -15.58168 -15.44039 -14.81740 -14.50449 -14.42153 -14.02312 -13.94997 -13.67163 -13.35666 -13.18378 -13.00727 -12.79782 -12.60974 -12.44876 -12.16716 -12.03451 -11.89686 -11.76240 -11.60680 -11.45032 -11.36384 -10.93511 -10.75550 -10.64231 -9.84804 -8.69538 -8.28468 -6.32754 -0.41364 0.29366 1.33885 1.37172 1.38747 1.50429 2.36963 2.51501 2.81422 2.92583 3.07124 3.40053 3.50185 3.80277 3.92462 4.03470 4.08140 4.17040 4.22211 4.26330 4.31628 4.39542 4.47039 4.55182 4.61677 4.67969 4.75099 4.83776 4.85909 4.93004 4.99428 5.02196 5.09663 5.22540 5.25282 5.28879 5.43689 5.50789 5.57660 5.63153 5.67266 5.90044 6.19671 6.30187 6.41884 6.75868 7.31978 8.88455 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.003499 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.587661 B = 8001.252324 C = 8605.931156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.031 0.969 9 C -0.010 4.010 10 C -0.086 4.086 11 C 0.060 3.940 12 N -0.486 5.486 13 C 0.051 3.949 14 C -0.060 4.060 15 H 0.117 0.883 16 C -0.100 4.100 17 C -0.151 4.151 18 C 0.404 3.596 19 O -0.494 6.494 20 C -0.149 4.149 21 C -0.099 4.099 22 C -0.106 4.106 23 C -0.114 4.114 24 C 0.080 3.920 25 C -0.112 4.112 26 H 0.266 0.734 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.032 -11.438 2.962 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.570 4.570 8 H 0.049 0.951 9 C -0.048 4.048 10 C -0.124 4.124 11 C -0.065 4.065 12 N -0.199 5.199 13 C -0.074 4.074 14 C -0.078 4.078 15 H 0.135 0.865 16 C -0.137 4.137 17 C -0.188 4.188 18 C 0.285 3.715 19 O -0.373 6.373 20 C -0.151 4.151 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.135 4.135 24 C -0.019 4.019 25 C -0.116 4.116 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.169 0.831 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 21.089 -11.660 2.663 24.244 hybrid contribution -0.128 1.195 0.071 1.204 sum 20.960 -10.465 2.734 23.587 Atomic orbital electron populations 1.70078 1.08392 1.28151 1.52790 1.26051 0.95613 1.03633 0.94161 0.85637 0.79556 0.78111 0.79213 1.19189 1.21140 1.16722 1.21496 0.92222 0.93038 1.50217 0.95092 1.19491 0.93819 0.94879 0.96620 1.21252 0.92880 0.97092 1.01183 1.22355 0.95866 0.86659 1.01641 1.60190 1.13618 1.15723 1.30362 1.23595 1.00279 0.95123 0.88422 1.21098 0.91816 0.98832 0.96034 0.86490 1.21602 0.95389 1.01081 0.95653 1.22309 0.95554 1.00827 1.00075 1.23217 0.88783 0.77311 0.82177 1.90503 1.19587 1.57540 1.69622 1.19665 0.92910 1.02490 1.00013 1.21163 1.00553 0.95477 0.94671 1.21322 0.93645 0.98014 0.99413 1.21413 0.93527 1.00155 0.98415 1.19847 0.88465 0.96352 0.97228 1.21223 0.93695 0.98075 0.98559 0.92535 0.96021 0.96234 0.93157 0.92867 0.93071 0.90149 0.87760 0.91185 0.91644 0.87283 0.87227 0.85950 0.84626 0.83095 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 2 C 0.00 0.11 5.47 84.65 0.46 0.57 16 3 Si 0.95 43.51 27.47 68.60 1.88 45.39 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 7 C -0.53 -30.33 9.66 25.60 0.25 -30.09 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.17 5.22 30.60 0.16 -3.01 16 11 C 0.06 1.75 4.85 86.30 0.42 2.17 16 12 N -0.49 -12.72 4.97 -686.57 -3.41 -16.13 16 13 C 0.05 1.06 5.97 86.20 0.51 1.57 16 14 C -0.06 -1.01 3.45 -11.18 -0.04 -1.05 16 15 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 16 C -0.10 -1.22 5.34 30.70 0.16 -1.05 16 17 C -0.15 -1.94 6.00 30.59 0.18 -1.75 16 18 C 0.40 8.53 7.14 28.46 0.20 8.73 16 19 O -0.49 -13.40 17.70 -2.94 -0.05 -13.45 16 20 C -0.15 -3.33 5.87 -20.73 -0.12 -3.45 16 21 C -0.10 -2.11 9.86 22.53 0.22 -1.88 16 22 C -0.11 -2.03 9.89 22.53 0.22 -1.80 16 23 C -0.11 -2.51 9.64 22.86 0.22 -2.29 16 24 C 0.08 1.98 5.96 38.73 0.23 2.21 16 25 C -0.11 -2.46 5.49 -19.36 -0.11 -2.57 16 26 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 27 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 28 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.95 7.85 -2.39 -0.02 1.94 16 31 H 0.05 1.42 7.71 -2.39 -0.02 1.40 16 32 H 0.08 2.25 6.96 -2.39 -0.02 2.24 16 33 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.07 1.41 7.45 -2.38 -0.02 1.39 16 35 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 36 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 40 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.14 2.85 7.50 -2.92 -0.02 2.82 16 Total: -1.00 -70.61 330.33 2.78 -67.83 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.96 Total: 9.79 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 3.10 Total: -34.03 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -3.11 Total: -75.53 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.05 Total: -13.45 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Total: -70.61 2.78 -67.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184785154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.530 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds