Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99795 * 2 1 4 4 C 1.53002 * 109.46949 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47184 * 65.00025 * 4 3 2 6 6 C 1.46762 * 124.34850 * 270.19433 * 5 4 3 7 7 C 1.54479 * 105.53509 * 163.21275 * 6 5 4 8 8 H 1.09002 * 110.97085 * 143.33080 * 7 6 5 9 9 C 1.50699 * 111.00097 * 267.07730 * 7 6 5 10 10 O 1.20819 * 120.00362 * 353.84768 * 9 7 6 11 11 O 1.34237 * 119.99930 * 173.85388 * 9 7 6 12 12 C 1.45194 * 116.99863 * 179.97438 * 11 9 7 13 13 C 1.53009 * 109.47031 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47309 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00003 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00245 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99877 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00258 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46895 * 60.00202 * 18 16 14 20 20 H 1.48498 * 109.47389 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47273 * 300.00456 * 18 16 14 22 22 C 1.54623 * 101.76448 * 25.20998 * 7 6 5 23 23 C 1.34417 * 124.35094 * 90.02197 * 5 4 3 24 24 O 1.21283 * 124.94355 * 0.43141 * 23 5 4 25 25 H 1.08993 * 109.47101 * 60.00483 * 1 2 3 26 26 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47427 * 299.99698 * 1 2 3 28 28 H 1.09002 * 109.47015 * 60.00407 * 3 2 1 29 29 H 1.08999 * 109.47240 * 299.99934 * 3 2 1 30 30 H 1.09002 * 109.47177 * 305.00170 * 4 3 2 31 31 H 1.08999 * 109.46974 * 184.99755 * 4 3 2 32 32 H 1.09004 * 110.38933 * 44.10688 * 6 5 4 33 33 H 1.08994 * 110.04470 * 282.14598 * 6 5 4 34 34 H 1.08998 * 109.47464 * 299.99352 * 12 11 9 35 35 H 1.09001 * 109.47307 * 60.00262 * 12 11 9 36 36 H 1.08998 * 109.46899 * 300.00226 * 13 12 11 37 37 H 1.09006 * 109.46862 * 60.00133 * 13 12 11 38 38 H 0.96996 * 120.00193 * 179.97438 * 17 16 14 39 39 H 1.09000 * 110.48720 * 216.52574 * 22 7 6 40 40 H 1.08997 * 110.48721 * 93.88170 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1341 -0.8812 -1.4498 7 6 4.1835 -1.0872 -2.9800 8 1 4.8844 -1.8789 -3.2445 9 6 2.8113 -1.3796 -3.5301 10 8 1.8792 -1.5354 -2.7774 11 8 2.6247 -1.4671 -4.8566 12 6 1.2768 -1.7518 -5.3152 13 6 1.2605 -1.8125 -6.8440 14 6 -0.1383 -2.1086 -7.3201 15 1 -0.9361 -2.2399 -6.6039 16 6 -0.3998 -2.2119 -8.6699 17 7 0.5716 -2.0525 -9.5419 18 14 -2.1339 -2.5782 -9.2600 19 1 -3.0509 -1.5054 -8.7980 20 1 -2.1497 -2.6372 -10.7437 21 1 -2.5797 -3.8824 -8.7073 22 6 4.6933 0.2889 -3.4670 23 6 4.2832 1.2461 -2.3697 24 8 4.2428 2.4532 -2.4801 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1766 0.0889 32 1 3.2860 -1.4177 -1.0242 33 1 5.0637 -1.2208 -0.9932 34 1 0.9496 -2.7092 -4.9098 35 1 0.6037 -0.9644 -4.9761 36 1 1.5875 -0.8549 -7.2492 37 1 1.9337 -2.5997 -7.1836 38 1 0.3878 -2.1255 -10.4915 39 1 4.2162 0.5610 -4.4085 40 1 5.7776 0.2768 -3.5772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193020963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = -194.112999 kcal Electronic energy + Delta-G solvation = -23122.218524 eV Core-core repulsion = 19515.270708 eV Total energy + Delta-G solvation = -3606.947816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.11954 -40.78564 -38.78692 -37.95239 -37.10661 -35.46204 -34.46033 -32.32702 -30.39567 -28.75115 -27.44229 -27.07249 -25.03475 -23.93776 -22.90695 -21.48582 -20.47504 -19.13446 -18.38297 -18.09029 -17.68670 -17.48042 -17.29138 -16.88749 -16.54061 -16.22927 -16.10322 -15.67900 -15.12023 -14.76007 -14.49957 -14.40788 -14.16079 -13.73960 -13.28468 -13.18581 -13.10232 -13.02758 -12.98309 -12.75965 -12.63290 -12.54768 -12.45769 -12.10402 -11.82108 -11.51880 -11.46314 -11.24429 -10.97748 -10.64222 -10.61551 -9.76444 -8.27663 -6.41041 1.19494 1.39620 1.43294 1.43465 1.51301 1.72697 2.00834 2.39294 2.83467 3.06661 3.22181 3.31267 3.64889 3.80851 4.02506 4.11502 4.20579 4.23441 4.28678 4.36551 4.44353 4.47910 4.50648 4.57242 4.67708 4.71368 4.78884 4.81675 4.85395 4.92837 5.26950 5.46165 5.49115 5.57998 5.75059 6.01004 6.05827 6.19609 6.70986 6.77306 7.05021 7.28732 8.84652 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.003793 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.096047 B = 7381.064595 C = 8074.231706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.393 6.393 3 C 0.040 3.960 4 C 0.128 3.872 5 N -0.609 5.609 6 C 0.116 3.884 7 C -0.087 4.087 8 H 0.180 0.820 9 C 0.449 3.551 10 O -0.521 6.521 11 O -0.364 6.364 12 C 0.095 3.905 13 C 0.031 3.969 14 C -0.553 4.553 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.972 3.028 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.141 4.141 23 C 0.504 3.496 24 O -0.579 6.579 25 H 0.020 0.980 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.018 0.982 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.003 0.997 37 H 0.010 0.990 38 H 0.268 0.732 39 H 0.094 0.906 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.269 2.091 21.289 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.312 6.312 3 C -0.038 4.038 4 C 0.007 3.993 5 N -0.341 5.341 6 C -0.006 4.006 7 C -0.106 4.106 8 H 0.198 0.802 9 C 0.293 3.707 10 O -0.409 6.409 11 O -0.280 6.280 12 C 0.021 3.979 13 C -0.006 4.006 14 C -0.590 4.590 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.564 5.564 18 Si 0.795 3.205 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.180 4.180 23 C 0.293 3.707 24 O -0.460 6.460 25 H 0.039 0.961 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.036 0.964 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.021 0.979 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.062 2.514 21.335 23.316 hybrid contribution -1.555 0.241 -0.813 1.771 sum 7.507 2.755 20.523 22.026 Atomic orbital electron populations 1.22703 0.80539 1.03003 0.99646 1.87876 1.20365 1.27573 1.95359 1.23078 0.95152 0.85279 1.00279 1.21621 0.91361 1.00530 0.85817 1.48329 1.65183 1.08461 1.12159 1.22347 1.05648 0.80055 0.92510 1.22191 0.90920 1.01330 0.96189 0.80234 1.24238 0.92966 0.72910 0.80628 1.90667 1.44697 1.46227 1.59357 1.86496 1.35217 1.81103 1.25215 1.23070 0.78720 0.99596 0.96480 1.18967 0.96929 0.96597 0.88087 1.21340 0.94634 1.50309 0.92749 0.91888 1.25937 1.02038 0.94420 0.96726 1.70080 1.34258 1.49716 1.02378 0.85404 0.78611 0.79268 0.77204 1.19325 1.20377 1.18882 1.22412 1.06696 0.91190 0.97749 1.21384 0.75908 0.88096 0.85352 1.90692 1.56323 1.15593 1.83403 0.96122 0.89536 0.92122 0.89836 0.96398 0.86261 0.88047 0.88996 0.84949 0.91966 0.93290 0.97859 0.97133 0.92304 0.88765 0.82170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 11.01 113.37 1.25 2.10 16 2 O -0.39 -9.83 9.87 -148.98 -1.47 -11.30 16 3 C 0.04 0.85 6.28 71.98 0.45 1.30 16 4 C 0.13 2.24 6.32 86.38 0.55 2.79 16 5 N -0.61 -12.88 2.88 -817.99 -2.36 -15.23 16 6 C 0.12 1.92 6.65 86.83 0.58 2.50 16 7 C -0.09 -1.67 3.65 -10.48 -0.04 -1.71 16 8 H 0.18 1.88 8.14 -2.39 -0.02 1.86 16 9 C 0.45 14.35 7.25 71.24 0.52 14.87 16 10 O -0.52 -19.25 15.26 21.99 0.34 -18.92 16 11 O -0.36 -14.06 10.00 -51.48 -0.51 -14.57 16 12 C 0.09 4.26 5.40 71.99 0.39 4.65 16 13 C 0.03 1.69 5.35 29.85 0.16 1.85 16 14 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 15 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 16 C 0.01 0.46 5.46 84.65 0.46 0.92 16 17 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 18 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 C -0.14 -2.90 6.40 30.59 0.20 -2.70 16 23 C 0.50 13.42 8.02 87.90 0.71 14.13 16 24 O -0.58 -20.32 17.59 -3.04 -0.05 -20.38 16 25 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.70 7.92 -2.39 -0.02 1.68 16 32 H 0.09 1.96 6.24 -2.38 -0.01 1.94 16 33 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 35 H 0.05 2.25 8.13 -2.39 -0.02 2.23 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.09 2.44 7.73 -2.39 -0.02 2.42 16 40 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -77.60 344.43 4.72 -72.88 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.02 Total: 7.58 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.45 Total: 9.40 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -2.07 Total: -70.44 kcal Atomic # 8 Polarization: -63.47 SS G_CDS: -1.70 Total: -65.18 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -77.60 4.72 -72.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193020963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.230 kcal (2) G-P(sol) polarization free energy of solvation -77.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds