Wall clock time and date at job start Tue Mar 31 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00084 * 2 1 4 4 H 1.48503 * 109.46905 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47343 * 300.00572 * 3 2 1 6 6 H 1.48499 * 109.46678 * 60.00611 * 3 2 1 7 7 C 1.37877 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99598 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47052 * 180.02562 * 10 9 7 12 12 N 1.46909 * 109.46840 * 179.97438 * 11 10 9 13 13 C 1.50127 * 110.54422 * 50.40658 * 12 11 10 14 14 C 1.54107 * 102.10606 * 265.41784 * 13 12 11 15 15 H 1.08998 * 111.93600 * 91.51972 * 14 13 12 16 16 C 1.52982 * 113.14355 * 218.95376 * 14 13 12 17 17 C 1.53370 * 108.94413 * 169.48469 * 16 14 13 18 18 C 1.51181 * 112.03381 * 301.69290 * 17 16 14 19 19 O 1.21253 * 120.35329 * 206.21620 * 18 17 16 20 20 C 1.46552 * 119.28617 * 26.49561 * 18 17 16 21 21 C 1.39189 * 126.96383 * 182.78556 * 20 18 17 22 22 C 1.38427 * 119.83560 * 174.82998 * 21 20 18 23 23 C 1.39121 * 123.13252 * 358.45429 * 22 21 20 24 24 C 1.38787 * 110.99612 * 290.11990 * 12 11 10 25 25 C 1.38553 * 109.79188 * 107.03836 * 24 12 11 26 26 H 0.97005 * 119.99712 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47208 * 60.00169 * 9 7 2 28 28 H 1.08999 * 109.47195 * 299.99946 * 9 7 2 29 29 H 1.08994 * 109.47721 * 59.99568 * 10 9 7 30 30 H 1.09009 * 109.46935 * 299.99858 * 10 9 7 31 31 H 1.08996 * 109.47291 * 59.99606 * 11 10 9 32 32 H 1.08999 * 109.46878 * 299.99427 * 11 10 9 33 33 H 1.08997 * 110.72488 * 147.42297 * 13 12 11 34 34 H 1.09003 * 111.27903 * 23.65251 * 13 12 11 35 35 H 1.09000 * 109.55615 * 49.64631 * 16 14 13 36 36 H 1.08999 * 109.55902 * 289.32866 * 16 14 13 37 37 H 1.09005 * 108.96365 * 181.03726 * 17 16 14 38 38 H 1.09000 * 108.96955 * 62.35804 * 17 16 14 39 39 H 1.08008 * 120.07663 * 354.56610 * 21 20 18 40 40 H 1.07997 * 118.43350 * 178.43317 * 22 21 20 41 41 H 1.07992 * 121.17641 * 182.19878 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 3.4582 -5.9224 1.0815 14 6 4.6110 -5.2339 0.3252 15 1 4.5355 -4.1475 0.3695 16 6 5.9931 -5.7259 0.7588 17 6 7.0435 -5.1857 -0.2195 18 6 6.7689 -5.6179 -1.6420 19 8 7.6763 -5.7068 -2.4413 20 6 5.3934 -5.9222 -2.0460 21 6 4.9686 -6.3823 -3.2890 22 6 3.6411 -6.7254 -3.4795 23 6 2.6875 -6.6650 -2.4683 24 6 3.0967 -6.1914 -1.2185 25 6 4.4060 -5.7624 -1.0723 26 1 -0.4850 0.8401 -0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 2.8719 -3.6044 0.8893 30 1 2.8719 -3.6043 -0.8906 31 1 0.8537 -5.0445 -0.8913 32 1 0.8533 -5.0451 0.8886 33 1 3.7764 -6.8871 1.4769 34 1 3.0812 -5.2816 1.8786 35 1 6.0120 -6.8157 0.7494 36 1 6.2104 -5.3643 1.7639 37 1 8.0262 -5.5512 0.0785 38 1 7.0434 -4.0966 -0.1737 39 1 5.6721 -6.4674 -4.1041 40 1 3.3308 -7.0553 -4.4599 41 1 1.6674 -6.9737 -2.6427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184785175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:00 Heat of formation + Delta-G solvation = -22.352606 kcal Electronic energy + Delta-G solvation = -22668.963872 eV Core-core repulsion = 19512.606160 eV Total energy + Delta-G solvation = -3156.357712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.60138 -40.27685 -37.90249 -36.48601 -35.52898 -33.36885 -31.54293 -30.67013 -30.29859 -27.99987 -25.77988 -24.99480 -24.05692 -22.76868 -22.35103 -21.14472 -20.03743 -18.52668 -17.69772 -17.26995 -17.05550 -16.64168 -16.54652 -16.03198 -15.93708 -15.48886 -15.32529 -14.65445 -14.47084 -14.12889 -14.06036 -13.93288 -13.42316 -13.38642 -13.15858 -12.97708 -12.79856 -12.59706 -12.47509 -12.29301 -12.14750 -12.05642 -11.80415 -11.49520 -11.41560 -11.25821 -10.72590 -10.57798 -10.37988 -9.82391 -8.87831 -8.21204 -6.32317 -0.42188 0.31136 1.33483 1.36945 1.38168 1.50093 2.38366 2.60122 2.74894 2.97642 3.11720 3.42283 3.65832 3.83499 3.94673 4.04950 4.09538 4.22586 4.23507 4.28913 4.35084 4.44643 4.51484 4.54431 4.63519 4.71935 4.77480 4.87250 4.94586 4.97999 5.00380 5.15152 5.18176 5.23308 5.26532 5.35909 5.42380 5.48851 5.62932 5.72541 5.83034 5.86993 6.22203 6.26736 6.40490 6.84417 7.37014 8.89817 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.005019 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.097378 B = 5577.625318 C = 6105.229400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.958 3.042 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.122 4.122 11 C 0.060 3.940 12 N -0.487 5.487 13 C 0.056 3.944 14 C -0.098 4.098 15 H 0.097 0.903 16 C -0.090 4.090 17 C -0.159 4.159 18 C 0.406 3.594 19 O -0.496 6.496 20 C -0.167 4.167 21 C -0.083 4.083 22 C -0.120 4.120 23 C -0.081 4.081 24 C 0.071 3.929 25 C -0.102 4.102 26 H 0.263 0.737 27 H -0.013 1.013 28 H -0.002 1.002 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 -15.304 0.513 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.577 4.577 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.161 4.161 11 C -0.065 4.065 12 N -0.202 5.202 13 C -0.070 4.070 14 C -0.117 4.117 15 H 0.115 0.885 16 C -0.128 4.128 17 C -0.196 4.196 18 C 0.288 3.712 19 O -0.375 6.375 20 C -0.169 4.169 21 C -0.101 4.101 22 C -0.139 4.139 23 C -0.101 4.101 24 C -0.026 4.026 25 C -0.105 4.105 26 H 0.072 0.928 27 H 0.005 0.995 28 H 0.016 0.984 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.155 0.845 40 H 0.173 0.827 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.866 -15.720 0.267 18.562 hybrid contribution 0.227 1.903 -0.460 1.971 sum 10.094 -13.817 -0.192 17.112 Atomic orbital electron populations 1.70087 1.07657 1.27631 1.51769 1.25904 0.95702 1.03089 0.94854 0.85506 0.79124 0.79272 0.77832 1.18759 1.20661 1.20103 1.21670 0.93295 0.92430 1.50274 0.92596 1.18932 0.94292 0.92856 0.94875 1.22194 0.98620 0.94814 1.00451 1.22356 0.94241 0.86862 1.03051 1.60920 1.16943 1.40907 1.01474 1.23557 0.88406 1.01848 0.93153 1.21752 0.97607 1.01190 0.91156 0.88549 1.21508 0.90140 1.01477 0.99669 1.22101 1.02475 1.03949 0.91121 1.22799 0.86581 0.70793 0.91045 1.90489 1.48502 1.42528 1.55954 1.19908 0.94665 1.06801 0.95502 1.21265 0.96559 0.96606 0.95719 1.21385 0.91821 1.00517 1.00144 1.21478 1.00739 0.97571 0.90287 1.19473 0.92681 0.98239 0.92208 1.21710 0.94710 0.97194 0.96905 0.92788 0.99492 0.98359 0.91399 0.94446 0.91476 0.89544 0.87264 0.88460 0.90292 0.87499 0.86717 0.87423 0.84541 0.82706 0.83156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.03 1.44 4.97 29.85 0.15 1.58 16 10 C -0.12 -4.71 3.41 30.60 0.10 -4.61 16 11 C 0.06 1.93 5.30 86.30 0.46 2.39 16 12 N -0.49 -13.34 5.34 -684.99 -3.66 -17.00 16 13 C 0.06 1.25 6.16 86.05 0.53 1.78 16 14 C -0.10 -2.30 2.46 -11.14 -0.03 -2.33 16 15 H 0.10 2.65 5.95 -2.39 -0.01 2.64 16 16 C -0.09 -1.53 5.36 30.71 0.16 -1.36 16 17 C -0.16 -3.09 5.89 30.12 0.18 -2.91 16 18 C 0.41 10.96 7.11 28.01 0.20 11.16 16 19 O -0.50 -16.01 17.70 -2.95 -0.05 -16.06 16 20 C -0.17 -4.65 5.88 -20.56 -0.12 -4.77 16 21 C -0.08 -2.12 9.86 22.54 0.22 -1.90 16 22 C -0.12 -2.72 9.89 22.53 0.22 -2.49 16 23 C -0.08 -2.01 10.29 22.85 0.24 -1.77 16 24 C 0.07 1.99 5.04 38.49 0.19 2.19 16 25 C -0.10 -2.79 4.85 -19.43 -0.09 -2.89 16 26 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 27 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 28 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.07 2.44 5.26 -2.39 -0.01 2.43 16 30 H 0.04 1.53 6.69 -2.38 -0.02 1.51 16 31 H 0.07 2.22 8.06 -2.39 -0.02 2.20 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.11 1.97 7.94 -2.39 -0.02 1.95 16 34 H 0.10 2.12 6.94 -2.39 -0.02 2.10 16 35 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -68.37 326.25 2.73 -65.64 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.02 Total: 12.38 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 3.11 Total: -35.19 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -3.38 Total: -72.70 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.05 Total: -16.06 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -68.37 2.73 -65.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184785175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.286 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds