Wall clock time and date at job start Tue Mar 31 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00013 * 2 1 4 4 O 1.20822 * 120.00144 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99706 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47007 * 179.45853 * 5 3 2 7 7 C 1.37099 * 119.99863 * 95.40956 * 6 5 3 8 8 H 1.07994 * 119.99714 * 213.33976 * 7 6 5 9 9 C 1.38946 * 120.00055 * 33.33486 * 7 6 5 10 10 N 1.31412 * 120.00174 * 212.44868 * 9 7 6 11 11 Si 1.86801 * 120.00074 * 32.45202 * 9 7 6 12 12 H 1.48497 * 109.47042 * 94.96470 * 11 9 7 13 13 H 1.48508 * 109.46814 * 334.97117 * 11 9 7 14 14 H 1.48493 * 109.47133 * 214.96942 * 11 9 7 15 15 C 1.34775 * 119.99778 * 275.40922 * 6 5 3 16 16 O 1.21288 * 120.00440 * 359.97438 * 15 6 5 17 17 C 1.50698 * 119.99617 * 180.02562 * 15 6 5 18 18 C 1.53003 * 109.46903 * 180.02562 * 17 15 6 19 19 H 1.08994 * 109.52586 * 54.87236 * 18 17 15 20 20 C 1.53181 * 109.52217 * 175.00005 * 18 17 15 21 21 C 1.53169 * 109.03821 * 176.88126 * 20 18 17 22 22 C 1.53093 * 109.16520 * 303.01834 * 21 20 18 23 23 O 1.42909 * 109.41018 * 57.60872 * 22 21 20 24 24 C 1.42897 * 114.09531 * 298.83849 * 23 22 21 25 25 H 1.09003 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46798 * 299.99801 * 1 2 3 27 27 H 1.08998 * 109.47290 * 59.99547 * 1 2 3 28 28 H 1.08999 * 109.47052 * 59.46013 * 5 3 2 29 29 H 1.08998 * 109.47520 * 299.46015 * 5 3 2 30 30 H 0.96996 * 119.99985 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47152 * 299.99607 * 17 15 6 32 32 H 1.08991 * 109.47528 * 59.99987 * 17 15 6 33 33 H 1.08999 * 109.54062 * 296.74978 * 20 18 17 34 34 H 1.09003 * 109.54240 * 57.01674 * 20 18 17 35 35 H 1.09003 * 109.52308 * 62.92357 * 21 20 18 36 36 H 1.09006 * 109.52650 * 183.04915 * 21 20 18 37 37 H 1.09003 * 109.48340 * 177.58551 * 22 21 20 38 38 H 1.09000 * 109.48167 * 297.61227 * 22 21 20 39 39 H 1.08996 * 109.48275 * 301.17871 * 24 23 22 40 40 H 1.09011 * 109.47759 * 181.14490 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 -0.0126 7 6 4.2824 3.3166 1.1636 8 1 4.0669 4.3686 1.2784 9 6 4.8642 2.6086 2.2081 10 7 4.5959 2.9345 3.4526 11 14 6.0279 1.1936 1.8433 12 1 7.4286 1.6863 1.8658 13 1 5.7216 0.6340 0.5022 14 1 5.8585 0.1358 2.8715 15 6 4.0683 3.3458 -1.1810 16 8 3.8028 2.7822 -2.2216 17 6 4.4962 4.7907 -1.1946 18 6 4.5110 5.3046 -2.6356 19 1 3.5365 5.1343 -3.0931 20 6 4.8241 6.8041 -2.6411 21 6 4.9132 7.2906 -4.0907 22 6 5.9748 6.4728 -4.8310 23 8 5.6394 5.0854 -4.7613 24 6 5.5882 4.5636 -3.4320 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.9568 0.7721 -0.8843 29 1 3.9553 0.7893 0.8956 30 1 5.0018 2.4400 4.1817 31 1 3.7959 5.3826 -0.6053 32 1 5.4950 4.8779 -0.7671 33 1 4.0312 7.3440 -2.1233 34 1 5.7752 6.9799 -2.1384 35 1 3.9472 7.1603 -4.5787 36 1 5.1891 8.3451 -4.1049 37 1 6.0124 6.7857 -5.8745 38 1 6.9477 6.6356 -4.3673 39 1 6.5560 4.7012 -2.9499 40 1 5.3474 3.5010 -3.4677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193309477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:16 Heat of formation + Delta-G solvation = -180.274637 kcal Electronic energy + Delta-G solvation = -23773.642092 eV Core-core repulsion = 20167.294353 eV Total energy + Delta-G solvation = -3606.347740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.75354 -40.84213 -39.78042 -37.59376 -36.76249 -35.29825 -34.05062 -32.95676 -30.84699 -28.69397 -27.64949 -26.57366 -25.87386 -23.63683 -22.42080 -21.06256 -20.82143 -19.17444 -18.86255 -18.19958 -17.46108 -17.26207 -17.12476 -16.99319 -16.77377 -16.02176 -15.89669 -15.36904 -15.11485 -14.85846 -14.61450 -14.40946 -14.29561 -13.59274 -13.52225 -13.44260 -13.27550 -12.99553 -12.77796 -12.66512 -12.52871 -12.07685 -11.93667 -11.85987 -11.83161 -11.64201 -11.55487 -11.19346 -11.09903 -10.46355 -10.32528 -9.91762 -8.60719 -6.10567 1.12874 1.27419 1.35127 1.44003 1.51168 1.96246 2.17360 2.54542 2.93426 3.04614 3.80708 3.86488 3.90376 3.95523 4.00765 4.08318 4.19164 4.26777 4.28385 4.29304 4.40005 4.49072 4.62322 4.62408 4.74815 4.79296 4.84190 4.92169 5.02869 5.11475 5.16571 5.21286 5.29709 5.35499 5.46568 6.01283 6.15222 6.33769 6.72014 6.89866 7.31271 7.68692 8.53609 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.005763 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.285767 B = 4857.690643 C = 5806.861903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.448 3.552 4 O -0.527 6.527 5 C 0.113 3.887 6 N -0.454 5.454 7 C -0.360 4.360 8 H 0.082 0.918 9 C 0.035 3.965 10 N -0.874 5.874 11 Si 0.904 3.096 12 H -0.269 1.269 13 H -0.238 1.238 14 H -0.269 1.269 15 C 0.480 3.520 16 O -0.607 6.607 17 C -0.104 4.104 18 C -0.099 4.099 19 H 0.055 0.945 20 C -0.116 4.116 21 C -0.149 4.149 22 C 0.049 3.951 23 O -0.406 6.406 24 C 0.069 3.931 25 H 0.141 0.859 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.283 0.717 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 1.255 -8.373 8.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.290 3.710 4 O -0.415 6.415 5 C -0.012 4.012 6 N -0.175 5.175 7 C -0.487 4.487 8 H 0.100 0.900 9 C -0.172 4.172 10 N -0.508 5.508 11 Si 0.726 3.274 12 H -0.195 1.195 13 H -0.162 1.162 14 H -0.194 1.194 15 C 0.272 3.728 16 O -0.493 6.493 17 C -0.144 4.144 18 C -0.118 4.118 19 H 0.074 0.926 20 C -0.153 4.153 21 C -0.187 4.187 22 C -0.027 4.027 23 O -0.325 6.325 24 C -0.008 4.008 25 H 0.159 0.841 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.189 1.137 -8.803 8.955 hybrid contribution -0.048 -0.320 0.893 0.950 sum 1.141 0.816 -7.910 8.034 Atomic orbital electron populations 1.23543 0.75024 1.05850 1.02079 1.86490 1.25067 1.32529 1.84117 1.24907 0.93231 0.81545 0.71324 1.90586 1.67422 1.37633 1.45880 1.21575 0.86561 0.87669 1.05413 1.43473 1.58200 1.09114 1.06728 1.18840 1.43215 0.96802 0.89818 0.90044 1.25879 0.97161 1.00221 0.93909 1.70007 1.38116 1.42642 1.00041 0.86554 0.80798 0.79709 0.80377 1.19481 1.16191 1.19378 1.21088 0.79035 0.90596 0.82051 1.90512 1.55291 1.70946 1.32523 1.21368 1.03912 0.91410 0.97690 1.21466 0.99849 0.96581 0.93900 0.92608 1.21667 1.02912 0.93122 0.97639 1.22164 1.00151 1.01185 0.95195 1.22840 0.97179 0.80490 1.02195 1.87907 1.91248 1.25869 1.27496 1.22689 0.97021 0.98597 0.82472 0.84069 0.92538 0.92463 0.85995 0.87036 0.90702 0.89717 0.87968 0.90977 0.90420 0.92081 0.88237 0.87396 0.92132 0.92592 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.97 16 2 O -0.37 -13.34 10.57 -51.42 -0.54 -13.88 16 3 C 0.45 19.89 7.99 71.24 0.57 20.46 16 4 O -0.53 -26.74 16.07 21.98 0.35 -26.39 16 5 C 0.11 4.95 4.05 85.63 0.35 5.30 16 6 N -0.45 -21.66 1.77 -639.61 -1.13 -22.79 16 7 C -0.36 -18.41 9.07 84.04 0.76 -17.65 16 8 H 0.08 4.46 7.09 -2.91 -0.02 4.44 16 9 C 0.04 1.77 5.08 84.93 0.43 2.20 16 10 N -0.87 -46.55 13.96 21.66 0.30 -46.25 16 11 Si 0.90 37.06 26.17 68.60 1.80 38.85 16 12 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 13 H -0.24 -9.15 5.57 99.48 0.55 -8.60 16 14 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 15 C 0.48 21.98 7.19 87.66 0.63 22.61 16 16 O -0.61 -29.51 13.66 -3.05 -0.04 -29.55 16 17 C -0.10 -3.96 3.83 29.85 0.11 -3.85 16 18 C -0.10 -3.30 2.03 -10.70 -0.02 -3.32 16 19 H 0.06 2.15 7.95 -2.39 -0.02 2.13 16 20 C -0.12 -2.93 5.31 30.71 0.16 -2.77 16 21 C -0.15 -3.19 6.14 30.68 0.19 -3.00 16 22 C 0.05 1.11 6.84 72.01 0.49 1.60 16 23 O -0.41 -13.02 10.77 -148.98 -1.60 -14.62 16 24 C 0.07 2.31 5.84 72.01 0.42 2.73 16 25 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 27 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 28 H 0.12 4.94 7.56 -2.39 -0.02 4.92 16 29 H 0.11 4.68 4.04 -2.39 -0.01 4.67 16 30 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.08 3.28 7.64 -2.39 -0.02 3.26 16 32 H 0.10 3.63 8.10 -2.39 -0.02 3.61 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 3.37 6.04 -2.38 -0.01 3.35 16 Total: -1.00 -66.00 324.78 5.31 -60.69 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.88 Total: 27.64 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 5.29 Total: 26.29 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.83 Total: -69.04 kcal Atomic # 8 Polarization: -82.60 SS G_CDS: -1.84 Total: -84.44 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 1.80 Total: 38.85 kcal Total: -66.00 5.31 -60.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193309477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.586 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds