Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00081 * 2 1 4 4 O 1.20831 * 120.00014 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00144 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47254 * 180.02562 * 5 3 2 7 7 C 1.37088 * 120.00135 * 96.09053 * 6 5 3 8 8 H 1.08002 * 120.00516 * 163.03384 * 7 6 5 9 9 C 1.38954 * 120.00167 * 342.75425 * 7 6 5 10 10 N 1.31415 * 119.99659 * 339.76375 * 9 7 6 11 11 Si 1.86805 * 120.00339 * 159.76214 * 9 7 6 12 12 H 1.48493 * 109.46946 * 89.99978 * 11 9 7 13 13 H 1.48502 * 109.46795 * 210.00188 * 11 9 7 14 14 H 1.48500 * 109.46746 * 329.99732 * 11 9 7 15 15 C 1.34775 * 119.99650 * 276.08724 * 6 5 3 16 16 O 1.21294 * 120.00126 * 0.02562 * 15 6 5 17 17 C 1.50696 * 119.99783 * 180.02562 * 15 6 5 18 18 C 1.53008 * 109.47032 * 180.02562 * 17 15 6 19 19 H 1.09001 * 109.52171 * 304.99111 * 18 17 15 20 20 C 1.53177 * 109.51994 * 184.87000 * 18 17 15 21 21 C 1.53185 * 109.03056 * 183.17036 * 20 18 17 22 22 C 1.53095 * 109.21118 * 56.89274 * 21 20 18 23 23 O 1.42902 * 109.41082 * 302.41906 * 22 21 20 24 24 C 1.42904 * 114.09653 * 61.16051 * 23 22 21 25 25 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46930 * 299.99471 * 1 2 3 27 27 H 1.08994 * 109.47042 * 59.99107 * 1 2 3 28 28 H 1.08999 * 109.46976 * 60.00291 * 5 3 2 29 29 H 1.09001 * 109.47269 * 300.01077 * 5 3 2 30 30 H 0.97009 * 119.99649 * 179.97438 * 10 9 7 31 31 H 1.09008 * 109.47085 * 299.99438 * 17 15 6 32 32 H 1.08996 * 109.47392 * 59.99785 * 17 15 6 33 33 H 1.09001 * 109.54858 * 302.97988 * 20 18 17 34 34 H 1.09004 * 109.54374 * 63.24644 * 20 18 17 35 35 H 1.08993 * 109.47307 * 296.98279 * 21 20 18 36 36 H 1.09004 * 109.57782 * 176.85243 * 21 20 18 37 37 H 1.09000 * 109.48137 * 182.44231 * 22 21 20 38 38 H 1.08998 * 109.49066 * 62.40731 * 22 21 20 39 39 H 1.09000 * 109.48289 * 178.85359 * 24 23 22 40 40 H 1.09009 * 109.49092 * 58.83157 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.2974 3.3006 1.1809 8 1 4.8560 4.2249 1.1726 9 6 3.8937 2.7437 2.3883 10 7 2.9040 1.8796 2.4150 11 14 4.7578 3.2234 3.9735 12 1 4.0763 4.3988 4.5726 13 1 4.7114 2.0854 4.9264 14 1 6.1727 3.5671 3.6814 15 6 4.0536 3.3617 -1.1601 16 8 3.7740 2.8125 -2.2048 17 6 4.4815 4.8067 -1.1594 18 6 4.4780 5.3403 -2.5934 19 1 5.1017 4.7032 -3.2206 20 6 5.0281 6.7698 -2.6090 21 6 4.9459 7.3211 -4.0358 22 6 3.4955 7.2501 -4.5206 23 8 3.0374 5.8982 -4.4518 24 6 3.0458 5.3456 -3.1339 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.9557 0.7810 -0.8908 29 1 3.9565 0.7804 0.8890 30 1 2.6224 1.4906 3.2578 31 1 3.7886 5.3905 -0.5533 32 1 5.4856 4.8881 -0.7434 33 1 4.4351 7.3960 -1.9423 34 1 6.0668 6.7645 -2.2784 35 1 5.5792 6.7250 -4.6927 36 1 5.2831 8.3576 -4.0469 37 1 3.4390 7.6010 -5.5510 38 1 2.8692 7.8787 -3.8876 39 1 2.6653 4.3247 -3.1653 40 1 2.4136 5.9492 -2.4825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193309464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -168.303425 kcal Electronic energy + Delta-G solvation = -23967.695016 eV Core-core repulsion = 20361.866387 eV Total energy + Delta-G solvation = -3605.828629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.64962 -39.09601 -38.04068 -35.49699 -34.63889 -33.89171 -31.70612 -31.60879 -28.88768 -27.08085 -25.95977 -24.70994 -24.49590 -22.28758 -20.33521 -19.66991 -19.15152 -16.99886 -16.58061 -16.26617 -15.91977 -15.67153 -15.42493 -15.16159 -14.61254 -14.45841 -14.42958 -13.88942 -13.56513 -13.36179 -12.56513 -12.52270 -12.33636 -12.18338 -11.96162 -11.57141 -11.32182 -11.30338 -11.20698 -10.96171 -10.82581 -10.64798 -10.49532 -10.46154 -10.27170 -9.94050 -9.81152 -9.57014 -9.09568 -9.02450 -8.50404 -7.97617 -6.53844 -4.02925 3.04673 3.15575 3.18708 3.48162 3.69756 3.99120 4.06291 4.23801 4.60748 4.95018 5.00112 5.05943 5.16385 5.30396 5.48442 5.64197 5.70742 5.75954 5.79020 5.90137 5.95494 5.97554 6.01593 6.09512 6.13210 6.19683 6.27463 6.37314 6.40193 6.50748 6.64478 6.78347 6.80093 7.30824 7.46396 7.57280 7.58880 8.20193 8.94724 9.11059 9.34518 9.75629 10.53534 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.005948 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.350099 B = 4706.379083 C = 6084.039397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.500 6.500 5 C 0.156 3.844 6 N -0.430 5.430 7 C -0.336 4.336 8 H 0.104 0.896 9 C 0.037 3.963 10 N -0.869 5.869 11 Si 0.924 3.076 12 H -0.278 1.278 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.469 3.531 16 O -0.599 6.599 17 C -0.113 4.113 18 C -0.102 4.102 19 H 0.082 0.918 20 C -0.119 4.119 21 C -0.154 4.154 22 C 0.058 3.942 23 O -0.384 6.384 24 C 0.064 3.936 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.272 0.728 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.117 0.883 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 4.181 -4.354 6.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.327 3.673 4 O -0.385 6.385 5 C 0.030 3.970 6 N -0.148 5.148 7 C -0.463 4.463 8 H 0.122 0.878 9 C -0.168 4.168 10 N -0.507 5.507 11 Si 0.751 3.249 12 H -0.204 1.204 13 H -0.207 1.207 14 H -0.193 1.193 15 C 0.259 3.741 16 O -0.485 6.485 17 C -0.152 4.152 18 C -0.122 4.122 19 H 0.100 0.900 20 C -0.156 4.156 21 C -0.191 4.191 22 C -0.020 4.020 23 O -0.303 6.303 24 C -0.012 4.012 25 H 0.104 0.896 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.135 0.865 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.614 3.995 -4.848 6.486 hybrid contribution 0.090 0.493 1.523 1.604 sum 1.704 4.488 -3.325 5.839 Atomic orbital electron populations 1.22930 0.78727 1.01794 1.01631 1.86457 1.21674 1.35542 1.85701 1.23962 0.92289 0.80544 0.70542 1.90508 1.66510 1.36375 1.45094 1.20466 0.87203 0.85804 1.03499 1.43425 1.57100 1.08033 1.06283 1.19624 1.34368 1.10000 0.82288 0.87833 1.25231 0.94823 0.97062 0.99671 1.69841 1.22774 1.30147 1.27919 0.85975 0.79794 0.78258 0.80916 1.20374 1.20656 1.19297 1.20229 0.81944 0.88359 0.83611 1.90513 1.55631 1.70503 1.31896 1.21374 1.02888 0.94668 0.96316 1.21501 0.98317 0.95560 0.96780 0.89965 1.21673 1.01397 0.96374 0.96179 1.22169 0.98128 1.01160 0.97669 1.22518 0.93675 0.84734 1.01032 1.87949 1.85882 1.26777 1.29702 1.22905 0.95288 1.00494 0.82502 0.89625 0.92645 0.93134 0.90054 0.86004 0.91690 0.89621 0.89832 0.91950 0.91580 0.91228 0.91438 0.89643 0.93708 0.86480 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.19 10.57 -39.25 -0.41 -8.61 16 3 C 0.49 12.06 6.13 36.00 0.22 12.28 16 4 O -0.50 -13.86 15.77 -18.75 -0.30 -14.16 16 5 C 0.16 3.72 5.13 -5.19 -0.03 3.70 16 6 N -0.43 -10.57 2.18 -116.10 -0.25 -10.82 16 7 C -0.34 -8.18 9.15 -14.94 -0.14 -8.32 16 8 H 0.10 2.35 6.55 -52.49 -0.34 2.00 16 9 C 0.04 0.90 4.90 -17.46 -0.09 0.81 16 10 N -0.87 -22.21 9.23 55.50 0.51 -21.70 16 11 Si 0.92 18.81 29.60 -169.99 -5.03 13.78 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 15 C 0.47 11.02 7.15 -10.99 -0.08 10.94 16 16 O -0.60 -15.17 13.66 5.54 0.08 -15.09 16 17 C -0.11 -2.16 3.63 -27.88 -0.10 -2.26 16 18 C -0.10 -1.77 2.03 -90.48 -0.18 -1.96 16 19 H 0.08 1.53 7.96 -51.93 -0.41 1.12 16 20 C -0.12 -1.62 5.32 -26.54 -0.14 -1.76 16 21 C -0.15 -1.87 6.13 -26.59 -0.16 -2.03 16 22 C 0.06 0.77 6.84 37.21 0.25 1.02 16 23 O -0.38 -6.79 10.77 -35.23 -0.38 -7.17 16 24 C 0.06 1.20 5.84 37.20 0.22 1.42 16 25 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 27 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.08 1.82 7.61 -51.93 -0.40 1.42 16 29 H 0.12 2.88 6.36 -51.93 -0.33 2.55 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.09 1.66 8.10 -51.92 -0.42 1.24 16 32 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.12 2.58 6.02 -51.93 -0.31 2.27 16 40 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -30.52 325.91 -6.01 -36.53 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.98 Total: 6.65 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 0.84 Total: 15.67 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.26 Total: -32.52 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -1.01 Total: -45.03 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.52 -6.01 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193309464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.776 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds