Wall clock time and date at job start Tue Mar 31 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99899 * 2 1 4 4 C 1.50703 * 109.47102 * 269.99947 * 3 2 1 5 5 H 1.07997 * 119.99880 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00181 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99747 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00242 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47280 * 59.99925 * 8 6 4 10 10 H 1.48496 * 109.47257 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47164 * 300.00044 * 8 6 4 12 12 C 1.39364 * 120.00357 * 179.97438 * 2 1 3 13 13 C 1.39122 * 119.91531 * 359.97438 * 12 2 1 14 14 C 1.37708 * 120.08090 * 180.02562 * 13 12 2 15 15 C 1.39813 * 119.91587 * 359.97438 * 14 13 12 16 16 C 1.47332 * 120.07797 * 180.02562 * 15 14 13 17 17 N 1.29824 * 119.99787 * 180.02562 * 16 15 14 18 18 N 1.40100 * 120.00299 * 179.97438 * 17 16 15 19 19 C 1.36322 * 127.09866 * 314.68231 * 18 17 16 20 20 N 1.30611 * 107.20284 * 179.83642 * 19 18 17 21 21 N 1.28537 * 109.89487 * 0.43827 * 20 19 18 22 22 C 1.30604 * 109.90175 * 359.72169 * 21 20 19 23 23 C 1.39808 * 119.83735 * 0.26958 * 15 14 13 24 24 C 1.37705 * 119.91815 * 359.47565 * 23 15 14 25 25 H 1.08994 * 109.47666 * 270.00071 * 1 2 3 26 26 H 1.09001 * 109.47332 * 30.00547 * 1 2 3 27 27 H 1.09003 * 109.47065 * 150.00088 * 1 2 3 28 28 H 1.09004 * 109.47071 * 29.99771 * 3 2 1 29 29 H 1.08995 * 109.47164 * 149.99635 * 3 2 1 30 30 H 0.97005 * 119.99971 * 179.97438 * 7 6 4 31 31 H 1.07999 * 119.96438 * 359.97438 * 13 12 2 32 32 H 1.07992 * 120.04118 * 179.97438 * 14 13 12 33 33 H 1.07999 * 120.00277 * 359.97438 * 16 15 14 34 34 H 1.08001 * 126.39861 * 359.97438 * 19 18 17 35 35 H 1.07996 * 126.40130 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.04043 * 179.72431 * 23 15 14 37 37 H 1.07999 * 119.95875 * 180.22762 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5532 3.6181 -0.6732 8 14 3.4379 3.4169 -3.4340 9 1 2.1406 3.5936 -4.1348 10 1 4.1802 4.7030 -3.4340 11 1 4.2413 2.3821 -4.1333 12 6 2.1619 -1.2069 0.0005 13 6 1.4645 -2.4107 0.0016 14 6 2.1497 -3.6053 0.0027 15 6 3.5478 -3.6072 0.0021 16 6 4.2845 -4.8831 0.0027 17 7 5.5827 -4.8830 0.0027 18 7 6.2833 -6.0963 0.0038 19 6 6.0324 -7.1900 0.7779 20 7 6.9151 -8.0988 0.4601 21 7 7.7021 -7.6451 -0.4492 22 6 7.3602 -6.4248 -0.7647 23 6 4.2451 -2.3954 0.0062 24 6 3.5531 -1.2048 -0.0002 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5139 30 1 4.0300 4.4441 -0.8504 31 1 0.3846 -2.4085 0.0025 32 1 1.6078 -4.5394 0.0039 33 1 3.7445 -5.8184 0.0040 34 1 5.2487 -7.2877 1.5145 35 1 7.8411 -5.7935 -1.4972 36 1 5.3251 -2.3930 0.0103 37 1 4.0911 -0.2683 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254397762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:59 Heat of formation + Delta-G solvation = 161.312783 kcal Electronic energy + Delta-G solvation = -20650.363090 eV Core-core repulsion = 17430.722115 eV Total energy + Delta-G solvation = -3219.640976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.97552 -39.39304 -37.23895 -35.72466 -33.01637 -32.23795 -30.91958 -30.68061 -29.28290 -28.05459 -25.83308 -24.21674 -22.88363 -22.33090 -22.07245 -21.13251 -19.82252 -18.19774 -17.09794 -16.69588 -16.15558 -15.71439 -15.29957 -15.09869 -14.75416 -14.44905 -14.15934 -14.03570 -13.31089 -13.14033 -13.02038 -12.36442 -12.30181 -12.02692 -11.76472 -11.65631 -11.47039 -11.15648 -10.99932 -10.87096 -10.56994 -10.47754 -10.22018 -10.00839 -9.83959 -9.57194 -9.03741 -8.73106 -8.66007 -6.81349 -6.23349 -4.36131 0.65496 1.73120 1.77781 1.90450 2.46390 2.73335 3.17665 3.23487 3.25521 3.76469 4.09643 4.18167 4.26580 4.35813 4.39771 4.97592 5.05022 5.07529 5.16142 5.22641 5.44422 5.49796 5.66587 5.72364 5.78207 5.89384 5.95265 6.09254 6.13379 6.23868 6.55858 6.62767 6.74870 6.89342 7.07931 7.15590 7.59378 7.60883 7.86732 7.94447 8.07123 8.53798 8.70879 9.31781 10.78729 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.020139 B = 0.003262 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.037198 B = 8580.611308 C = 9580.268226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.596 5.596 3 C 0.242 3.758 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.275 3.725 13 C -0.231 4.231 14 C -0.019 4.019 15 C -0.186 4.186 16 C 0.218 3.782 17 N -0.299 5.299 18 N -0.339 5.339 19 C 0.122 3.878 20 N -0.293 5.293 21 N -0.301 5.301 22 C 0.184 3.816 23 C -0.011 4.011 24 C -0.200 4.200 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.267 0.733 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.215 0.785 35 H 0.221 0.779 36 H 0.127 0.873 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 -12.387 2.323 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.296 5.296 3 C 0.123 3.877 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.161 3.839 13 C -0.254 4.254 14 C -0.041 4.041 15 C -0.193 4.193 16 C 0.015 3.985 17 N -0.104 5.104 18 N -0.115 5.115 19 C -0.166 4.166 20 N -0.133 5.133 21 N -0.142 5.142 22 C -0.104 4.104 23 C -0.032 4.032 24 C -0.223 4.223 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.231 0.769 35 H 0.237 0.763 36 H 0.145 0.855 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.415 -12.813 2.369 13.252 hybrid contribution -1.192 1.176 -0.914 1.907 sum -3.607 -11.637 1.455 12.270 Atomic orbital electron populations 1.21643 0.80762 1.02625 1.00428 1.47400 1.05150 1.05073 1.72014 1.19468 0.92306 0.78357 0.97556 1.21446 1.37361 1.06818 0.92191 0.92146 1.24954 0.95124 0.96138 0.97636 1.69908 1.37740 1.14362 1.30989 0.86541 0.78537 0.78021 0.84314 1.20151 1.21056 1.19969 1.18266 0.91713 0.86190 0.87697 1.20528 0.99607 0.90920 1.14362 1.20780 0.91997 0.97432 0.93869 1.17823 0.92396 0.89673 1.19378 1.25129 0.90764 0.98618 0.83963 1.75895 1.09481 0.99723 1.25277 1.47950 1.23913 1.10327 1.29263 1.26942 1.03974 0.84288 1.01403 1.74194 1.04022 1.24370 1.10746 1.74321 1.21417 1.07123 1.11329 1.26624 0.89435 0.95507 0.98810 1.21078 0.99670 0.90666 0.91823 1.20933 0.92480 0.99242 1.09604 0.93756 0.90803 0.92129 0.94644 0.94165 0.92332 0.85792 0.86177 0.86289 0.76894 0.76255 0.85503 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 10.18 59.84 0.61 1.90 16 2 N -0.60 -10.90 2.98 -180.96 -0.54 -11.44 16 3 C 0.24 5.44 4.90 -5.19 -0.03 5.41 16 4 C -0.54 -13.51 9.39 -34.44 -0.32 -13.83 16 5 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 6 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 7 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 C 0.27 4.61 6.55 -83.78 -0.55 4.06 16 13 C -0.23 -3.09 9.18 -39.45 -0.36 -3.45 16 14 C -0.02 -0.22 9.78 -39.19 -0.38 -0.60 16 15 C -0.19 -2.31 5.87 -105.02 -0.62 -2.92 16 16 C 0.22 2.31 10.44 -14.70 -0.15 2.16 16 17 N -0.30 -3.71 10.74 32.13 0.35 -3.37 16 18 N -0.34 -4.23 3.67 -14.74 -0.05 -4.28 16 19 C 0.12 1.44 12.41 -89.10 -1.11 0.34 16 20 N -0.29 -4.30 12.20 29.87 0.36 -3.93 16 21 N -0.30 -4.48 12.20 29.86 0.36 -4.11 16 22 C 0.18 2.29 13.05 -89.11 -1.16 1.13 16 23 C -0.01 -0.16 9.57 -39.19 -0.37 -0.54 16 24 C -0.20 -3.44 9.18 -39.45 -0.36 -3.80 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 27 H 0.06 0.74 6.18 -51.93 -0.32 0.41 16 28 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.04 0.96 6.18 -51.93 -0.32 0.63 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 31 H 0.12 1.42 6.12 -52.49 -0.32 1.10 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.91 7.88 -52.49 -0.41 0.50 16 34 H 0.21 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.22 1.99 8.06 -52.49 -0.42 1.56 16 36 H 0.13 1.80 7.55 -52.49 -0.40 1.40 16 37 H 0.14 2.73 6.12 -52.49 -0.32 2.41 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -29.76 326.50 -7.96 -37.72 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.17 Total: 1.34 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -4.91 Total: -8.58 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 1.22 Total: -50.47 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.76 -7.96 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254397762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.029 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds