Wall clock time and date at job start Tue Mar 31 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00179 * 2 1 4 4 O 1.20826 * 119.99613 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00236 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.33114 * 304.30084 * 5 3 2 7 7 C 1.54484 * 110.37285 * 66.55039 * 5 3 2 8 8 C 1.54795 * 103.92528 * 142.89055 * 7 5 3 9 9 C 1.54482 * 104.09044 * 359.97438 * 8 7 5 10 10 H 1.08992 * 110.37634 * 94.86197 * 9 8 7 11 11 C 1.50703 * 110.37349 * 217.20126 * 9 8 7 12 12 O 1.21278 * 120.00350 * 111.83440 * 11 9 8 13 13 N 1.34781 * 119.99704 * 291.83213 * 11 9 8 14 14 C 1.46494 * 119.99911 * 0.02562 * 13 11 9 15 15 C 1.46503 * 119.99882 * 179.97438 * 13 11 9 16 16 H 1.08995 * 109.46780 * 0.02562 * 15 13 11 17 17 C 1.52995 * 109.46714 * 120.00282 * 15 13 11 18 18 C 1.50699 * 109.47048 * 240.00152 * 15 13 11 19 19 H 1.07994 * 120.00237 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99532 * 180.02562 * 18 15 13 21 21 N 1.31512 * 120.00426 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99883 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47022 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47522 * 119.99848 * 22 20 18 25 25 H 1.48498 * 109.47188 * 240.00076 * 22 20 18 26 26 O 1.44418 * 110.37291 * 182.05054 * 5 3 2 27 27 H 1.08993 * 109.47232 * 59.99666 * 1 2 3 28 28 H 1.09005 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46933 * 299.99518 * 1 2 3 30 30 H 1.08994 * 110.51204 * 261.57141 * 7 5 3 31 31 H 1.09001 * 110.50893 * 24.27664 * 7 5 3 32 32 H 1.09002 * 110.49125 * 241.34198 * 8 7 5 33 33 H 1.08997 * 110.62330 * 118.70261 * 8 7 5 34 34 H 1.09000 * 109.47700 * 90.00108 * 14 13 11 35 35 H 1.08998 * 109.47286 * 209.99825 * 14 13 11 36 36 H 1.09002 * 109.47523 * 329.99416 * 14 13 11 37 37 H 1.09001 * 109.47184 * 180.02562 * 17 15 13 38 38 H 1.09004 * 109.47557 * 299.99944 * 17 15 13 39 39 H 1.09000 * 109.47573 * 60.00107 * 17 15 13 40 40 H 0.96996 * 120.00580 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9750 0.7193 0.8435 7 6 4.1330 0.7278 -1.3295 8 6 5.3392 1.6509 -1.6283 9 6 5.3550 2.6438 -0.4449 10 1 6.0379 2.2984 0.3312 11 6 5.7499 4.0187 -0.9190 12 8 4.9381 4.9196 -0.9104 13 7 7.0055 4.2472 -1.3524 14 6 7.9861 3.1589 -1.3633 15 6 7.3894 5.5837 -1.8138 16 1 6.5347 6.2552 -1.7330 17 6 8.5359 6.1117 -0.9494 18 6 7.8366 5.5097 -3.2510 19 1 7.8347 4.5621 -3.7691 20 6 8.2482 6.6519 -3.9045 21 7 8.2500 7.8059 -3.2738 22 14 8.8020 6.5604 -5.6861 23 1 8.7063 5.1573 -6.1628 24 1 7.9315 7.4275 -6.5202 25 1 10.2089 7.0237 -5.7916 26 8 3.9976 2.6523 0.0480 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.4608 -0.3047 -1.2087 31 1 3.3883 0.8027 -2.1219 32 1 5.1903 2.1808 -2.5691 33 1 6.2648 1.0760 -1.6571 34 1 7.9443 2.6416 -2.3218 35 1 8.9852 3.5684 -1.2148 36 1 7.7585 2.4566 -0.5613 37 1 8.8213 7.1063 -1.2923 38 1 8.2125 6.1652 0.0902 39 1 9.3907 5.4402 -1.0298 40 1 8.5392 8.6095 -3.7336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191075109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:46 Heat of formation + Delta-G solvation = -177.560774 kcal Electronic energy + Delta-G solvation = -23348.874695 eV Core-core repulsion = 19742.644638 eV Total energy + Delta-G solvation = -3606.230058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.97686 -41.09252 -39.49982 -37.54847 -37.13145 -34.91227 -33.30963 -32.22720 -30.68107 -28.56673 -27.63314 -27.29455 -25.84734 -23.32962 -22.54696 -21.99968 -20.26382 -18.97325 -18.50670 -18.21901 -17.92387 -17.70883 -17.12082 -16.86549 -16.45953 -16.13874 -15.56704 -15.14029 -14.86503 -14.65640 -14.40228 -14.28728 -13.96230 -13.48849 -13.45779 -13.05878 -12.98409 -12.91206 -12.79297 -12.69841 -12.64512 -12.46497 -12.17374 -12.10788 -11.94235 -11.88473 -11.57580 -11.17306 -11.11440 -10.60605 -10.42573 -9.35295 -8.14573 -6.31611 0.99816 1.26907 1.41020 1.43087 1.54183 1.70238 2.13846 2.43489 3.01357 3.13701 3.31411 3.54889 3.72741 3.83988 3.95396 3.98916 4.26232 4.29081 4.30688 4.48377 4.52613 4.68512 4.71333 4.81045 4.85175 4.89010 4.93572 5.01589 5.05937 5.11236 5.20119 5.43276 5.49802 5.65906 5.67821 6.04199 6.15326 6.62095 6.76746 6.79040 7.30385 7.45951 8.90296 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028297 B = 0.003752 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.258264 B = 7460.096179 C = 7582.766051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.463 3.537 4 O -0.535 6.535 5 C 0.074 3.926 6 H 0.158 0.842 7 C -0.125 4.125 8 C -0.137 4.137 9 C 0.065 3.935 10 H 0.143 0.857 11 C 0.493 3.507 12 O -0.602 6.602 13 N -0.592 5.592 14 C 0.074 3.926 15 C 0.260 3.740 16 H 0.000 1.000 17 C -0.133 4.133 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.011 3.989 21 N -0.920 5.920 22 Si 0.968 3.032 23 H -0.260 1.260 24 H -0.289 1.289 25 H -0.273 1.273 26 O -0.368 6.368 27 H 0.056 0.944 28 H 0.144 0.856 29 H 0.059 0.941 30 H 0.148 0.852 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -23.833 6.020 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.307 3.693 4 O -0.424 6.424 5 C 0.016 3.984 6 H 0.175 0.825 7 C -0.162 4.162 8 C -0.175 4.175 9 C 0.005 3.995 10 H 0.160 0.840 11 C 0.281 3.719 12 O -0.483 6.483 13 N -0.323 5.323 14 C -0.067 4.067 15 C 0.158 3.842 16 H 0.018 0.982 17 C -0.191 4.191 18 C -0.573 4.573 19 H 0.084 0.916 20 C -0.188 4.188 21 N -0.560 5.560 22 Si 0.793 3.207 23 H -0.184 1.184 24 H -0.216 1.216 25 H -0.199 1.199 26 O -0.287 6.287 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.078 0.922 30 H 0.166 0.834 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.159 0.841 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.937 -22.713 6.064 24.021 hybrid contribution -0.284 1.203 -0.952 1.560 sum -5.221 -21.510 5.111 22.717 Atomic orbital electron populations 1.23619 0.74475 1.06172 1.02323 1.86455 1.25013 1.31030 1.83704 1.23794 0.92129 0.81638 0.71779 1.90730 1.67793 1.38208 1.45671 1.22891 0.86848 0.84895 1.03785 0.82535 1.22995 0.96826 1.02563 0.93861 1.23082 1.02040 0.96005 0.96372 1.23139 0.85229 0.92223 0.98931 0.84030 1.21044 0.82244 0.90595 0.78063 1.90668 1.52065 1.48084 1.57512 1.48149 1.10169 1.12820 1.61197 1.22040 0.92776 0.88996 1.02904 1.18554 0.93100 0.79298 0.93240 0.98219 1.21879 0.98620 1.02823 0.95787 1.21612 1.44054 0.94932 0.96749 0.91570 1.25799 0.95566 0.94814 1.02647 1.70044 1.48099 0.99455 1.38357 0.85364 0.77808 0.78514 0.79061 1.18407 1.21584 1.19885 1.89370 1.28582 1.25217 1.85537 0.92559 0.83810 0.92181 0.83378 0.91300 0.92592 0.84095 0.91598 0.90835 0.87919 0.91511 0.96245 0.92611 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.35 -6.60 10.57 -51.41 -0.54 -7.15 16 3 C 0.46 12.34 7.20 71.24 0.51 12.85 16 4 O -0.54 -20.14 16.30 28.21 0.46 -19.68 16 5 C 0.07 1.61 3.81 30.35 0.12 1.73 16 6 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 7 C -0.13 -2.00 6.64 31.71 0.21 -1.79 16 8 C -0.14 -2.81 5.71 31.71 0.18 -2.63 16 9 C 0.06 1.87 2.78 30.35 0.08 1.95 16 10 H 0.14 2.72 7.12 -2.39 -0.02 2.70 16 11 C 0.49 21.55 6.97 87.66 0.61 22.16 16 12 O -0.60 -34.73 15.88 15.32 0.24 -34.48 16 13 N -0.59 -24.79 2.75 -826.82 -2.28 -27.06 16 14 C 0.07 2.05 8.42 127.77 1.08 3.13 16 15 C 0.26 13.80 2.64 44.24 0.12 13.92 16 16 H 0.00 -0.01 6.90 -2.39 -0.02 -0.03 16 17 C -0.13 -6.44 8.95 71.98 0.64 -5.79 16 18 C -0.53 -29.11 8.37 25.60 0.21 -28.90 16 19 H 0.07 3.43 7.64 -2.91 -0.02 3.41 16 20 C 0.01 0.60 5.30 84.66 0.45 1.05 16 21 N -0.92 -54.08 11.32 21.45 0.24 -53.84 16 22 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 O -0.37 -12.80 10.17 -121.26 -1.23 -14.04 16 27 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 28 H 0.14 0.87 8.14 -2.38 -0.02 0.86 16 29 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 30 H 0.15 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.30 7.87 -2.39 -0.02 1.28 16 32 H 0.06 1.54 7.86 -2.39 -0.02 1.52 16 33 H 0.14 1.55 7.55 -2.39 -0.02 1.53 16 34 H 0.07 1.66 8.11 -2.39 -0.02 1.64 16 35 H 0.07 2.08 6.43 -2.39 -0.02 2.07 16 36 H 0.10 1.77 6.08 -2.39 -0.01 1.75 16 37 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 38 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.05 2.37 6.66 -2.39 -0.02 2.36 16 40 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -88.80 330.64 5.37 -83.43 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.04 Total: 8.37 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 5.41 Total: 19.28 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.03 Total: -80.90 kcal Atomic # 8 Polarization: -74.27 SS G_CDS: -1.07 Total: -75.34 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -88.80 5.37 -83.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191075109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.135 kcal (2) G-P(sol) polarization free energy of solvation -88.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds