Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99795 * 2 1 4 4 C 1.53002 * 109.46949 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47184 * 65.00025 * 4 3 2 6 6 C 1.46762 * 124.34850 * 270.19433 * 5 4 3 7 7 C 1.54479 * 105.53509 * 163.21275 * 6 5 4 8 8 H 1.09002 * 110.97085 * 143.33080 * 7 6 5 9 9 C 1.50699 * 111.00097 * 267.07730 * 7 6 5 10 10 O 1.20819 * 120.00362 * 353.84768 * 9 7 6 11 11 O 1.34237 * 119.99930 * 173.85388 * 9 7 6 12 12 C 1.45194 * 116.99863 * 179.97438 * 11 9 7 13 13 C 1.53009 * 109.47031 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47309 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00003 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00245 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99877 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00258 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46895 * 60.00202 * 18 16 14 20 20 H 1.48498 * 109.47389 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47273 * 300.00456 * 18 16 14 22 22 C 1.54623 * 101.76448 * 25.20998 * 7 6 5 23 23 C 1.34417 * 124.35094 * 90.02197 * 5 4 3 24 24 O 1.21283 * 124.94355 * 0.43141 * 23 5 4 25 25 H 1.08993 * 109.47101 * 60.00483 * 1 2 3 26 26 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47427 * 299.99698 * 1 2 3 28 28 H 1.09002 * 109.47015 * 60.00407 * 3 2 1 29 29 H 1.08999 * 109.47240 * 299.99934 * 3 2 1 30 30 H 1.09002 * 109.47177 * 305.00170 * 4 3 2 31 31 H 1.08999 * 109.46974 * 184.99755 * 4 3 2 32 32 H 1.09004 * 110.38933 * 44.10688 * 6 5 4 33 33 H 1.08994 * 110.04470 * 282.14598 * 6 5 4 34 34 H 1.08998 * 109.47464 * 299.99352 * 12 11 9 35 35 H 1.09001 * 109.47307 * 60.00262 * 12 11 9 36 36 H 1.08998 * 109.46899 * 300.00226 * 13 12 11 37 37 H 1.09006 * 109.46862 * 60.00133 * 13 12 11 38 38 H 0.96996 * 120.00193 * 179.97438 * 17 16 14 39 39 H 1.09000 * 110.48720 * 216.52574 * 22 7 6 40 40 H 1.08997 * 110.48721 * 93.88170 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1341 -0.8812 -1.4498 7 6 4.1835 -1.0872 -2.9800 8 1 4.8844 -1.8789 -3.2445 9 6 2.8113 -1.3796 -3.5301 10 8 1.8792 -1.5354 -2.7774 11 8 2.6247 -1.4671 -4.8566 12 6 1.2768 -1.7518 -5.3152 13 6 1.2605 -1.8125 -6.8440 14 6 -0.1383 -2.1086 -7.3201 15 1 -0.9361 -2.2399 -6.6039 16 6 -0.3998 -2.2119 -8.6699 17 7 0.5716 -2.0525 -9.5419 18 14 -2.1339 -2.5782 -9.2600 19 1 -3.0509 -1.5054 -8.7980 20 1 -2.1497 -2.6372 -10.7437 21 1 -2.5797 -3.8824 -8.7073 22 6 4.6933 0.2889 -3.4670 23 6 4.2832 1.2461 -2.3697 24 8 4.2428 2.4532 -2.4801 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1766 0.0889 32 1 3.2860 -1.4177 -1.0242 33 1 5.0637 -1.2208 -0.9932 34 1 0.9496 -2.7092 -4.9098 35 1 0.6037 -0.9644 -4.9761 36 1 1.5875 -0.8549 -7.2492 37 1 1.9337 -2.5997 -7.1836 38 1 0.3878 -2.1255 -10.4915 39 1 4.2162 0.5610 -4.4085 40 1 5.7776 0.2768 -3.5772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193020963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = -170.951248 kcal Electronic energy + Delta-G solvation = -23121.214156 eV Core-core repulsion = 19515.270708 eV Total energy + Delta-G solvation = -3605.943447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01187 -39.49539 -37.83757 -36.63727 -35.81245 -33.62776 -33.28574 -30.37595 -29.41116 -27.82378 -26.39170 -25.33987 -23.76424 -23.00201 -21.02485 -20.21776 -19.50662 -17.80656 -17.11416 -16.64459 -16.54128 -16.02649 -15.94272 -15.76469 -15.27575 -15.07798 -14.67579 -14.48808 -13.84613 -13.52192 -13.36814 -12.96517 -12.69761 -12.39296 -12.31130 -12.25837 -12.04822 -11.83368 -11.63384 -11.22403 -11.21365 -11.05224 -10.74201 -10.70321 -10.17924 -9.93812 -9.69360 -9.65798 -9.61686 -9.32403 -8.85515 -8.45026 -6.11179 -4.15770 2.45724 2.50752 2.82158 3.06924 3.29250 3.33530 3.36833 3.70538 4.13518 4.21045 4.37724 4.62787 4.84565 4.86528 4.98374 5.08149 5.24602 5.25341 5.26219 5.30944 5.33607 5.39781 5.50464 5.61452 5.69484 5.72822 5.78947 6.06956 6.07559 6.35316 6.61863 6.92974 6.97816 7.10467 7.54272 7.61021 7.85365 8.04762 8.16483 8.24577 8.89391 9.48653 11.00261 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.003793 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.096047 B = 7381.064595 C = 8074.231706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.041 3.959 4 C 0.133 3.867 5 N -0.611 5.611 6 C 0.114 3.886 7 C -0.099 4.099 8 H 0.134 0.866 9 C 0.457 3.543 10 O -0.497 6.497 11 O -0.355 6.355 12 C 0.077 3.923 13 C 0.025 3.975 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.146 4.146 23 C 0.516 3.484 24 O -0.532 6.532 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.117 0.883 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.611 3.059 19.708 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.295 6.295 3 C -0.037 4.037 4 C 0.011 3.989 5 N -0.345 5.345 6 C -0.008 4.008 7 C -0.118 4.118 8 H 0.152 0.848 9 C 0.298 3.702 10 O -0.384 6.384 11 O -0.272 6.272 12 C 0.005 3.995 13 C -0.012 4.012 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.186 4.186 23 C 0.304 3.696 24 O -0.409 6.409 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.399 3.510 19.713 21.713 hybrid contribution -1.377 -0.074 -0.400 1.436 sum 7.022 3.436 19.314 20.836 Atomic orbital electron populations 1.22655 0.80900 1.02842 0.99331 1.87910 1.19782 1.26550 1.95294 1.22994 0.94158 0.85983 1.00601 1.21405 0.92451 0.99511 0.85583 1.48140 1.66445 1.07715 1.12155 1.22124 1.03893 0.81364 0.93467 1.21941 0.93971 1.00185 0.95726 0.84793 1.23047 0.90818 0.74160 0.82138 1.90672 1.43240 1.45222 1.59305 1.86502 1.37262 1.80545 1.22860 1.23634 0.77077 0.99742 0.99059 1.19165 0.97955 0.98792 0.85309 1.20931 0.93657 1.49973 0.92025 0.92375 1.24971 0.97464 0.94975 0.96653 1.69958 1.31860 1.49040 1.01922 0.86537 0.84211 0.79001 0.77576 1.20095 1.21091 1.20064 1.22371 1.04389 0.92053 0.99777 1.20923 0.76162 0.88331 0.84198 1.90723 1.54070 1.13610 1.82516 0.94161 0.89564 0.94748 0.92565 0.93031 0.89360 0.88520 0.87302 0.89979 0.92288 0.92503 0.95368 0.95320 0.92632 0.86496 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -4.86 9.87 -35.23 -0.35 -5.21 16 3 C 0.04 0.45 6.28 37.16 0.23 0.68 16 4 C 0.13 1.28 6.32 -4.04 -0.03 1.26 16 5 N -0.61 -7.04 2.88 -172.42 -0.50 -7.54 16 6 C 0.11 1.14 6.65 -3.12 -0.02 1.12 16 7 C -0.10 -1.08 3.65 -90.14 -0.33 -1.41 16 8 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 9 C 0.46 7.46 7.25 36.01 0.26 7.72 16 10 O -0.50 -9.20 15.26 -18.74 -0.29 -9.49 16 11 O -0.36 -6.82 10.00 -39.28 -0.39 -7.21 16 12 C 0.08 1.70 5.40 37.16 0.20 1.90 16 13 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 14 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 18 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.15 -1.64 6.40 -26.74 -0.17 -1.81 16 23 C 0.52 7.10 8.02 -10.86 -0.09 7.01 16 24 O -0.53 -9.19 17.59 5.55 0.10 -9.09 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.88 7.92 -51.93 -0.41 0.47 16 32 H 0.11 1.29 6.24 -51.93 -0.32 0.97 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.12 1.52 7.73 -51.93 -0.40 1.12 16 40 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -34.30 344.43 -6.08 -40.38 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.17 Total: -2.89 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 0.61 Total: 5.05 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.24 Total: -33.08 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.93 Total: -31.00 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.30 -6.08 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193020963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.573 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds