Wall clock time and date at job start Tue Mar 31 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00013 * 2 1 4 4 O 1.20822 * 120.00144 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99706 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47007 * 179.45853 * 5 3 2 7 7 C 1.37099 * 119.99863 * 95.40956 * 6 5 3 8 8 H 1.07994 * 119.99714 * 213.33976 * 7 6 5 9 9 C 1.38946 * 120.00055 * 33.33486 * 7 6 5 10 10 N 1.31412 * 120.00174 * 212.44868 * 9 7 6 11 11 Si 1.86801 * 120.00074 * 32.45202 * 9 7 6 12 12 H 1.48497 * 109.47042 * 94.96470 * 11 9 7 13 13 H 1.48508 * 109.46814 * 334.97117 * 11 9 7 14 14 H 1.48493 * 109.47133 * 214.96942 * 11 9 7 15 15 C 1.34775 * 119.99778 * 275.40922 * 6 5 3 16 16 O 1.21288 * 120.00440 * 359.97438 * 15 6 5 17 17 C 1.50698 * 119.99617 * 180.02562 * 15 6 5 18 18 C 1.53003 * 109.46903 * 180.02562 * 17 15 6 19 19 H 1.08994 * 109.52586 * 54.87236 * 18 17 15 20 20 C 1.53181 * 109.52217 * 175.00005 * 18 17 15 21 21 C 1.53169 * 109.03821 * 176.88126 * 20 18 17 22 22 C 1.53093 * 109.16520 * 303.01834 * 21 20 18 23 23 O 1.42909 * 109.41018 * 57.60872 * 22 21 20 24 24 C 1.42897 * 114.09531 * 298.83849 * 23 22 21 25 25 H 1.09003 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46798 * 299.99801 * 1 2 3 27 27 H 1.08998 * 109.47290 * 59.99547 * 1 2 3 28 28 H 1.08999 * 109.47052 * 59.46013 * 5 3 2 29 29 H 1.08998 * 109.47520 * 299.46015 * 5 3 2 30 30 H 0.96996 * 119.99985 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47152 * 299.99607 * 17 15 6 32 32 H 1.08991 * 109.47528 * 59.99987 * 17 15 6 33 33 H 1.08999 * 109.54062 * 296.74978 * 20 18 17 34 34 H 1.09003 * 109.54240 * 57.01674 * 20 18 17 35 35 H 1.09003 * 109.52308 * 62.92357 * 21 20 18 36 36 H 1.09006 * 109.52650 * 183.04915 * 21 20 18 37 37 H 1.09003 * 109.48340 * 177.58551 * 22 21 20 38 38 H 1.09000 * 109.48167 * 297.61227 * 22 21 20 39 39 H 1.08996 * 109.48275 * 301.17871 * 24 23 22 40 40 H 1.09011 * 109.47759 * 181.14490 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 -0.0126 7 6 4.2824 3.3166 1.1636 8 1 4.0669 4.3686 1.2784 9 6 4.8642 2.6086 2.2081 10 7 4.5959 2.9345 3.4526 11 14 6.0279 1.1936 1.8433 12 1 7.4286 1.6863 1.8658 13 1 5.7216 0.6340 0.5022 14 1 5.8585 0.1358 2.8715 15 6 4.0683 3.3458 -1.1810 16 8 3.8028 2.7822 -2.2216 17 6 4.4962 4.7907 -1.1946 18 6 4.5110 5.3046 -2.6356 19 1 3.5365 5.1343 -3.0931 20 6 4.8241 6.8041 -2.6411 21 6 4.9132 7.2906 -4.0907 22 6 5.9748 6.4728 -4.8310 23 8 5.6394 5.0854 -4.7613 24 6 5.5882 4.5636 -3.4320 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.9568 0.7721 -0.8843 29 1 3.9553 0.7893 0.8956 30 1 5.0018 2.4400 4.1817 31 1 3.7959 5.3826 -0.6053 32 1 5.4950 4.8779 -0.7671 33 1 4.0312 7.3440 -2.1233 34 1 5.7752 6.9799 -2.1384 35 1 3.9472 7.1603 -4.5787 36 1 5.1891 8.3451 -4.1049 37 1 6.0124 6.7857 -5.8745 38 1 6.9477 6.6356 -4.3673 39 1 6.5560 4.7012 -2.9499 40 1 5.3474 3.5010 -3.4677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193309477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:16 Heat of formation + Delta-G solvation = -161.226000 kcal Electronic energy + Delta-G solvation = -23772.816081 eV Core-core repulsion = 20167.294353 eV Total energy + Delta-G solvation = -3605.521729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.05296 -39.37956 -38.29966 -35.92617 -34.94952 -33.96501 -32.14474 -31.76021 -29.23876 -27.34129 -26.11120 -24.86297 -24.63154 -22.36890 -20.83551 -19.78220 -19.05388 -17.45038 -17.12075 -16.49334 -16.00646 -15.85818 -15.76231 -15.36284 -15.16501 -14.69402 -14.26545 -14.00415 -13.80335 -13.32398 -13.01492 -12.82680 -12.65437 -12.38728 -12.11448 -11.97984 -11.78914 -11.44482 -11.26994 -11.04274 -10.97238 -10.82936 -10.53259 -10.40262 -10.32537 -10.14613 -10.00498 -9.77651 -9.30805 -9.14259 -8.65936 -8.03735 -6.68873 -4.14677 2.87193 3.00225 3.02564 3.12481 3.20424 3.70344 3.97254 4.14690 4.29744 4.78012 4.96914 5.03539 5.09961 5.24743 5.38481 5.42575 5.46491 5.48628 5.59299 5.69902 5.73075 5.80678 5.87273 5.89977 5.96492 5.99695 6.07166 6.14461 6.22418 6.32971 6.48409 6.64676 6.75868 6.87458 7.08396 7.49713 7.88860 8.11478 8.41869 8.80200 9.18538 9.52184 10.41690 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.005763 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.285767 B = 4857.690643 C = 5806.861903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.447 3.553 4 O -0.491 6.491 5 C 0.122 3.878 6 N -0.445 5.445 7 C -0.355 4.355 8 H 0.107 0.893 9 C 0.071 3.929 10 N -0.833 5.833 11 Si 0.848 3.152 12 H -0.272 1.272 13 H -0.253 1.253 14 H -0.277 1.277 15 C 0.487 3.513 16 O -0.591 6.591 17 C -0.110 4.110 18 C -0.105 4.105 19 H 0.082 0.918 20 C -0.119 4.119 21 C -0.154 4.154 22 C 0.058 3.942 23 O -0.384 6.384 24 C 0.063 3.937 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.277 0.723 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 1.512 -7.566 7.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.287 3.713 4 O -0.375 6.375 5 C -0.003 4.003 6 N -0.165 5.165 7 C -0.481 4.481 8 H 0.124 0.876 9 C -0.139 4.139 10 N -0.466 5.466 11 Si 0.671 3.329 12 H -0.198 1.198 13 H -0.177 1.177 14 H -0.202 1.202 15 C 0.279 3.721 16 O -0.476 6.476 17 C -0.150 4.150 18 C -0.124 4.124 19 H 0.100 0.900 20 C -0.156 4.156 21 C -0.192 4.192 22 C -0.019 4.019 23 O -0.303 6.303 24 C -0.013 4.013 25 H 0.112 0.888 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.288 1.414 -7.984 8.113 hybrid contribution 0.346 -0.393 0.678 0.856 sum 0.634 1.021 -7.307 7.405 Atomic orbital electron populations 1.23124 0.77654 1.02774 1.02209 1.86521 1.22609 1.34635 1.84967 1.24925 0.93047 0.81152 0.72146 1.90605 1.66661 1.36297 1.43978 1.21436 0.86165 0.88180 1.04561 1.43391 1.57674 1.08469 1.06971 1.19000 1.42529 0.97436 0.89125 0.87571 1.25305 0.96504 0.97622 0.94438 1.69957 1.36932 1.40652 0.99053 0.87463 0.83206 0.82434 0.79746 1.19781 1.17680 1.20245 1.20438 0.79768 0.89339 0.82582 1.90528 1.54732 1.70211 1.32099 1.21356 1.03748 0.93777 0.96139 1.21545 1.01112 0.94030 0.95753 0.89953 1.21663 1.02072 0.95891 0.95992 1.22172 1.00618 0.99563 0.96828 1.22525 0.96384 0.82569 1.00417 1.87945 1.90920 1.23349 1.28087 1.22912 0.96491 1.00110 0.81814 0.88770 0.92246 0.92382 0.87371 0.87646 0.91256 0.89237 0.89050 0.91471 0.91795 0.91232 0.91353 0.89609 0.93622 0.94024 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.99 10.57 -39.26 -0.41 -7.40 16 3 C 0.45 9.94 7.99 36.01 0.29 10.23 16 4 O -0.49 -12.24 16.07 -18.75 -0.30 -12.54 16 5 C 0.12 2.70 4.05 -5.19 -0.02 2.68 16 6 N -0.44 -10.52 1.77 -116.10 -0.20 -10.72 16 7 C -0.35 -8.92 9.07 -14.93 -0.14 -9.05 16 8 H 0.11 2.80 7.09 -52.49 -0.37 2.43 16 9 C 0.07 1.78 5.08 -17.47 -0.09 1.69 16 10 N -0.83 -21.99 13.96 55.50 0.77 -21.21 16 11 Si 0.85 18.30 26.17 -169.99 -4.45 13.86 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.25 -5.20 5.57 56.52 0.31 -4.88 16 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 15 C 0.49 11.00 7.19 -10.99 -0.08 10.92 16 16 O -0.59 -14.12 13.66 5.55 0.08 -14.05 16 17 C -0.11 -2.08 3.83 -27.88 -0.11 -2.18 16 18 C -0.11 -1.77 2.03 -90.48 -0.18 -1.95 16 19 H 0.08 1.54 7.95 -51.93 -0.41 1.13 16 20 C -0.12 -1.60 5.31 -26.55 -0.14 -1.74 16 21 C -0.15 -1.84 6.14 -26.60 -0.16 -2.00 16 22 C 0.06 0.73 6.84 37.21 0.25 0.99 16 23 O -0.38 -6.36 10.77 -35.23 -0.38 -6.74 16 24 C 0.06 1.07 5.84 37.20 0.22 1.29 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 27 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.11 2.23 7.56 -51.93 -0.39 1.84 16 29 H 0.11 2.27 4.04 -51.93 -0.21 2.06 16 30 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.09 1.69 7.64 -51.93 -0.40 1.29 16 32 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.12 2.23 6.04 -51.92 -0.31 1.92 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -30.16 324.78 -5.06 -35.22 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.97 Total: 6.23 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 0.91 Total: 12.47 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.57 Total: -31.94 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.02 Total: -40.73 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -4.45 Total: 13.86 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.16 -5.06 -35.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193309477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.006 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds