Wall clock time and date at job start Tue Mar 31 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47197 * 64.99872 * 4 3 2 6 6 C 1.46768 * 124.34675 * 90.00103 * 5 4 3 7 7 C 1.54482 * 105.47262 * 197.01726 * 6 5 4 8 8 H 1.08997 * 110.96874 * 216.42582 * 7 6 5 9 9 C 1.50701 * 110.96821 * 92.70143 * 7 6 5 10 10 O 1.20827 * 120.00313 * 0.02562 * 9 7 6 11 11 O 1.34226 * 120.00345 * 179.97438 * 9 7 6 12 12 C 1.45197 * 117.00558 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47140 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.46958 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00308 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00147 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00014 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00278 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47018 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46909 * 120.00276 * 18 16 14 21 21 H 1.48498 * 109.46943 * 240.00061 * 18 16 14 22 22 C 1.54630 * 101.76567 * 334.58655 * 7 6 5 23 23 C 1.34417 * 124.35273 * 269.70365 * 5 4 3 24 24 O 1.21281 * 124.94224 * 359.57220 * 23 5 4 25 25 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 29 29 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 30 30 H 1.08995 * 109.47203 * 184.99963 * 4 3 2 31 31 H 1.09003 * 109.47000 * 305.00424 * 4 3 2 32 32 H 1.09001 * 110.24370 * 316.01486 * 6 5 4 33 33 H 1.08996 * 110.24690 * 78.01687 * 6 5 4 34 34 H 1.09002 * 109.46934 * 299.99883 * 12 11 9 35 35 H 1.08993 * 109.47306 * 59.99706 * 12 11 9 36 36 H 1.08996 * 109.47085 * 300.00017 * 13 12 11 37 37 H 1.08999 * 109.46989 * 60.00232 * 13 12 11 38 38 H 0.96997 * 120.00214 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.48647 * 143.47634 * 22 7 6 40 40 H 1.09003 * 110.48219 * 265.98841 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.3131 1.3077 -2.4705 7 6 4.2896 0.2642 -3.6094 8 1 5.0682 0.4706 -4.3437 9 6 2.9337 0.2120 -4.2651 10 8 2.0466 0.9345 -3.8768 11 8 2.7119 -0.6363 -5.2814 12 6 1.3825 -0.6322 -5.8654 13 6 1.3209 -1.6566 -7.0002 14 6 -0.0590 -1.6527 -7.6059 15 1 -0.8164 -0.9866 -7.2198 16 6 -0.3547 -2.4995 -8.6530 17 7 0.5674 -3.3111 -9.1229 18 14 -2.0654 -2.4953 -9.4034 19 1 -2.9121 -1.4988 -8.6995 20 1 -1.9739 -2.1385 -10.8420 21 1 -2.6697 -3.8447 -9.2655 22 6 4.5841 -1.0460 -2.8426 23 6 4.1310 -0.7596 -1.4279 24 8 3.9331 -1.6019 -0.5780 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 3.9785 2.1764 0.0902 31 1 3.8508 0.5684 0.8427 32 1 3.5710 2.0845 -2.6553 33 1 5.3065 1.7474 -2.3823 34 1 0.6494 -0.8919 -5.1017 35 1 1.1615 0.3600 -6.2586 36 1 2.0540 -1.3973 -7.7639 37 1 1.5416 -2.6487 -6.6065 38 1 0.3593 -3.9071 -9.8593 39 1 4.0159 -1.8730 -3.2682 40 1 5.6512 -1.2675 -2.8620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193020948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:48 Heat of formation + Delta-G solvation = -170.294296 kcal Electronic energy + Delta-G solvation = -23067.993182 eV Core-core repulsion = 19462.078223 eV Total energy + Delta-G solvation = -3605.914960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00206 -39.49486 -37.77813 -36.62837 -35.83017 -33.61639 -33.29229 -30.39084 -29.39880 -27.84848 -26.35353 -25.40931 -23.87707 -22.84570 -21.04186 -20.27367 -19.47808 -17.86876 -17.09832 -16.71067 -16.49271 -16.03122 -15.87885 -15.78948 -15.31189 -15.03296 -14.67051 -14.46416 -13.82278 -13.47499 -13.34645 -12.98307 -12.83517 -12.50212 -12.38901 -12.16574 -11.86386 -11.86348 -11.68805 -11.25926 -11.21417 -11.05244 -10.79599 -10.70242 -10.24047 -9.81326 -9.69052 -9.66475 -9.63788 -9.30660 -8.81971 -8.46555 -6.12283 -4.16729 2.42392 2.59174 2.86221 3.02423 3.26278 3.33908 3.38577 3.73693 4.09602 4.23230 4.36895 4.61254 4.82115 4.93477 4.97593 5.10248 5.17530 5.21034 5.24512 5.25902 5.32707 5.38247 5.42772 5.57705 5.67686 5.71706 5.73310 6.03746 6.05595 6.38900 6.59812 6.92082 7.03109 7.14690 7.53022 7.59708 7.83920 8.11036 8.18616 8.22236 8.88875 9.47902 10.99236 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020940 B = 0.003713 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.803477 B = 7539.448831 C = 8150.998046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.039 3.961 4 C 0.132 3.868 5 N -0.617 5.617 6 C 0.114 3.886 7 C -0.099 4.099 8 H 0.134 0.866 9 C 0.463 3.537 10 O -0.510 6.510 11 O -0.353 6.353 12 C 0.076 3.924 13 C 0.024 3.976 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.145 4.145 23 C 0.522 3.478 24 O -0.515 6.515 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.115 0.885 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.216 11.555 16.017 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.293 6.293 3 C -0.039 4.039 4 C 0.010 3.990 5 N -0.352 5.352 6 C -0.009 4.009 7 C -0.119 4.119 8 H 0.152 0.848 9 C 0.305 3.695 10 O -0.399 6.399 11 O -0.269 6.269 12 C 0.004 3.996 13 C -0.013 4.013 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.186 4.186 23 C 0.309 3.691 24 O -0.389 6.389 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.923 11.019 16.491 21.748 hybrid contribution -1.364 0.369 -0.621 1.544 sum 7.559 11.388 15.870 20.945 Atomic orbital electron populations 1.22720 0.81202 1.02820 0.99606 1.88029 1.19440 1.26599 1.95281 1.22999 0.94305 0.86047 1.00559 1.21377 0.92462 0.98939 0.86189 1.48091 1.67349 1.07271 1.12465 1.22042 1.02053 0.94588 0.82190 1.21938 0.94807 0.97406 0.97711 0.84771 1.23046 0.89953 0.77876 0.78646 1.90618 1.45702 1.41191 1.62368 1.86507 1.38739 1.56754 1.44859 1.23666 0.77551 1.01949 0.96429 1.19178 0.97946 0.93260 0.90900 1.21001 0.96278 1.22250 1.16942 0.92262 1.24977 0.97489 0.95094 0.96544 1.69977 1.33287 1.23258 1.26223 0.86425 0.83922 0.78014 0.79010 1.19622 1.20811 1.20792 1.22365 1.05166 0.97993 0.93029 1.20717 0.76407 0.82173 0.89801 1.90731 1.50511 1.49053 1.48642 0.94505 0.93952 0.89710 0.92520 0.92725 0.88851 0.89177 0.88702 0.89691 0.92367 0.92278 0.95300 0.95291 0.92733 0.86683 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -5.62 10.32 -35.23 -0.36 -5.98 16 3 C 0.04 0.43 6.28 37.16 0.23 0.67 16 4 C 0.13 1.29 6.33 -4.04 -0.03 1.26 16 5 N -0.62 -7.11 2.90 -172.41 -0.50 -7.61 16 6 C 0.11 1.04 6.68 -3.12 -0.02 1.02 16 7 C -0.10 -1.06 3.66 -90.14 -0.33 -1.39 16 8 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 9 C 0.46 7.50 7.20 36.01 0.26 7.76 16 10 O -0.51 -9.39 15.28 -18.75 -0.29 -9.68 16 11 O -0.35 -6.75 10.20 -39.25 -0.40 -7.15 16 12 C 0.08 1.68 5.40 37.16 0.20 1.88 16 13 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 14 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 18 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.15 -1.66 6.40 -26.74 -0.17 -1.83 16 23 C 0.52 7.47 7.74 -10.86 -0.08 7.38 16 24 O -0.51 -9.42 17.53 5.56 0.10 -9.33 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 32 H 0.09 0.94 7.02 -51.93 -0.36 0.58 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 35 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.11 1.53 7.89 -51.93 -0.41 1.12 16 40 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -35.52 345.70 -6.13 -41.66 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.22 Total: -3.28 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 0.61 Total: 5.32 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.24 Total: -33.08 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.95 Total: -32.13 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.52 -6.13 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193020948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.638 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds