Wall clock time and date at job start Tue Mar 31 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47197 * 64.99872 * 4 3 2 6 6 C 1.46768 * 124.34675 * 90.00103 * 5 4 3 7 7 C 1.54482 * 105.47262 * 197.01726 * 6 5 4 8 8 H 1.08997 * 110.96874 * 216.42582 * 7 6 5 9 9 C 1.50701 * 110.96821 * 92.70143 * 7 6 5 10 10 O 1.20827 * 120.00313 * 0.02562 * 9 7 6 11 11 O 1.34226 * 120.00345 * 179.97438 * 9 7 6 12 12 C 1.45197 * 117.00558 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47140 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.46958 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00308 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00147 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00014 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00278 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47018 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46909 * 120.00276 * 18 16 14 21 21 H 1.48498 * 109.46943 * 240.00061 * 18 16 14 22 22 C 1.54630 * 101.76567 * 334.58655 * 7 6 5 23 23 C 1.34417 * 124.35273 * 269.70365 * 5 4 3 24 24 O 1.21281 * 124.94224 * 359.57220 * 23 5 4 25 25 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 29 29 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 30 30 H 1.08995 * 109.47203 * 184.99963 * 4 3 2 31 31 H 1.09003 * 109.47000 * 305.00424 * 4 3 2 32 32 H 1.09001 * 110.24370 * 316.01486 * 6 5 4 33 33 H 1.08996 * 110.24690 * 78.01687 * 6 5 4 34 34 H 1.09002 * 109.46934 * 299.99883 * 12 11 9 35 35 H 1.08993 * 109.47306 * 59.99706 * 12 11 9 36 36 H 1.08996 * 109.47085 * 300.00017 * 13 12 11 37 37 H 1.08999 * 109.46989 * 60.00232 * 13 12 11 38 38 H 0.96997 * 120.00214 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.48647 * 143.47634 * 22 7 6 40 40 H 1.09003 * 110.48219 * 265.98841 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.3131 1.3077 -2.4705 7 6 4.2896 0.2642 -3.6094 8 1 5.0682 0.4706 -4.3437 9 6 2.9337 0.2120 -4.2651 10 8 2.0466 0.9345 -3.8768 11 8 2.7119 -0.6363 -5.2814 12 6 1.3825 -0.6322 -5.8654 13 6 1.3209 -1.6566 -7.0002 14 6 -0.0590 -1.6527 -7.6059 15 1 -0.8164 -0.9866 -7.2198 16 6 -0.3547 -2.4995 -8.6530 17 7 0.5674 -3.3111 -9.1229 18 14 -2.0654 -2.4953 -9.4034 19 1 -2.9121 -1.4988 -8.6995 20 1 -1.9739 -2.1385 -10.8420 21 1 -2.6697 -3.8447 -9.2655 22 6 4.5841 -1.0460 -2.8426 23 6 4.1310 -0.7596 -1.4279 24 8 3.9331 -1.6019 -0.5780 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 3.9785 2.1764 0.0902 31 1 3.8508 0.5684 0.8427 32 1 3.5710 2.0845 -2.6553 33 1 5.3065 1.7474 -2.3823 34 1 0.6494 -0.8919 -5.1017 35 1 1.1615 0.3600 -6.2586 36 1 2.0540 -1.3973 -7.7639 37 1 1.5416 -2.6487 -6.6065 38 1 0.3593 -3.9071 -9.8593 39 1 4.0159 -1.8730 -3.2682 40 1 5.6512 -1.2675 -2.8620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193020948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:46 Heat of formation + Delta-G solvation = -194.944102 kcal Electronic energy + Delta-G solvation = -23069.062078 eV Core-core repulsion = 19462.078223 eV Total energy + Delta-G solvation = -3606.983855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.11745 -40.76113 -38.78904 -37.97279 -37.09836 -35.47248 -34.43916 -32.33935 -30.37721 -28.76029 -27.42427 -27.14485 -25.14376 -23.79779 -22.91308 -21.52018 -20.44325 -19.18671 -18.39349 -18.07251 -17.73131 -17.58630 -17.18331 -16.87782 -16.52349 -16.27737 -16.05528 -15.69176 -15.16026 -14.68214 -14.51699 -14.40637 -14.15570 -13.66129 -13.57055 -13.16294 -13.08911 -13.02088 -12.83798 -12.74828 -12.64204 -12.59573 -12.46511 -12.14180 -11.83543 -11.51672 -11.49352 -11.27923 -10.87209 -10.65651 -10.62931 -9.71547 -8.28326 -6.41504 1.12984 1.39740 1.40579 1.52480 1.55155 1.71758 2.05977 2.38855 2.87152 3.06208 3.21609 3.34005 3.61911 3.81644 4.06015 4.15980 4.19087 4.21663 4.30044 4.34986 4.40870 4.43252 4.47296 4.58876 4.66420 4.68017 4.72867 4.80224 4.82206 4.89673 5.25988 5.45492 5.53159 5.57718 5.73704 6.05239 6.09674 6.22998 6.68612 6.73450 7.17383 7.28418 8.84411 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020940 B = 0.003713 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.803477 B = 7539.448831 C = 8150.998046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.412 6.412 3 C 0.033 3.967 4 C 0.127 3.873 5 N -0.615 5.615 6 C 0.116 3.884 7 C -0.088 4.088 8 H 0.181 0.819 9 C 0.455 3.545 10 O -0.534 6.534 11 O -0.362 6.362 12 C 0.093 3.907 13 C 0.031 3.969 14 C -0.551 4.551 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.925 5.925 18 Si 0.972 3.028 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.141 4.141 23 C 0.507 3.493 24 O -0.569 6.569 25 H 0.063 0.937 26 H 0.032 0.968 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.011 0.989 37 H 0.003 0.997 38 H 0.268 0.732 39 H 0.090 0.910 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.044 13.584 16.228 23.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.332 6.332 3 C -0.044 4.044 4 C 0.006 3.994 5 N -0.348 5.348 6 C -0.006 4.006 7 C -0.107 4.107 8 H 0.199 0.801 9 C 0.299 3.701 10 O -0.424 6.424 11 O -0.278 6.278 12 C 0.020 3.980 13 C -0.006 4.006 14 C -0.589 4.589 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.564 5.564 18 Si 0.796 3.204 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.202 1.202 22 C -0.181 4.181 23 C 0.295 3.705 24 O -0.448 6.448 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.158 0.842 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.157 0.843 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.022 0.978 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.763 13.105 16.703 23.367 hybrid contribution -1.584 -0.209 -0.629 1.717 sum 8.179 12.896 16.074 22.172 Atomic orbital electron populations 1.22769 0.80520 1.02784 1.00384 1.87994 1.20542 1.29126 1.95495 1.23224 0.95152 0.84703 1.01318 1.21650 0.91685 1.00887 0.85167 1.48288 1.66013 1.06771 1.13759 1.22359 1.04752 0.93369 0.80107 1.22213 0.92046 0.97669 0.98774 0.80149 1.24276 0.92011 0.76411 0.77426 1.90610 1.47118 1.41981 1.62688 1.86498 1.36766 1.58212 1.46317 1.23101 0.79133 1.00664 0.95088 1.18977 0.96921 0.93067 0.91673 1.21390 0.97231 1.22675 1.17566 0.91913 1.25938 1.01890 0.94431 0.96890 1.70091 1.35594 1.23926 1.26819 0.85295 0.78538 0.78302 0.78285 1.18734 1.19813 1.20186 1.22399 1.07176 0.97452 0.91086 1.21251 0.76045 0.82778 0.90399 1.90694 1.53110 1.50639 1.50378 0.91824 0.94950 0.90305 0.93604 0.89945 0.84235 0.90352 0.89223 0.84319 0.93271 0.91841 0.97026 0.97823 0.92303 0.89177 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.41 -12.52 10.32 -148.98 -1.54 -14.05 16 3 C 0.03 0.71 6.28 71.98 0.45 1.16 16 4 C 0.13 2.22 6.33 86.38 0.55 2.76 16 5 N -0.61 -12.87 2.90 -817.98 -2.37 -15.24 16 6 C 0.12 1.66 6.68 86.83 0.58 2.24 16 7 C -0.09 -1.62 3.66 -10.48 -0.04 -1.66 16 8 H 0.18 1.73 8.14 -2.39 -0.02 1.71 16 9 C 0.45 14.32 7.20 71.24 0.51 14.83 16 10 O -0.53 -19.46 15.28 21.96 0.34 -19.12 16 11 O -0.36 -13.91 10.20 -51.38 -0.52 -14.43 16 12 C 0.09 4.19 5.40 71.98 0.39 4.58 16 13 C 0.03 1.65 5.35 29.85 0.16 1.81 16 14 C -0.55 -31.37 9.11 25.60 0.23 -31.13 16 15 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 16 C 0.01 0.44 5.46 84.65 0.46 0.90 16 17 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 18 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 C -0.14 -2.98 6.40 30.59 0.20 -2.79 16 23 C 0.51 14.16 7.74 87.90 0.68 14.84 16 24 O -0.57 -21.41 17.53 -3.03 -0.05 -21.46 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.58 7.92 -2.39 -0.02 1.56 16 32 H 0.09 1.48 7.02 -2.39 -0.02 1.46 16 33 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 2.26 8.13 -2.39 -0.02 2.24 16 35 H 0.06 2.76 8.13 -2.39 -0.02 2.74 16 36 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.00 0.19 8.14 -2.39 -0.02 0.18 16 38 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.09 2.41 7.89 -2.39 -0.02 2.39 16 40 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -81.37 345.70 4.60 -76.77 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.02 Total: 7.27 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 5.42 Total: 9.59 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -2.08 Total: -70.28 kcal Atomic # 8 Polarization: -67.29 SS G_CDS: -1.78 Total: -69.07 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -81.37 4.60 -76.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193020948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.177 kcal (2) G-P(sol) polarization free energy of solvation -81.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds