Wall clock time and date at job start Tue Mar 31 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00081 * 2 1 4 4 O 1.20831 * 120.00014 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00144 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47254 * 180.02562 * 5 3 2 7 7 C 1.37088 * 120.00135 * 96.09053 * 6 5 3 8 8 H 1.08002 * 120.00516 * 163.03384 * 7 6 5 9 9 C 1.38954 * 120.00167 * 342.75425 * 7 6 5 10 10 N 1.31415 * 119.99659 * 339.76375 * 9 7 6 11 11 Si 1.86805 * 120.00339 * 159.76214 * 9 7 6 12 12 H 1.48493 * 109.46946 * 89.99978 * 11 9 7 13 13 H 1.48502 * 109.46795 * 210.00188 * 11 9 7 14 14 H 1.48500 * 109.46746 * 329.99732 * 11 9 7 15 15 C 1.34775 * 119.99650 * 276.08724 * 6 5 3 16 16 O 1.21294 * 120.00126 * 0.02562 * 15 6 5 17 17 C 1.50696 * 119.99783 * 180.02562 * 15 6 5 18 18 C 1.53008 * 109.47032 * 180.02562 * 17 15 6 19 19 H 1.09001 * 109.52171 * 304.99111 * 18 17 15 20 20 C 1.53177 * 109.51994 * 184.87000 * 18 17 15 21 21 C 1.53185 * 109.03056 * 183.17036 * 20 18 17 22 22 C 1.53095 * 109.21118 * 56.89274 * 21 20 18 23 23 O 1.42902 * 109.41082 * 302.41906 * 22 21 20 24 24 C 1.42904 * 114.09653 * 61.16051 * 23 22 21 25 25 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46930 * 299.99471 * 1 2 3 27 27 H 1.08994 * 109.47042 * 59.99107 * 1 2 3 28 28 H 1.08999 * 109.46976 * 60.00291 * 5 3 2 29 29 H 1.09001 * 109.47269 * 300.01077 * 5 3 2 30 30 H 0.97009 * 119.99649 * 179.97438 * 10 9 7 31 31 H 1.09008 * 109.47085 * 299.99438 * 17 15 6 32 32 H 1.08996 * 109.47392 * 59.99785 * 17 15 6 33 33 H 1.09001 * 109.54858 * 302.97988 * 20 18 17 34 34 H 1.09004 * 109.54374 * 63.24644 * 20 18 17 35 35 H 1.08993 * 109.47307 * 296.98279 * 21 20 18 36 36 H 1.09004 * 109.57782 * 176.85243 * 21 20 18 37 37 H 1.09000 * 109.48137 * 182.44231 * 22 21 20 38 38 H 1.08998 * 109.49066 * 62.40731 * 22 21 20 39 39 H 1.09000 * 109.48289 * 178.85359 * 24 23 22 40 40 H 1.09009 * 109.49092 * 58.83157 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.2974 3.3006 1.1809 8 1 4.8560 4.2249 1.1726 9 6 3.8937 2.7437 2.3883 10 7 2.9040 1.8796 2.4150 11 14 4.7578 3.2234 3.9735 12 1 4.0763 4.3988 4.5726 13 1 4.7114 2.0854 4.9264 14 1 6.1727 3.5671 3.6814 15 6 4.0536 3.3617 -1.1601 16 8 3.7740 2.8125 -2.2048 17 6 4.4815 4.8067 -1.1594 18 6 4.4780 5.3403 -2.5934 19 1 5.1017 4.7032 -3.2206 20 6 5.0281 6.7698 -2.6090 21 6 4.9459 7.3211 -4.0358 22 6 3.4955 7.2501 -4.5206 23 8 3.0374 5.8982 -4.4518 24 6 3.0458 5.3456 -3.1339 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.9557 0.7810 -0.8908 29 1 3.9565 0.7804 0.8890 30 1 2.6224 1.4906 3.2578 31 1 3.7886 5.3905 -0.5533 32 1 5.4856 4.8881 -0.7434 33 1 4.4351 7.3960 -1.9423 34 1 6.0668 6.7645 -2.2784 35 1 5.5792 6.7250 -4.6927 36 1 5.2831 8.3576 -4.0469 37 1 3.4390 7.6010 -5.5510 38 1 2.8692 7.8787 -3.8876 39 1 2.6653 4.3247 -3.1653 40 1 2.4136 5.9492 -2.4825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193309464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:13 Heat of formation + Delta-G solvation = -186.987471 kcal Electronic energy + Delta-G solvation = -23968.505217 eV Core-core repulsion = 20361.866387 eV Total energy + Delta-G solvation = -3606.638830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42322 -40.66331 -39.66599 -37.32678 -36.53768 -35.27248 -33.48589 -32.93320 -30.62318 -28.57056 -27.61612 -26.33493 -25.89526 -23.60038 -22.05493 -21.07639 -20.88220 -18.79960 -18.45656 -18.03809 -17.35892 -17.14043 -17.05686 -16.82439 -16.18255 -16.08859 -15.93111 -15.21239 -15.08542 -14.90600 -14.24849 -14.17714 -13.80615 -13.49678 -13.38730 -13.26492 -13.07626 -12.86686 -12.66734 -12.52458 -12.37190 -12.08989 -12.06302 -11.84227 -11.60505 -11.58625 -11.50369 -11.19592 -10.93262 -10.40440 -10.28002 -9.86867 -8.37408 -5.92904 1.42097 1.50824 1.62686 1.69365 1.80411 2.25334 2.34359 2.85126 3.02895 3.13827 3.87114 3.88431 3.92873 4.08730 4.21377 4.26499 4.33705 4.36657 4.39521 4.44335 4.54592 4.62528 4.67764 4.72650 4.79211 4.83272 4.83984 4.92406 5.01891 5.13177 5.17798 5.34648 5.46672 5.47549 5.63503 5.74814 6.30273 6.34339 7.08212 7.20896 7.50124 7.91394 8.70058 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.005948 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.350099 B = 4706.379083 C = 6084.039397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.486 3.514 4 O -0.538 6.538 5 C 0.153 3.847 6 N -0.442 5.442 7 C -0.352 4.352 8 H 0.119 0.881 9 C -0.006 4.006 10 N -0.899 5.899 11 Si 0.995 3.005 12 H -0.280 1.280 13 H -0.283 1.283 14 H -0.254 1.254 15 C 0.455 3.545 16 O -0.625 6.625 17 C -0.104 4.104 18 C -0.095 4.095 19 H 0.064 0.936 20 C -0.114 4.114 21 C -0.148 4.148 22 C 0.046 3.954 23 O -0.407 6.407 24 C 0.071 3.929 25 H 0.134 0.866 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.271 0.729 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 5.740 -3.951 7.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.330 3.670 4 O -0.426 6.426 5 C 0.027 3.973 6 N -0.161 5.161 7 C -0.479 4.479 8 H 0.137 0.863 9 C -0.208 4.208 10 N -0.537 5.537 11 Si 0.819 3.181 12 H -0.206 1.206 13 H -0.209 1.209 14 H -0.178 1.178 15 C 0.246 3.754 16 O -0.513 6.513 17 C -0.143 4.143 18 C -0.114 4.114 19 H 0.083 0.917 20 C -0.151 4.151 21 C -0.186 4.186 22 C -0.030 4.030 23 O -0.327 6.327 24 C -0.006 4.006 25 H 0.152 0.848 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.840 5.546 -4.458 7.661 hybrid contribution -0.395 -0.050 1.315 1.374 sum 2.445 5.496 -3.142 6.787 Atomic orbital electron populations 1.23289 0.76224 1.04865 1.01149 1.86425 1.24114 1.33910 1.85044 1.24126 0.92690 0.80742 0.69491 1.90474 1.67364 1.37678 1.47044 1.20514 0.86992 0.86216 1.03579 1.43693 1.57223 1.08294 1.06853 1.20076 1.34643 1.10768 0.82410 0.86305 1.26131 0.95020 0.96965 1.02642 1.69956 1.23991 1.31350 1.28441 0.84898 0.79165 0.77435 0.76595 1.20642 1.20898 1.17769 1.21065 0.81347 0.89990 0.82978 1.90492 1.56568 1.71503 1.32740 1.21376 1.03661 0.91512 0.97783 1.21425 0.97180 0.97922 0.94912 0.91734 1.21673 1.02304 0.93497 0.97671 1.22159 0.97111 1.03020 0.96288 1.22876 0.94667 0.82506 1.02952 1.87904 1.86534 1.29400 1.28817 1.22602 0.96230 0.98365 0.83379 0.84763 0.93596 0.93195 0.89409 0.86167 0.91918 0.89762 0.87734 0.91019 0.89739 0.91597 0.88035 0.87294 0.92696 0.90806 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.53 16 2 O -0.38 -16.61 10.57 -51.39 -0.54 -17.15 16 3 C 0.49 24.80 6.13 71.24 0.44 25.24 16 4 O -0.54 -30.76 15.77 21.95 0.35 -30.41 16 5 C 0.15 7.49 5.13 85.63 0.44 7.93 16 6 N -0.44 -22.10 2.18 -639.61 -1.39 -23.49 16 7 C -0.35 -17.10 9.15 84.04 0.77 -16.33 16 8 H 0.12 5.23 6.55 -2.91 -0.02 5.22 16 9 C -0.01 -0.29 4.90 84.93 0.42 0.13 16 10 N -0.90 -46.41 9.23 21.66 0.20 -46.21 16 11 Si 1.00 37.97 29.60 68.60 2.03 40.00 16 12 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 13 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 14 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 15 C 0.45 21.84 7.15 87.66 0.63 22.47 16 16 O -0.62 -32.87 13.66 -3.07 -0.04 -32.91 16 17 C -0.10 -3.93 3.63 29.85 0.11 -3.82 16 18 C -0.10 -3.24 2.03 -10.70 -0.02 -3.26 16 19 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 20 C -0.11 -2.80 5.32 30.72 0.16 -2.63 16 21 C -0.15 -3.14 6.13 30.69 0.19 -2.95 16 22 C 0.05 1.12 6.84 72.01 0.49 1.61 16 23 O -0.41 -14.31 10.77 -148.98 -1.60 -15.91 16 24 C 0.07 2.70 5.84 72.01 0.42 3.12 16 25 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 26 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 27 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 28 H 0.09 4.07 7.61 -2.39 -0.02 4.05 16 29 H 0.12 5.85 6.36 -2.39 -0.02 5.83 16 30 H 0.27 13.41 8.31 -92.70 -0.77 12.64 16 31 H 0.08 3.22 8.10 -2.38 -0.02 3.20 16 32 H 0.10 3.49 7.69 -2.39 -0.02 3.47 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 3.45 6.02 -2.39 -0.01 3.43 16 40 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -67.74 325.91 5.26 -62.48 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 1.03 Total: 29.58 kcal Atomic # 6 Polarization: 28.80 SS G_CDS: 5.24 Total: 34.03 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.19 Total: -69.70 kcal Atomic # 8 Polarization: -94.54 SS G_CDS: -1.84 Total: -96.39 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -67.74 5.26 -62.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193309464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.507 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds