Wall clock time and date at job start Tue Mar 31 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47202 * 2 1 4 4 N 1.46498 * 109.47365 * 120.00239 * 2 1 3 5 5 C 1.46506 * 119.99908 * 299.99852 * 4 2 1 6 6 C 1.50699 * 109.46888 * 89.99948 * 5 4 2 7 7 H 1.08002 * 120.00516 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99783 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99707 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99956 * 180.27458 * 8 6 5 11 11 H 1.48503 * 109.47407 * 269.72718 * 10 8 6 12 12 H 1.48505 * 109.47281 * 29.72474 * 10 8 6 13 13 H 1.48501 * 109.47274 * 149.72572 * 10 8 6 14 14 C 1.34777 * 120.00353 * 119.99636 * 4 2 1 15 15 O 1.21273 * 120.00313 * 180.02562 * 14 4 2 16 16 C 1.50701 * 119.99542 * 0.02562 * 14 4 2 17 17 H 1.09000 * 110.33332 * 305.79535 * 16 14 4 18 18 C 1.54481 * 110.37193 * 68.16706 * 16 14 4 19 19 C 1.54511 * 104.06392 * 142.80772 * 18 16 14 20 20 C 1.54476 * 104.06087 * 359.97438 * 19 18 16 21 21 H 1.09000 * 110.46724 * 94.90406 * 20 19 18 22 22 C 1.50704 * 110.37107 * 217.18883 * 20 19 18 23 23 O 1.20826 * 119.99439 * 111.83822 * 22 20 19 24 24 O 1.34225 * 119.99985 * 291.83255 * 22 20 19 25 25 O 1.44424 * 110.36916 * 183.54291 * 16 14 4 26 26 H 1.09004 * 109.47027 * 300.00126 * 1 2 3 27 27 H 1.08997 * 109.47197 * 60.00004 * 1 2 3 28 28 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46764 * 240.00346 * 2 1 3 30 30 H 1.09001 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47041 * 300.00092 * 3 2 1 32 32 H 1.08996 * 109.46667 * 60.00212 * 3 2 1 33 33 H 1.09001 * 109.46452 * 330.00207 * 5 4 2 34 34 H 1.08997 * 109.46855 * 210.00125 * 5 4 2 35 35 H 0.97005 * 119.99656 * 179.97438 * 9 8 6 36 36 H 1.09004 * 110.50993 * 261.45254 * 18 16 14 37 37 H 1.09000 * 110.51229 * 24.15862 * 18 16 14 38 38 H 1.08995 * 110.51201 * 241.35191 * 19 18 16 39 39 H 1.09005 * 110.62780 * 118.69806 * 19 18 16 40 40 H 0.96703 * 116.99620 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5268 6 6 0.3831 -0.8388 2.9830 7 1 -0.1179 -1.5522 2.3454 8 6 -0.1498 -0.5216 4.2145 9 7 0.4600 0.3475 4.9906 10 14 -1.7341 -1.3314 4.7833 11 1 -2.8929 -0.5082 4.3534 12 1 -1.8402 -2.6863 4.1846 13 1 -1.7288 -1.4436 6.2640 14 6 2.7932 -1.7865 1.0725 15 8 3.1971 -2.3585 2.0626 16 6 3.1576 -2.3010 -0.2963 17 1 2.2589 -2.4654 -0.8908 18 6 4.1030 -1.3090 -1.0096 19 6 5.0854 -2.2167 -1.7830 20 6 4.6178 -3.6497 -1.4451 21 1 3.9444 -4.0228 -2.2167 22 6 5.8040 -4.5674 -1.2970 23 8 6.0835 -5.0232 -0.2134 24 8 6.5497 -4.8785 -2.3687 25 8 3.9192 -3.5232 -0.1876 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.5296 0.8907 2.4843 34 1 2.4630 -0.4293 3.2291 35 1 0.0849 0.5710 5.8569 36 1 3.5435 -0.6768 -1.6991 37 1 4.6383 -0.7004 -0.2808 38 1 6.1065 -2.0569 -1.4367 39 1 5.0139 -2.0342 -2.8553 40 1 7.3006 -5.4705 -2.2242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222456874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:02 Heat of formation + Delta-G solvation = -193.454558 kcal Electronic energy + Delta-G solvation = -23724.157513 eV Core-core repulsion = 20117.238249 eV Total energy + Delta-G solvation = -3606.919264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = -0.05 seconds Orbital eigenvalues (eV) -41.91652 -41.00986 -39.42453 -37.57647 -37.14551 -34.96938 -33.32454 -32.42987 -31.75076 -29.23854 -27.96721 -26.44237 -24.56204 -23.34124 -22.45744 -22.20538 -20.01978 -19.14824 -18.69931 -18.53068 -17.70945 -17.53321 -17.05090 -16.55811 -16.32731 -16.09251 -15.47169 -15.10836 -14.90505 -14.78172 -14.41144 -14.27273 -13.90499 -13.44149 -13.33711 -13.11272 -12.83058 -12.78586 -12.78007 -12.71427 -12.57210 -12.49842 -12.19852 -12.10098 -11.95598 -11.66460 -11.58066 -11.42706 -11.12257 -10.60998 -10.47035 -9.45725 -8.20178 -6.31788 1.06800 1.34463 1.38513 1.46865 1.51503 1.74898 2.19607 2.40222 2.99737 3.09985 3.32831 3.61600 3.73703 3.91350 3.98841 4.00427 4.15857 4.32880 4.36269 4.44804 4.53812 4.82557 4.85450 4.92922 4.94044 5.01194 5.02933 5.09943 5.15101 5.23015 5.46819 5.48927 5.59379 5.61827 5.67426 5.89259 6.10451 6.72693 6.79433 6.92540 7.30058 7.46479 8.87367 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.004571 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.447506 B = 6124.437646 C = 6817.677199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.119 3.881 3 C -0.158 4.158 4 N -0.588 5.588 5 C 0.265 3.735 6 C -0.527 4.527 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.285 1.285 14 C 0.494 3.506 15 O -0.594 6.594 16 C 0.062 3.938 17 H 0.133 0.867 18 C -0.138 4.138 19 C -0.124 4.124 20 C 0.069 3.931 21 H 0.153 0.847 22 C 0.487 3.513 23 O -0.549 6.549 24 O -0.494 6.494 25 O -0.369 6.369 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.042 0.958 29 H 0.122 0.878 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.033 0.967 34 H -0.014 1.014 35 H 0.265 0.735 36 H 0.142 0.858 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 -0.835 -24.642 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.018 3.982 3 C -0.216 4.216 4 N -0.320 5.320 5 C 0.143 3.857 6 C -0.566 4.566 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.210 1.210 14 C 0.282 3.718 15 O -0.474 6.474 16 C 0.002 3.998 17 H 0.150 0.850 18 C -0.176 4.176 19 C -0.162 4.162 20 C 0.011 3.989 21 H 0.170 0.830 22 C 0.330 3.670 23 O -0.439 6.439 24 O -0.308 6.308 25 O -0.288 6.288 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.140 0.860 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.004 0.996 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.165 0.835 40 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 6.399 -1.035 -23.549 24.425 hybrid contribution -0.163 -0.884 1.681 1.906 sum 6.236 -1.919 -21.868 22.821 Atomic orbital electron populations 1.22121 0.94708 1.01780 1.02712 1.21631 0.95294 0.94422 0.86887 1.22156 1.01418 0.94942 1.03062 1.48284 1.48057 1.26877 1.08765 1.18669 0.93765 0.94178 0.79047 1.21671 1.07958 1.24555 1.02417 0.92768 1.25805 1.01159 0.95820 0.96464 1.70055 1.41057 1.34809 1.11122 0.85505 0.79758 0.78826 0.77274 1.18497 1.20108 1.21030 1.21005 0.78713 0.80766 0.91316 1.90683 1.55984 1.58662 1.42066 1.23138 0.97921 0.85747 0.93042 0.85002 1.23132 0.96901 0.97702 0.99844 1.22945 0.99708 0.88859 1.04648 1.22866 0.91175 0.96429 0.88423 0.83009 1.23265 0.83513 0.78877 0.81389 1.90796 1.70280 1.52407 1.30378 1.84413 1.43773 1.65156 1.37432 1.89383 1.62536 1.41282 1.35594 0.93938 0.88559 0.93848 0.86002 0.92060 0.87807 0.94576 0.94914 0.99588 0.92622 0.84051 0.91697 0.90766 0.83457 0.70515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 8.47 71.98 0.61 -3.87 16 2 C 0.12 3.31 2.75 44.99 0.12 3.43 16 3 C -0.16 -3.79 9.17 71.98 0.66 -3.13 16 4 N -0.59 -24.60 2.39 -802.13 -1.91 -26.51 16 5 C 0.26 14.37 4.60 85.63 0.39 14.76 16 6 C -0.53 -30.54 7.83 25.60 0.20 -30.34 16 7 H 0.05 3.11 7.63 -2.91 -0.02 3.09 16 8 C 0.01 0.35 5.46 84.66 0.46 0.81 16 9 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 10 Si 0.96 46.00 29.54 68.60 2.03 48.02 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 14 C 0.49 21.87 6.97 87.66 0.61 22.48 16 15 O -0.59 -34.82 16.13 15.34 0.25 -34.57 16 16 C 0.06 1.80 2.73 30.35 0.08 1.88 16 17 H 0.13 2.82 7.51 -2.39 -0.02 2.81 16 18 C -0.14 -2.54 5.67 31.61 0.18 -2.36 16 19 C -0.12 -1.72 6.62 31.61 0.21 -1.51 16 20 C 0.07 1.43 3.82 30.35 0.12 1.55 16 21 H 0.15 1.82 8.14 -2.39 -0.02 1.81 16 22 C 0.49 11.55 7.57 71.24 0.54 12.09 16 23 O -0.55 -19.73 17.31 28.20 0.49 -19.24 16 24 O -0.49 -6.54 13.42 -51.36 -0.69 -7.23 16 25 O -0.37 -12.85 10.17 -121.26 -1.23 -14.09 16 26 H 0.04 1.57 6.92 -2.38 -0.02 1.55 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.12 2.23 4.19 -2.39 -0.01 2.22 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.11 6.66 -2.39 -0.02 1.10 16 33 H 0.03 1.78 6.43 -2.39 -0.02 1.77 16 34 H -0.01 -0.91 7.42 -2.39 -0.02 -0.93 16 35 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 36 H 0.14 1.25 6.86 -2.38 -0.02 1.23 16 37 H 0.06 1.52 7.86 -2.39 -0.02 1.50 16 38 H 0.07 1.18 7.86 -2.39 -0.02 1.16 16 39 H 0.15 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.43 2.39 9.10 -74.05 -0.67 1.72 16 Total: -1.00 -94.35 330.86 3.79 -90.56 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 0.39 Total: 4.27 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 4.19 Total: 15.79 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.63 Total: -83.53 kcal Atomic # 8 Polarization: -73.94 SS G_CDS: -1.19 Total: -75.13 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -94.35 3.79 -90.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222456874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.893 kcal (2) G-P(sol) polarization free energy of solvation -94.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.05 seconds