Wall clock time and date at job start Tue Mar 31 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00179 * 2 1 4 4 O 1.20826 * 119.99613 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00236 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.33114 * 304.30084 * 5 3 2 7 7 C 1.54484 * 110.37285 * 66.55039 * 5 3 2 8 8 C 1.54795 * 103.92528 * 142.89055 * 7 5 3 9 9 C 1.54482 * 104.09044 * 359.97438 * 8 7 5 10 10 H 1.08992 * 110.37634 * 94.86197 * 9 8 7 11 11 C 1.50703 * 110.37349 * 217.20126 * 9 8 7 12 12 O 1.21278 * 120.00350 * 111.83440 * 11 9 8 13 13 N 1.34781 * 119.99704 * 291.83213 * 11 9 8 14 14 C 1.46494 * 119.99911 * 0.02562 * 13 11 9 15 15 C 1.46503 * 119.99882 * 179.97438 * 13 11 9 16 16 H 1.08995 * 109.46780 * 0.02562 * 15 13 11 17 17 C 1.52995 * 109.46714 * 120.00282 * 15 13 11 18 18 C 1.50699 * 109.47048 * 240.00152 * 15 13 11 19 19 H 1.07994 * 120.00237 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99532 * 180.02562 * 18 15 13 21 21 N 1.31512 * 120.00426 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99883 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47022 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47522 * 119.99848 * 22 20 18 25 25 H 1.48498 * 109.47188 * 240.00076 * 22 20 18 26 26 O 1.44418 * 110.37291 * 182.05054 * 5 3 2 27 27 H 1.08993 * 109.47232 * 59.99666 * 1 2 3 28 28 H 1.09005 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46933 * 299.99518 * 1 2 3 30 30 H 1.08994 * 110.51204 * 261.57141 * 7 5 3 31 31 H 1.09001 * 110.50893 * 24.27664 * 7 5 3 32 32 H 1.09002 * 110.49125 * 241.34198 * 8 7 5 33 33 H 1.08997 * 110.62330 * 118.70261 * 8 7 5 34 34 H 1.09000 * 109.47700 * 90.00108 * 14 13 11 35 35 H 1.08998 * 109.47286 * 209.99825 * 14 13 11 36 36 H 1.09002 * 109.47523 * 329.99416 * 14 13 11 37 37 H 1.09001 * 109.47184 * 180.02562 * 17 15 13 38 38 H 1.09004 * 109.47557 * 299.99944 * 17 15 13 39 39 H 1.09000 * 109.47573 * 60.00107 * 17 15 13 40 40 H 0.96996 * 120.00580 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9750 0.7193 0.8435 7 6 4.1330 0.7278 -1.3295 8 6 5.3392 1.6509 -1.6283 9 6 5.3550 2.6438 -0.4449 10 1 6.0379 2.2984 0.3312 11 6 5.7499 4.0187 -0.9190 12 8 4.9381 4.9196 -0.9104 13 7 7.0055 4.2472 -1.3524 14 6 7.9861 3.1589 -1.3633 15 6 7.3894 5.5837 -1.8138 16 1 6.5347 6.2552 -1.7330 17 6 8.5359 6.1117 -0.9494 18 6 7.8366 5.5097 -3.2510 19 1 7.8347 4.5621 -3.7691 20 6 8.2482 6.6519 -3.9045 21 7 8.2500 7.8059 -3.2738 22 14 8.8020 6.5604 -5.6861 23 1 8.7063 5.1573 -6.1628 24 1 7.9315 7.4275 -6.5202 25 1 10.2089 7.0237 -5.7916 26 8 3.9976 2.6523 0.0480 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.4608 -0.3047 -1.2087 31 1 3.3883 0.8027 -2.1219 32 1 5.1903 2.1808 -2.5691 33 1 6.2648 1.0760 -1.6571 34 1 7.9443 2.6416 -2.3218 35 1 8.9852 3.5684 -1.2148 36 1 7.7585 2.4566 -0.5613 37 1 8.8213 7.1063 -1.2923 38 1 8.2125 6.1652 0.0902 39 1 9.3907 5.4402 -1.0298 40 1 8.5392 8.6095 -3.7336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191075109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:47 Heat of formation + Delta-G solvation = -152.179732 kcal Electronic energy + Delta-G solvation = -23347.774091 eV Core-core repulsion = 19742.644638 eV Total energy + Delta-G solvation = -3605.129453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91138 -39.78441 -38.12308 -36.50388 -35.31197 -33.05081 -32.22129 -30.82789 -29.15176 -27.72006 -26.22790 -25.24983 -24.67568 -22.20153 -21.05637 -20.96373 -18.75355 -17.75899 -17.22321 -16.93013 -16.58781 -16.34257 -15.76307 -15.46524 -15.08512 -14.51670 -14.18019 -13.92399 -13.84477 -13.37636 -13.14864 -12.66901 -12.53326 -12.41543 -12.06803 -11.85472 -11.70253 -11.57317 -11.39638 -11.08407 -11.04046 -11.00400 -10.81814 -10.71946 -10.51810 -10.24782 -10.17653 -10.01658 -9.17661 -8.85859 -8.43050 -7.62144 -6.07522 -4.15765 2.02038 2.18082 3.25353 3.26739 3.33710 3.35834 3.50821 4.12567 4.29792 4.38251 4.54700 4.62154 4.81513 4.86921 4.92317 4.94312 4.99894 5.22726 5.26295 5.28275 5.35644 5.56595 5.64573 5.70668 5.96060 6.02244 6.11260 6.24220 6.47100 6.76381 6.82139 7.04735 7.41788 7.50980 7.60159 7.70558 8.01244 8.18145 8.48185 8.82793 9.02488 9.50770 10.97906 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028297 B = 0.003752 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.258264 B = 7460.096179 C = 7582.766051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.476 6.476 5 C 0.081 3.919 6 H 0.110 0.890 7 C -0.137 4.137 8 C -0.142 4.142 9 C 0.057 3.943 10 H 0.096 0.904 11 C 0.509 3.491 12 O -0.526 6.526 13 N -0.590 5.590 14 C 0.083 3.917 15 C 0.258 3.742 16 H 0.064 0.936 17 C -0.147 4.147 18 C -0.525 4.525 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.899 3.101 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 O -0.316 6.316 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.012 0.988 39 H 0.031 0.969 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 -19.361 6.114 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.303 3.697 4 O -0.360 6.360 5 C 0.022 3.978 6 H 0.128 0.872 7 C -0.175 4.175 8 C -0.180 4.180 9 C -0.005 4.005 10 H 0.113 0.887 11 C 0.293 3.707 12 O -0.403 6.403 13 N -0.323 5.323 14 C -0.061 4.061 15 C 0.159 3.841 16 H 0.082 0.918 17 C -0.206 4.206 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 O -0.234 6.234 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.031 0.969 39 H 0.050 0.950 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.555 -18.149 6.153 20.254 hybrid contribution 0.302 -0.155 -1.017 1.073 sum -6.254 -18.304 5.136 20.013 Atomic orbital electron populations 1.23290 0.75937 1.03693 1.02841 1.86453 1.23624 1.32918 1.84612 1.23249 0.91219 0.81723 0.73494 1.90746 1.66450 1.36185 1.42664 1.22397 0.87931 0.86785 1.00697 0.87229 1.22932 0.98267 1.00525 0.95763 1.23011 0.98878 0.96535 0.99618 1.23051 0.84981 0.96051 0.96368 0.88696 1.19803 0.83064 0.88518 0.79300 1.90712 1.49999 1.45066 1.54480 1.48172 1.08881 1.13121 1.62108 1.21653 0.94440 0.89916 1.00046 1.18975 0.95151 0.77336 0.92665 0.91834 1.22101 0.98504 1.03944 0.96031 1.21339 1.44388 0.94627 0.96017 0.92176 1.24902 0.95436 0.95200 0.98304 1.69886 1.47285 0.98760 1.36594 0.86433 0.78189 0.78113 0.84595 1.19827 1.20915 1.20951 1.89408 1.27390 1.21450 1.85140 0.91739 0.87903 0.91772 0.88591 0.89949 0.89242 0.88805 0.93033 0.90609 0.93064 0.88719 0.96878 0.95033 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.83 10.57 -39.25 -0.41 -4.24 16 3 C 0.46 6.38 7.20 36.01 0.26 6.64 16 4 O -0.48 -8.64 16.30 -25.29 -0.41 -9.05 16 5 C 0.08 1.00 3.81 -27.10 -0.10 0.90 16 6 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 7 C -0.14 -1.38 6.64 -25.01 -0.17 -1.54 16 8 C -0.14 -1.72 5.71 -25.01 -0.14 -1.86 16 9 C 0.06 0.88 2.78 -27.10 -0.08 0.80 16 10 H 0.10 1.16 7.12 -51.93 -0.37 0.79 16 11 C 0.51 10.92 6.97 -10.98 -0.08 10.84 16 12 O -0.53 -14.15 15.88 -13.62 -0.22 -14.37 16 13 N -0.59 -12.40 2.75 -175.27 -0.48 -12.88 16 14 C 0.08 1.29 8.42 59.84 0.50 1.80 16 15 C 0.26 6.61 2.64 -69.08 -0.18 6.43 16 16 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 17 C -0.15 -3.50 8.95 37.15 0.33 -3.17 16 18 C -0.52 -14.08 8.37 -34.44 -0.29 -14.37 16 19 H 0.06 1.57 7.64 -52.49 -0.40 1.17 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 22 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 O -0.32 -5.59 10.17 -64.22 -0.65 -6.24 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.87 7.87 -51.93 -0.41 0.47 16 32 H 0.09 1.29 7.86 -51.93 -0.41 0.88 16 33 H 0.09 0.83 7.55 -51.93 -0.39 0.44 16 34 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 35 H 0.08 1.20 6.43 -51.93 -0.33 0.87 16 36 H 0.05 0.59 6.08 -51.93 -0.32 0.28 16 37 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 330.64 15.07 4.98 4.98 Total: -1.00 -35.98 330.64 -6.30 -42.27 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.74 Total: -1.32 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 1.03 Total: 9.47 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.14 Total: -37.43 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.70 Total: -33.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.98 -6.30 -42.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191075109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.907 kcal (2) G-P(sol) polarization free energy of solvation -35.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds