Wall clock time and date at job start Tue Mar 31 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00179 * 2 1 4 4 O 1.20826 * 119.99613 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00236 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.33114 * 304.30084 * 5 3 2 7 7 C 1.54484 * 110.37285 * 66.55039 * 5 3 2 8 8 C 1.54795 * 103.92528 * 142.89055 * 7 5 3 9 9 C 1.54482 * 104.09044 * 359.97438 * 8 7 5 10 10 H 1.08992 * 110.37634 * 94.86197 * 9 8 7 11 11 C 1.50703 * 110.37349 * 217.20126 * 9 8 7 12 12 O 1.21278 * 120.00350 * 111.83440 * 11 9 8 13 13 N 1.34781 * 119.99704 * 291.83213 * 11 9 8 14 14 C 1.46494 * 119.99911 * 0.02562 * 13 11 9 15 15 C 1.46503 * 119.99882 * 179.97438 * 13 11 9 16 16 H 1.08995 * 109.46780 * 0.02562 * 15 13 11 17 17 C 1.52993 * 109.47237 * 240.00120 * 15 13 11 18 18 C 1.50700 * 109.46810 * 120.00182 * 15 13 11 19 19 H 1.08002 * 120.00319 * 0.02562 * 18 15 13 20 20 C 1.37878 * 120.00062 * 180.02562 * 18 15 13 21 21 N 1.31514 * 119.99676 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99968 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47392 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47254 * 119.99959 * 22 20 18 25 25 H 1.48504 * 109.46831 * 239.99946 * 22 20 18 26 26 O 1.44418 * 110.37291 * 182.05054 * 5 3 2 27 27 H 1.09005 * 109.46982 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46933 * 299.99518 * 1 2 3 29 29 H 1.08993 * 109.47232 * 59.99666 * 1 2 3 30 30 H 1.08994 * 110.51204 * 261.57141 * 7 5 3 31 31 H 1.09001 * 110.50893 * 24.27664 * 7 5 3 32 32 H 1.09002 * 110.49125 * 241.34198 * 8 7 5 33 33 H 1.08997 * 110.62330 * 118.70261 * 8 7 5 34 34 H 1.09000 * 109.47700 * 90.00108 * 14 13 11 35 35 H 1.08998 * 109.47286 * 209.99825 * 14 13 11 36 36 H 1.09002 * 109.47523 * 329.99416 * 14 13 11 37 37 H 1.08996 * 109.47273 * 180.02562 * 17 15 13 38 38 H 1.09006 * 109.47284 * 300.00281 * 17 15 13 39 39 H 1.09002 * 109.47289 * 60.00036 * 17 15 13 40 40 H 0.96996 * 119.99557 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9750 0.7193 0.8435 7 6 4.1330 0.7278 -1.3295 8 6 5.3392 1.6509 -1.6283 9 6 5.3550 2.6438 -0.4449 10 1 6.0379 2.2984 0.3312 11 6 5.7499 4.0187 -0.9190 12 8 4.9381 4.9196 -0.9104 13 7 7.0055 4.2472 -1.3524 14 6 7.9861 3.1589 -1.3633 15 6 7.3894 5.5837 -1.8138 16 1 6.5347 6.2552 -1.7330 17 6 7.8434 5.5086 -3.2729 18 6 8.5187 6.1038 -0.9623 19 1 8.9116 5.4992 -0.1583 20 6 9.0505 7.3516 -1.2098 21 7 8.5724 8.0876 -2.1893 22 14 10.4508 7.9961 -0.1548 23 1 10.8040 6.9830 0.8718 24 1 11.6330 8.2656 -1.0122 25 1 10.0283 9.2523 0.5150 26 8 3.9976 2.6523 0.0480 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 4.4608 -0.3047 -1.2087 31 1 3.3883 0.8027 -2.1219 32 1 5.1903 2.1808 -2.5691 33 1 6.2648 1.0760 -1.6571 34 1 7.9443 2.6416 -2.3218 35 1 8.9852 3.5684 -1.2148 36 1 7.7585 2.4566 -0.5613 37 1 8.1294 6.5028 -3.6160 38 1 8.6983 4.8370 -3.3533 39 1 7.0266 5.1323 -3.8888 40 1 8.9463 8.9656 -2.3631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191075126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:50 Heat of formation + Delta-G solvation = -152.849882 kcal Electronic energy + Delta-G solvation = -23308.219887 eV Core-core repulsion = 19703.061374 eV Total energy + Delta-G solvation = -3605.158513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92459 -39.79355 -38.12598 -36.51614 -35.30714 -33.05675 -32.23672 -30.83149 -29.17248 -27.73458 -26.20004 -25.24139 -24.69029 -22.20988 -21.07273 -21.01417 -18.73707 -17.77336 -17.23179 -16.94563 -16.49826 -16.46437 -15.76813 -15.49952 -15.02412 -14.51335 -14.23880 -13.95030 -13.85892 -13.38053 -13.05451 -12.64025 -12.53518 -12.43445 -12.11269 -11.88235 -11.71455 -11.55777 -11.43449 -11.08841 -11.06153 -11.02187 -10.84021 -10.70176 -10.54185 -10.24289 -10.18091 -10.03210 -9.18428 -8.85883 -8.42838 -7.62429 -6.07734 -4.15888 2.00680 2.17011 3.24116 3.26182 3.34580 3.37191 3.52510 4.09244 4.26853 4.38954 4.52962 4.60402 4.80406 4.85760 4.90455 4.93216 4.98453 5.22580 5.25715 5.26973 5.35694 5.52334 5.65784 5.67103 5.90461 5.96716 6.09966 6.31799 6.46242 6.74690 6.82404 7.05059 7.40446 7.52300 7.58957 7.70541 8.01181 8.18466 8.47862 8.82573 9.02560 9.50587 10.97758 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036007 B = 0.003563 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.450344 B = 7856.714936 C = 8025.651440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.476 6.476 5 C 0.081 3.919 6 H 0.111 0.889 7 C -0.137 4.137 8 C -0.142 4.142 9 C 0.056 3.944 10 H 0.097 0.903 11 C 0.509 3.491 12 O -0.526 6.526 13 N -0.589 5.589 14 C 0.080 3.920 15 C 0.258 3.742 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.526 4.526 19 H 0.061 0.939 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 O -0.316 6.316 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.011 0.989 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 -20.506 1.657 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.303 3.697 4 O -0.360 6.360 5 C 0.021 3.979 6 H 0.128 0.872 7 C -0.175 4.175 8 C -0.180 4.180 9 C -0.005 4.005 10 H 0.114 0.886 11 C 0.293 3.707 12 O -0.403 6.403 13 N -0.322 5.322 14 C -0.064 4.064 15 C 0.159 3.841 16 H 0.081 0.919 17 C -0.204 4.204 18 C -0.565 4.565 19 H 0.079 0.921 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 O -0.233 6.233 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.030 0.970 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.870 -19.310 1.634 20.916 hybrid contribution 0.743 0.239 0.539 0.949 sum -7.126 -19.070 2.173 20.474 Atomic orbital electron populations 1.23291 0.75933 1.03699 1.02841 1.86454 1.23626 1.32914 1.84613 1.23248 0.91214 0.81723 0.73499 1.90747 1.66448 1.36187 1.42657 1.22401 0.87935 0.86840 1.00683 0.87195 1.22930 0.98195 1.00548 0.95803 1.23007 0.98950 0.96583 0.99445 1.23060 0.85037 0.96012 0.96389 0.88559 1.19801 0.83100 0.88470 0.79300 1.90712 1.50282 1.45003 1.54254 1.48171 1.08599 1.13009 1.62455 1.21697 0.95256 0.89831 0.99585 1.18971 0.96797 0.77115 0.91240 0.91854 1.22080 0.97546 1.03399 0.97380 1.21348 1.17569 1.01800 1.15786 0.92109 1.24901 0.97124 0.96464 0.95328 1.69891 1.41817 1.11126 1.29661 0.86425 0.81687 0.78966 0.80214 1.19798 1.20947 1.20897 1.89418 1.27363 1.21373 1.85172 0.87896 0.91757 0.91756 0.88564 0.89974 0.89528 0.88784 0.93640 0.89835 0.92920 0.88784 0.95100 0.97005 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.77 10.57 -39.25 -0.41 -4.18 16 3 C 0.46 6.31 7.20 36.01 0.26 6.57 16 4 O -0.48 -8.57 16.30 -25.29 -0.41 -8.98 16 5 C 0.08 0.99 3.81 -27.10 -0.10 0.89 16 6 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.14 -1.31 6.64 -25.01 -0.17 -1.48 16 8 C -0.14 -1.62 5.71 -25.01 -0.14 -1.76 16 9 C 0.06 0.87 2.78 -27.10 -0.08 0.80 16 10 H 0.10 1.23 7.12 -51.93 -0.37 0.86 16 11 C 0.51 10.94 6.97 -10.98 -0.08 10.86 16 12 O -0.53 -14.17 15.88 -13.62 -0.22 -14.38 16 13 N -0.59 -12.40 2.75 -175.27 -0.48 -12.88 16 14 C 0.08 1.25 8.17 59.84 0.49 1.74 16 15 C 0.26 6.62 2.64 -69.08 -0.18 6.43 16 16 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 17 C -0.15 -3.45 8.97 37.15 0.33 -3.12 16 18 C -0.53 -14.16 7.99 -34.44 -0.28 -14.43 16 19 H 0.06 1.60 7.33 -52.49 -0.38 1.21 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 22 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 O -0.32 -5.59 10.17 -64.22 -0.65 -6.24 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 32 H 0.09 1.13 7.86 -51.93 -0.41 0.73 16 33 H 0.09 0.78 7.55 -51.93 -0.39 0.38 16 34 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 35 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 36 H 0.05 0.63 6.08 -51.93 -0.32 0.32 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 38 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -36.04 331.32 -6.35 -42.39 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.81 Total: -1.63 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 1.03 Total: 9.50 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.15 Total: -37.44 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.70 Total: -33.79 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.04 -6.35 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191075126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.455 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds