Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99899 * 2 1 4 4 C 1.50703 * 109.47102 * 269.99947 * 3 2 1 5 5 H 1.07997 * 119.99880 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00181 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99747 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00242 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47280 * 59.99925 * 8 6 4 10 10 H 1.48496 * 109.47257 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47164 * 300.00044 * 8 6 4 12 12 C 1.39364 * 120.00357 * 179.97438 * 2 1 3 13 13 C 1.39122 * 119.91531 * 359.97438 * 12 2 1 14 14 C 1.37708 * 120.08090 * 180.02562 * 13 12 2 15 15 C 1.39813 * 119.91587 * 359.97438 * 14 13 12 16 16 C 1.47332 * 120.07797 * 180.02562 * 15 14 13 17 17 N 1.29824 * 119.99787 * 180.02562 * 16 15 14 18 18 N 1.40100 * 120.00299 * 179.97438 * 17 16 15 19 19 C 1.36322 * 127.09866 * 314.68231 * 18 17 16 20 20 N 1.30611 * 107.20284 * 179.83642 * 19 18 17 21 21 N 1.28537 * 109.89487 * 0.43827 * 20 19 18 22 22 C 1.30604 * 109.90175 * 359.72169 * 21 20 19 23 23 C 1.39808 * 119.83735 * 0.26958 * 15 14 13 24 24 C 1.37705 * 119.91815 * 359.47565 * 23 15 14 25 25 H 1.08994 * 109.47666 * 270.00071 * 1 2 3 26 26 H 1.09001 * 109.47332 * 30.00547 * 1 2 3 27 27 H 1.09003 * 109.47065 * 150.00088 * 1 2 3 28 28 H 1.09004 * 109.47071 * 29.99771 * 3 2 1 29 29 H 1.08995 * 109.47164 * 149.99635 * 3 2 1 30 30 H 0.97005 * 119.99971 * 179.97438 * 7 6 4 31 31 H 1.07999 * 119.96438 * 359.97438 * 13 12 2 32 32 H 1.07992 * 120.04118 * 179.97438 * 14 13 12 33 33 H 1.07999 * 120.00277 * 359.97438 * 16 15 14 34 34 H 1.08001 * 126.39861 * 359.97438 * 19 18 17 35 35 H 1.07996 * 126.40130 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.04043 * 179.72431 * 23 15 14 37 37 H 1.07999 * 119.95875 * 180.22762 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5532 3.6181 -0.6732 8 14 3.4379 3.4169 -3.4340 9 1 2.1406 3.5936 -4.1348 10 1 4.1802 4.7030 -3.4340 11 1 4.2413 2.3821 -4.1333 12 6 2.1619 -1.2069 0.0005 13 6 1.4645 -2.4107 0.0016 14 6 2.1497 -3.6053 0.0027 15 6 3.5478 -3.6072 0.0021 16 6 4.2845 -4.8831 0.0027 17 7 5.5827 -4.8830 0.0027 18 7 6.2833 -6.0963 0.0038 19 6 6.0324 -7.1900 0.7779 20 7 6.9151 -8.0988 0.4601 21 7 7.7021 -7.6451 -0.4492 22 6 7.3602 -6.4248 -0.7647 23 6 4.2451 -2.3954 0.0062 24 6 3.5531 -1.2048 -0.0002 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5139 30 1 4.0300 4.4441 -0.8504 31 1 0.3846 -2.4085 0.0025 32 1 1.6078 -4.5394 0.0039 33 1 3.7445 -5.8184 0.0040 34 1 5.2487 -7.2877 1.5145 35 1 7.8411 -5.7935 -1.4972 36 1 5.3251 -2.3930 0.0103 37 1 4.0911 -0.2683 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254397762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = 146.916628 kcal Electronic energy + Delta-G solvation = -20650.987355 eV Core-core repulsion = 17430.722115 eV Total energy + Delta-G solvation = -3220.265240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.92811 -40.53867 -38.29980 -36.92855 -34.82407 -33.31652 -32.06355 -31.64333 -30.50079 -29.55602 -27.10984 -25.56367 -24.15462 -23.37115 -23.11835 -22.27163 -20.92259 -19.09917 -18.65161 -18.25618 -17.19748 -16.92339 -16.50947 -16.20634 -15.97501 -15.63997 -15.39384 -15.23048 -14.53331 -14.34611 -14.18406 -13.90548 -13.34915 -13.22082 -13.08047 -13.05026 -12.80972 -12.66425 -12.55449 -12.19118 -12.01999 -11.78582 -11.53156 -11.43121 -10.92070 -10.65069 -10.54909 -10.27889 -9.81561 -8.39429 -7.90976 -6.39384 -0.28397 0.67213 0.79720 0.97808 1.38168 1.39641 1.46584 1.48923 1.76167 2.31854 2.53001 3.05471 3.07838 3.25452 3.57580 3.60913 4.02488 4.14407 4.18628 4.25723 4.40164 4.51529 4.60598 4.64914 4.69866 4.80459 4.96120 4.99278 5.01165 5.12475 5.21209 5.25262 5.49574 5.55625 5.65019 5.69664 6.00511 6.03178 6.39292 6.71182 6.76688 6.80882 7.32471 7.58085 8.81037 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.020139 B = 0.003262 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.037198 B = 8580.611308 C = 9580.268226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.616 5.616 3 C 0.260 3.740 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.926 5.926 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.247 3.753 13 C -0.224 4.224 14 C -0.001 4.001 15 C -0.175 4.175 16 C 0.230 3.770 17 N -0.318 5.318 18 N -0.344 5.344 19 C 0.135 3.865 20 N -0.330 5.330 21 N -0.335 5.335 22 C 0.184 3.816 23 C -0.018 4.018 24 C -0.230 4.230 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.267 0.733 31 H 0.150 0.850 32 H 0.173 0.827 33 H 0.164 0.836 34 H 0.253 0.747 35 H 0.245 0.755 36 H 0.123 0.877 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.687 -15.162 1.792 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.319 5.319 3 C 0.138 3.862 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.565 5.565 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.138 3.862 13 C -0.247 4.247 14 C -0.022 4.022 15 C -0.181 4.181 16 C 0.027 3.973 17 N -0.122 5.122 18 N -0.119 5.119 19 C -0.154 4.154 20 N -0.170 5.170 21 N -0.174 5.174 22 C -0.105 4.105 23 C -0.039 4.039 24 C -0.253 4.253 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.168 0.832 32 H 0.191 0.809 33 H 0.181 0.819 34 H 0.269 0.731 35 H 0.261 0.739 36 H 0.141 0.859 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.099 -15.643 1.837 16.275 hybrid contribution -0.612 1.877 -0.696 2.093 sum -4.711 -13.766 1.141 14.595 Atomic orbital electron populations 1.21777 0.78595 1.03262 1.01698 1.47169 1.06333 1.04023 1.74420 1.18894 0.91389 0.80253 0.95637 1.21723 1.36603 1.06541 0.93282 0.92837 1.25739 0.95115 0.96411 1.01237 1.70019 1.38829 1.14821 1.32848 0.85600 0.78598 0.77506 0.79966 1.19248 1.20766 1.19843 1.18541 0.91542 0.86911 0.89252 1.20851 1.00919 0.89942 1.12988 1.21281 0.91362 0.98694 0.90888 1.18027 0.93284 0.89358 1.17459 1.25262 0.90435 0.99172 0.82441 1.75902 1.10838 0.99927 1.25582 1.48016 1.24000 1.10435 1.29483 1.27657 1.03620 0.83188 1.00900 1.74125 1.05285 1.25885 1.11706 1.74258 1.22469 1.08418 1.12299 1.27123 0.89311 0.95159 0.98858 1.21098 0.99641 0.91079 0.92045 1.20740 0.93325 0.98650 1.12565 0.92121 0.92355 0.89248 0.96805 0.96669 0.92383 0.83208 0.80921 0.81911 0.73104 0.73921 0.85935 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.50 10.18 127.77 1.30 3.80 16 2 N -0.62 -23.06 2.98 -726.44 -2.17 -25.22 16 3 C 0.26 12.42 4.90 85.63 0.42 12.84 16 4 C -0.54 -28.34 9.39 25.60 0.24 -28.10 16 5 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 6 C 0.01 0.78 5.46 84.65 0.46 1.24 16 7 N -0.93 -52.11 13.29 21.45 0.28 -51.83 16 8 Si 0.96 42.03 29.54 68.60 2.03 44.05 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 C 0.25 8.26 6.55 38.37 0.25 8.51 16 13 C -0.22 -5.23 9.18 22.36 0.21 -5.02 16 14 C 0.00 -0.03 9.78 22.53 0.22 0.20 16 15 C -0.18 -3.71 5.87 -20.12 -0.12 -3.83 16 16 C 0.23 3.79 10.44 87.38 0.91 4.70 16 17 N -0.32 -6.88 10.74 -52.25 -0.56 -7.44 16 18 N -0.34 -7.58 3.67 -200.54 -0.74 -8.32 16 19 C 0.14 2.76 12.41 179.82 2.23 4.99 16 20 N -0.33 -9.14 12.20 -59.43 -0.73 -9.86 16 21 N -0.33 -9.58 12.20 -59.44 -0.73 -10.30 16 22 C 0.18 4.26 13.05 179.82 2.35 6.60 16 23 C -0.02 -0.51 9.57 22.52 0.22 -0.30 16 24 C -0.23 -8.27 9.18 22.36 0.21 -8.06 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.78 8.07 -2.39 -0.02 1.76 16 27 H 0.09 1.93 6.18 -2.39 -0.01 1.92 16 28 H 0.01 0.71 8.07 -2.38 -0.02 0.69 16 29 H 0.02 0.80 6.18 -2.39 -0.01 0.78 16 30 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 31 H 0.15 2.70 6.12 -2.91 -0.02 2.68 16 32 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.16 1.35 7.88 -2.91 -0.02 1.33 16 34 H 0.25 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.24 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.12 3.54 7.55 -2.91 -0.02 3.52 16 37 H 0.10 4.31 6.12 -2.91 -0.02 4.29 16 Total: -1.00 -69.23 326.50 7.38 -61.85 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.09 Total: 9.50 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 8.89 Total: -2.43 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -4.63 Total: -112.97 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.23 7.38 -61.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254397762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.770 kcal (2) G-P(sol) polarization free energy of solvation -69.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds