Wall clock time and date at job start Tue Mar 31 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00179 * 2 1 4 4 O 1.20826 * 119.99613 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00236 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.33114 * 304.30084 * 5 3 2 7 7 C 1.54484 * 110.37285 * 66.55039 * 5 3 2 8 8 C 1.54795 * 103.92528 * 142.89055 * 7 5 3 9 9 C 1.54482 * 104.09044 * 359.97438 * 8 7 5 10 10 H 1.08992 * 110.37634 * 94.86197 * 9 8 7 11 11 C 1.50703 * 110.37349 * 217.20126 * 9 8 7 12 12 O 1.21278 * 120.00350 * 111.83440 * 11 9 8 13 13 N 1.34781 * 119.99704 * 291.83213 * 11 9 8 14 14 C 1.46494 * 119.99911 * 0.02562 * 13 11 9 15 15 C 1.46503 * 119.99882 * 179.97438 * 13 11 9 16 16 H 1.08995 * 109.46780 * 0.02562 * 15 13 11 17 17 C 1.52993 * 109.47237 * 240.00120 * 15 13 11 18 18 C 1.50700 * 109.46810 * 120.00182 * 15 13 11 19 19 H 1.08002 * 120.00319 * 0.02562 * 18 15 13 20 20 C 1.37878 * 120.00062 * 180.02562 * 18 15 13 21 21 N 1.31514 * 119.99676 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99968 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47392 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47254 * 119.99959 * 22 20 18 25 25 H 1.48504 * 109.46831 * 239.99946 * 22 20 18 26 26 O 1.44418 * 110.37291 * 182.05054 * 5 3 2 27 27 H 1.09005 * 109.46982 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46933 * 299.99518 * 1 2 3 29 29 H 1.08993 * 109.47232 * 59.99666 * 1 2 3 30 30 H 1.08994 * 110.51204 * 261.57141 * 7 5 3 31 31 H 1.09001 * 110.50893 * 24.27664 * 7 5 3 32 32 H 1.09002 * 110.49125 * 241.34198 * 8 7 5 33 33 H 1.08997 * 110.62330 * 118.70261 * 8 7 5 34 34 H 1.09000 * 109.47700 * 90.00108 * 14 13 11 35 35 H 1.08998 * 109.47286 * 209.99825 * 14 13 11 36 36 H 1.09002 * 109.47523 * 329.99416 * 14 13 11 37 37 H 1.08996 * 109.47273 * 180.02562 * 17 15 13 38 38 H 1.09006 * 109.47284 * 300.00281 * 17 15 13 39 39 H 1.09002 * 109.47289 * 60.00036 * 17 15 13 40 40 H 0.96996 * 119.99557 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9750 0.7193 0.8435 7 6 4.1330 0.7278 -1.3295 8 6 5.3392 1.6509 -1.6283 9 6 5.3550 2.6438 -0.4449 10 1 6.0379 2.2984 0.3312 11 6 5.7499 4.0187 -0.9190 12 8 4.9381 4.9196 -0.9104 13 7 7.0055 4.2472 -1.3524 14 6 7.9861 3.1589 -1.3633 15 6 7.3894 5.5837 -1.8138 16 1 6.5347 6.2552 -1.7330 17 6 7.8434 5.5086 -3.2729 18 6 8.5187 6.1038 -0.9623 19 1 8.9116 5.4992 -0.1583 20 6 9.0505 7.3516 -1.2098 21 7 8.5724 8.0876 -2.1893 22 14 10.4508 7.9961 -0.1548 23 1 10.8040 6.9830 0.8718 24 1 11.6330 8.2656 -1.0122 25 1 10.0283 9.2523 0.5150 26 8 3.9976 2.6523 0.0480 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 4.4608 -0.3047 -1.2087 31 1 3.3883 0.8027 -2.1219 32 1 5.1903 2.1808 -2.5691 33 1 6.2648 1.0760 -1.6571 34 1 7.9443 2.6416 -2.3218 35 1 8.9852 3.5684 -1.2148 36 1 7.7585 2.4566 -0.5613 37 1 8.1294 6.5028 -3.6160 38 1 8.6983 4.8370 -3.3533 39 1 7.0266 5.1323 -3.8888 40 1 8.9463 8.9656 -2.3631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191075126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:49 Heat of formation + Delta-G solvation = -178.273168 kcal Electronic energy + Delta-G solvation = -23309.322323 eV Core-core repulsion = 19703.061374 eV Total energy + Delta-G solvation = -3606.260949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.97782 -41.09254 -39.49790 -37.54843 -37.12657 -34.91326 -33.30169 -32.22353 -30.69649 -28.56774 -27.59233 -27.30720 -25.84015 -23.29560 -22.61350 -21.99879 -20.23678 -18.96679 -18.45593 -18.31964 -17.90442 -17.71805 -17.14049 -16.81684 -16.44309 -16.14858 -15.60462 -15.12182 -14.84937 -14.53499 -14.44482 -14.27959 -13.91755 -13.53912 -13.45473 -13.08717 -12.94249 -12.93082 -12.80337 -12.67656 -12.62845 -12.51069 -12.18964 -12.09652 -11.93719 -11.88459 -11.57611 -11.19461 -11.10427 -10.60997 -10.42366 -9.35116 -8.14989 -6.31885 0.99696 1.26605 1.41139 1.43542 1.54585 1.70403 2.14782 2.43244 3.01004 3.13474 3.31563 3.54575 3.72870 3.83737 3.96145 3.99329 4.27361 4.29182 4.31409 4.49137 4.54112 4.68693 4.75572 4.80065 4.84001 4.89850 4.94084 5.00560 5.05652 5.12085 5.20028 5.43976 5.50063 5.65083 5.66571 6.04638 6.15654 6.62099 6.76711 6.78747 7.30243 7.45806 8.89987 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036007 B = 0.003563 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.450344 B = 7856.714936 C = 8025.651440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.464 3.536 4 O -0.535 6.535 5 C 0.072 3.928 6 H 0.154 0.846 7 C -0.125 4.125 8 C -0.135 4.135 9 C 0.063 3.937 10 H 0.137 0.863 11 C 0.493 3.507 12 O -0.602 6.602 13 N -0.592 5.592 14 C 0.071 3.929 15 C 0.260 3.740 16 H 0.000 1.000 17 C -0.130 4.130 18 C -0.537 4.537 19 H 0.066 0.934 20 C 0.012 3.988 21 N -0.920 5.920 22 Si 0.968 3.032 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.289 1.289 26 O -0.369 6.369 27 H 0.144 0.856 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.148 0.852 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.142 0.858 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.018 0.982 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -24.701 2.434 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.307 3.693 4 O -0.424 6.424 5 C 0.014 3.986 6 H 0.172 0.828 7 C -0.162 4.162 8 C -0.173 4.173 9 C 0.003 3.997 10 H 0.154 0.846 11 C 0.281 3.719 12 O -0.483 6.483 13 N -0.323 5.323 14 C -0.070 4.070 15 C 0.158 3.842 16 H 0.018 0.982 17 C -0.188 4.188 18 C -0.575 4.575 19 H 0.085 0.915 20 C -0.188 4.188 21 N -0.559 5.559 22 Si 0.793 3.207 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.216 1.216 26 O -0.288 6.288 27 H 0.162 0.838 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.166 0.834 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.160 0.840 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.976 -23.600 2.405 24.464 hybrid contribution 0.058 1.498 0.293 1.527 sum -5.917 -22.103 2.698 23.039 Atomic orbital electron populations 1.23621 0.74462 1.06179 1.02328 1.86455 1.25020 1.31012 1.83703 1.23778 0.92094 0.81640 0.71781 1.90730 1.67786 1.38211 1.45676 1.22894 0.86894 0.84889 1.03904 0.82847 1.22998 0.96898 1.02553 0.93747 1.23089 1.02035 0.95881 0.96283 1.23132 0.85125 0.92363 0.99046 0.84624 1.21034 0.82305 0.90558 0.78028 1.90668 1.52354 1.48037 1.57280 1.48148 1.09875 1.12656 1.61626 1.22076 0.93035 0.88805 1.03101 1.18549 0.94021 0.79047 0.92548 0.98237 1.21848 0.98474 1.02336 0.96187 1.21628 1.17623 1.02261 1.16024 0.91549 1.25797 0.99713 0.96752 0.96518 1.70048 1.43199 1.11430 1.31231 0.85358 0.78627 0.78018 0.78703 1.18463 1.19840 1.21558 1.89378 1.28550 1.25221 1.85629 0.83801 0.92275 0.92456 0.83443 0.91007 0.91995 0.84033 0.90586 0.91012 0.88430 0.91589 0.92749 0.96307 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.35 -6.50 10.57 -51.41 -0.54 -7.04 16 3 C 0.46 12.24 7.20 71.24 0.51 12.76 16 4 O -0.54 -20.01 16.30 28.21 0.46 -19.55 16 5 C 0.07 1.57 3.81 30.35 0.12 1.69 16 6 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 7 C -0.12 -1.86 6.64 31.71 0.21 -1.65 16 8 C -0.14 -2.55 5.71 31.71 0.18 -2.37 16 9 C 0.06 1.84 2.78 30.35 0.08 1.92 16 10 H 0.14 2.81 7.12 -2.39 -0.02 2.80 16 11 C 0.49 21.59 6.97 87.66 0.61 22.20 16 12 O -0.60 -34.76 15.88 15.32 0.24 -34.52 16 13 N -0.59 -24.79 2.75 -826.82 -2.28 -27.06 16 14 C 0.07 1.97 8.17 127.77 1.04 3.01 16 15 C 0.26 13.82 2.64 44.24 0.12 13.94 16 16 H 0.00 -0.02 6.90 -2.39 -0.02 -0.04 16 17 C -0.13 -6.29 8.97 71.98 0.65 -5.64 16 18 C -0.54 -29.30 7.99 25.60 0.20 -29.10 16 19 H 0.07 3.46 7.33 -2.91 -0.02 3.44 16 20 C 0.01 0.64 5.30 84.65 0.45 1.08 16 21 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 22 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 26 O -0.37 -12.92 10.17 -121.26 -1.23 -14.15 16 27 H 0.14 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 29 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.24 7.87 -2.39 -0.02 1.22 16 32 H 0.06 1.50 7.86 -2.39 -0.02 1.48 16 33 H 0.14 1.34 7.55 -2.39 -0.02 1.32 16 34 H 0.08 1.66 8.11 -2.39 -0.02 1.64 16 35 H 0.07 2.19 7.02 -2.39 -0.02 2.17 16 36 H 0.10 1.81 6.08 -2.39 -0.01 1.80 16 37 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 38 H 0.05 2.31 7.67 -2.38 -0.02 2.29 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -88.84 331.32 5.33 -83.51 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.04 Total: 7.95 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 5.37 Total: 19.42 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.03 Total: -80.89 kcal Atomic # 8 Polarization: -74.19 SS G_CDS: -1.07 Total: -75.27 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -88.84 5.33 -83.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191075126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.762 kcal (2) G-P(sol) polarization free energy of solvation -88.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds