Wall clock time and date at job start Tue Mar 31 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47202 * 2 1 4 4 N 1.46498 * 109.47365 * 120.00239 * 2 1 3 5 5 C 1.46506 * 119.99908 * 299.99852 * 4 2 1 6 6 C 1.50699 * 109.46888 * 89.99948 * 5 4 2 7 7 H 1.08002 * 120.00516 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99783 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99707 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99956 * 180.27458 * 8 6 5 11 11 H 1.48503 * 109.47407 * 269.72718 * 10 8 6 12 12 H 1.48505 * 109.47281 * 29.72474 * 10 8 6 13 13 H 1.48501 * 109.47274 * 149.72572 * 10 8 6 14 14 C 1.34777 * 120.00353 * 119.99636 * 4 2 1 15 15 O 1.21273 * 120.00313 * 180.02562 * 14 4 2 16 16 C 1.50701 * 119.99542 * 0.02562 * 14 4 2 17 17 H 1.09000 * 110.33332 * 305.79535 * 16 14 4 18 18 C 1.54481 * 110.37193 * 68.16706 * 16 14 4 19 19 C 1.54511 * 104.06392 * 142.80772 * 18 16 14 20 20 C 1.54476 * 104.06087 * 359.97438 * 19 18 16 21 21 H 1.09000 * 110.46724 * 94.90406 * 20 19 18 22 22 C 1.50704 * 110.37107 * 217.18883 * 20 19 18 23 23 O 1.20826 * 119.99439 * 111.83822 * 22 20 19 24 24 O 1.34225 * 119.99985 * 291.83255 * 22 20 19 25 25 O 1.44424 * 110.36916 * 183.54291 * 16 14 4 26 26 H 1.09004 * 109.47027 * 300.00126 * 1 2 3 27 27 H 1.08997 * 109.47197 * 60.00004 * 1 2 3 28 28 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46764 * 240.00346 * 2 1 3 30 30 H 1.09001 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47041 * 300.00092 * 3 2 1 32 32 H 1.08996 * 109.46667 * 60.00212 * 3 2 1 33 33 H 1.09001 * 109.46452 * 330.00207 * 5 4 2 34 34 H 1.08997 * 109.46855 * 210.00125 * 5 4 2 35 35 H 0.97005 * 119.99656 * 179.97438 * 9 8 6 36 36 H 1.09004 * 110.50993 * 261.45254 * 18 16 14 37 37 H 1.09000 * 110.51229 * 24.15862 * 18 16 14 38 38 H 1.08995 * 110.51201 * 241.35191 * 19 18 16 39 39 H 1.09005 * 110.62780 * 118.69806 * 19 18 16 40 40 H 0.96703 * 116.99620 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5268 6 6 0.3831 -0.8388 2.9830 7 1 -0.1179 -1.5522 2.3454 8 6 -0.1498 -0.5216 4.2145 9 7 0.4600 0.3475 4.9906 10 14 -1.7341 -1.3314 4.7833 11 1 -2.8929 -0.5082 4.3534 12 1 -1.8402 -2.6863 4.1846 13 1 -1.7288 -1.4436 6.2640 14 6 2.7932 -1.7865 1.0725 15 8 3.1971 -2.3585 2.0626 16 6 3.1576 -2.3010 -0.2963 17 1 2.2589 -2.4654 -0.8908 18 6 4.1030 -1.3090 -1.0096 19 6 5.0854 -2.2167 -1.7830 20 6 4.6178 -3.6497 -1.4451 21 1 3.9444 -4.0228 -2.2167 22 6 5.8040 -4.5674 -1.2970 23 8 6.0835 -5.0232 -0.2134 24 8 6.5497 -4.8785 -2.3687 25 8 3.9192 -3.5232 -0.1876 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.5296 0.8907 2.4843 34 1 2.4630 -0.4293 3.2291 35 1 0.0849 0.5710 5.8569 36 1 3.5435 -0.6768 -1.6991 37 1 4.6383 -0.7004 -0.2808 38 1 6.1065 -2.0569 -1.4367 39 1 5.0139 -2.0342 -2.8553 40 1 7.3006 -5.4705 -2.2242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222456874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:03 Heat of formation + Delta-G solvation = -164.688420 kcal Electronic energy + Delta-G solvation = -23722.910119 eV Core-core repulsion = 20117.238249 eV Total energy + Delta-G solvation = -3605.671871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.85214 -39.74630 -38.14246 -36.23990 -35.95098 -32.89566 -32.33337 -30.90824 -30.52508 -27.42644 -26.79938 -25.10417 -22.78724 -22.24399 -21.40732 -21.10673 -18.70761 -18.06245 -17.47774 -16.73763 -16.46246 -16.29343 -15.60908 -15.27026 -14.97895 -14.48853 -14.17085 -13.85029 -13.72956 -13.51531 -13.18582 -12.61541 -12.34302 -12.29091 -11.95419 -11.89020 -11.71094 -11.64112 -11.43724 -11.18793 -11.11055 -10.96042 -10.86509 -10.62142 -10.54254 -10.38078 -10.07520 -9.97933 -9.53333 -8.81920 -8.40209 -7.67915 -6.01789 -4.04952 2.00122 2.40539 3.27547 3.31712 3.39418 3.44472 3.56812 4.06264 4.29643 4.47481 4.56167 4.65396 4.83375 4.88939 5.06303 5.13849 5.24563 5.32985 5.37392 5.47506 5.53219 5.58214 5.65184 5.87242 5.95226 6.09918 6.19337 6.25666 6.33374 6.48430 6.56283 6.93591 7.10559 7.46934 7.55540 7.71305 7.95021 8.26241 8.38878 8.92334 9.08090 9.59111 11.06441 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.004571 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.447506 B = 6124.437646 C = 6817.677199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 C -0.163 4.163 4 N -0.589 5.589 5 C 0.248 3.752 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.274 1.274 13 H -0.286 1.286 14 C 0.510 3.490 15 O -0.515 6.515 16 C 0.055 3.945 17 H 0.096 0.904 18 C -0.144 4.144 19 C -0.137 4.137 20 C 0.081 3.919 21 H 0.110 0.890 22 C 0.481 3.519 23 O -0.484 6.484 24 O -0.516 6.516 25 O -0.315 6.315 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -1.269 -20.019 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 C -0.221 4.221 4 N -0.323 5.323 5 C 0.129 3.871 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.199 1.199 13 H -0.212 1.212 14 C 0.294 3.706 15 O -0.389 6.389 16 C -0.006 4.006 17 H 0.113 0.887 18 C -0.182 4.182 19 C -0.175 4.175 20 C 0.021 3.979 21 H 0.128 0.872 22 C 0.320 3.680 23 O -0.369 6.369 24 O -0.329 6.329 25 O -0.233 6.233 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 7.209 -1.502 -18.823 20.212 hybrid contribution -0.494 -0.738 0.322 0.945 sum 6.715 -2.240 -18.501 19.809 Atomic orbital electron populations 1.22159 0.94560 1.02486 1.02453 1.21117 0.95359 0.93251 0.87852 1.22176 1.00895 0.96366 1.02634 1.48264 1.48445 1.26678 1.08865 1.19272 0.96425 0.94543 0.76870 1.21439 1.07427 1.24865 1.02168 0.92314 1.24921 0.97667 0.95238 0.96295 1.69930 1.39365 1.33437 1.10707 0.86540 0.83294 0.79893 0.77967 1.20716 1.19905 1.21159 1.19721 0.80069 0.81589 0.89190 1.90734 1.53099 1.56300 1.38798 1.23087 0.95502 0.84906 0.97126 0.88686 1.23045 0.97103 0.98199 0.99817 1.22882 1.00948 0.91612 1.02053 1.22356 0.91031 0.94733 0.89776 0.87236 1.22918 0.83433 0.79843 0.81768 1.90806 1.68484 1.49752 1.27836 1.84459 1.43504 1.65196 1.39724 1.89424 1.61424 1.40478 1.31938 0.89907 0.93183 0.92680 0.90780 0.92838 0.92192 0.91140 0.94536 0.94013 0.92791 0.88744 0.89397 0.89949 0.88607 0.72740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.47 37.16 0.31 -2.15 16 2 C 0.13 1.94 2.75 -67.93 -0.19 1.75 16 3 C -0.16 -2.17 9.17 37.16 0.34 -1.83 16 4 N -0.59 -12.06 2.39 -167.47 -0.40 -12.46 16 5 C 0.25 6.32 4.60 -5.19 -0.02 6.29 16 6 C -0.52 -14.41 7.83 -34.44 -0.27 -14.68 16 7 H 0.06 1.63 7.63 -52.49 -0.40 1.23 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.90 21.92 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.51 10.94 6.97 -10.98 -0.08 10.86 16 15 O -0.51 -14.02 16.13 -13.63 -0.22 -14.24 16 16 C 0.05 0.85 2.73 -27.11 -0.07 0.78 16 17 H 0.10 1.22 7.51 -51.93 -0.39 0.83 16 18 C -0.14 -1.60 5.67 -25.16 -0.14 -1.74 16 19 C -0.14 -1.27 6.62 -25.16 -0.17 -1.43 16 20 C 0.08 0.95 3.82 -27.11 -0.10 0.85 16 21 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 22 C 0.48 6.05 7.57 36.01 0.27 6.32 16 23 O -0.48 -8.47 17.31 -25.28 -0.44 -8.91 16 24 O -0.52 -4.19 13.42 -39.24 -0.53 -4.72 16 25 O -0.31 -5.55 10.17 -64.22 -0.65 -6.21 16 26 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.88 4.19 -51.93 -0.22 0.66 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.11 6.66 -51.93 -0.35 0.76 16 33 H 0.04 0.93 6.43 -51.93 -0.33 0.60 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.09 0.76 6.86 -51.93 -0.36 0.40 16 37 H 0.09 1.11 7.86 -51.93 -0.41 0.70 16 38 H 0.08 0.78 7.86 -51.93 -0.41 0.37 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.41 1.66 9.10 45.56 0.41 2.07 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -37.83 330.86 -6.61 -44.44 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.86 Total: -0.73 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.21 Total: 6.65 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.34 Total: -38.17 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -1.84 Total: -34.07 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.83 -6.61 -44.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222456874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.250 kcal (2) G-P(sol) polarization free energy of solvation -37.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds