Wall clock time and date at job start Tue Mar 31 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99767 * 2 1 4 4 H 1.48502 * 109.47375 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46849 * 239.99931 * 3 2 1 6 6 H 1.48499 * 109.46913 * 120.00346 * 3 2 1 7 7 C 1.37877 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99489 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47279 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47242 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99967 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00386 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00272 * 180.02562 * 12 11 10 15 15 H 1.08997 * 115.55875 * 61.57445 * 14 12 11 16 16 C 1.53130 * 117.52041 * 207.39933 * 14 12 11 17 17 C 1.52376 * 59.85099 * 107.44005 * 16 14 12 18 18 C 1.53776 * 121.20286 * 249.48515 * 17 16 14 19 19 C 1.54482 * 102.20510 * 189.98729 * 18 17 16 20 20 C 1.51423 * 105.23467 * 25.73210 * 19 18 17 21 21 C 1.38461 * 130.36502 * 163.17120 * 20 19 18 22 22 C 1.38092 * 120.26975 * 179.97438 * 21 20 19 23 23 C 1.38259 * 119.90997 * 0.02562 * 22 21 20 24 24 C 1.38081 * 119.94090 * 0.02562 * 23 22 21 25 25 C 1.38386 * 109.79695 * 343.14172 * 20 19 18 26 26 H 0.97004 * 119.99762 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47787 * 300.00747 * 9 7 2 28 28 H 1.09005 * 109.46754 * 60.01352 * 9 7 2 29 29 H 1.08997 * 109.47583 * 300.00601 * 10 9 7 30 30 H 1.09006 * 109.47073 * 60.00418 * 10 9 7 31 31 H 0.96992 * 120.00544 * 0.02562 * 11 10 9 32 32 H 1.08996 * 117.51688 * 214.88803 * 16 14 12 33 33 H 1.08999 * 117.50947 * 359.97438 * 16 14 12 34 34 H 1.09002 * 110.85779 * 308.16595 * 18 17 16 35 35 H 1.09007 * 110.85903 * 71.60324 * 18 17 16 36 36 H 1.09004 * 110.28802 * 144.67268 * 19 18 17 37 37 H 1.08994 * 110.29280 * 266.79115 * 19 18 17 38 38 H 1.08006 * 119.86543 * 359.92050 * 21 20 19 39 39 H 1.08003 * 120.04521 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.02782 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.86137 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0018 13 8 3.3995 -6.0980 -0.0014 14 6 1.4333 -7.4031 -0.0030 15 1 0.7931 -7.5757 -0.8681 16 6 2.1235 -8.6191 0.6213 17 6 0.9618 -7.9452 1.3411 18 6 1.1819 -7.1517 2.6398 19 6 -0.2654 -6.8969 3.1161 20 6 -1.0848 -8.0213 2.5184 21 6 -2.3498 -8.4803 2.8442 22 6 -2.9067 -9.5370 2.1513 23 6 -2.1988 -10.1402 1.1283 24 6 -0.9366 -9.6852 0.8020 25 6 -0.3761 -8.6244 1.4941 26 1 -0.4850 -0.8401 0.0004 27 1 0.6246 -2.5571 0.8895 28 1 0.6242 -2.5567 -0.8905 29 1 2.8720 -3.6043 -0.8904 30 1 2.8719 -3.6043 0.8895 31 1 0.5429 -4.9309 -0.0019 32 1 1.9378 -9.5921 0.1665 33 1 3.1227 -8.4749 1.0324 34 1 1.7316 -7.7462 3.3695 35 1 1.6984 -6.2131 2.4383 36 1 -0.3163 -6.9292 4.2044 37 1 -0.6203 -5.9340 2.7487 38 1 -2.9029 -8.0105 3.6441 39 1 -3.8939 -9.8918 2.4081 40 1 -2.6327 -10.9665 0.5848 41 1 -0.3850 -10.1571 0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273070882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:17 Heat of formation + Delta-G solvation = -6.731501 kcal Electronic energy + Delta-G solvation = -21678.288903 eV Core-core repulsion = 18522.608573 eV Total energy + Delta-G solvation = -3155.680330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90378 -39.20269 -36.89636 -35.05809 -33.92704 -33.06764 -30.87453 -29.48433 -29.04649 -25.56998 -24.72643 -23.22726 -22.88492 -21.26225 -21.20133 -20.27502 -19.29615 -17.08652 -16.74578 -16.44545 -15.53481 -15.44603 -15.31418 -15.09203 -14.55970 -14.18669 -13.81421 -13.69666 -13.32694 -13.04703 -12.79792 -12.43903 -12.30444 -12.12072 -11.94422 -11.67758 -11.66801 -11.27699 -10.99343 -10.97563 -10.54907 -10.45345 -10.43134 -10.19807 -9.98838 -9.64833 -8.97727 -8.70540 -8.61442 -8.53420 -8.38244 -6.45332 -4.15495 1.09574 1.19818 2.79271 3.36789 3.42405 3.43665 3.50719 3.62456 3.88533 4.22984 4.29768 4.44447 4.50651 4.72126 4.78255 4.82565 4.88557 5.11615 5.18005 5.30690 5.31825 5.32839 5.42885 5.51032 5.62407 5.72077 5.81438 5.85828 5.91605 5.98603 6.03628 6.16840 6.19510 6.28055 6.31194 6.49665 6.57654 6.78529 6.79630 7.22531 7.32661 7.90715 8.07177 8.36396 8.55811 8.78340 9.56462 10.95633 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.003526 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.783682 B = 7938.139968 C = 8719.224489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 1.071 2.929 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.053 0.947 9 C 0.000 4.000 10 C 0.129 3.871 11 N -0.718 5.718 12 C 0.538 3.462 13 O -0.546 6.546 14 C -0.164 4.164 15 H 0.127 0.873 16 C -0.130 4.130 17 C -0.071 4.071 18 C -0.089 4.089 19 C -0.082 4.082 20 C -0.085 4.085 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.104 4.104 25 C -0.061 4.061 26 H 0.268 0.732 27 H 0.013 0.987 28 H 0.013 0.987 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.398 0.602 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 -20.927 4.619 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.186 4.186 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.642 4.642 8 H 0.071 0.929 9 C -0.037 4.037 10 C 0.007 3.993 11 N -0.367 5.367 12 C 0.323 3.677 13 O -0.424 6.424 14 C -0.185 4.185 15 H 0.145 0.855 16 C -0.167 4.167 17 C -0.071 4.071 18 C -0.126 4.126 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.122 4.122 25 C -0.061 4.061 26 H 0.078 0.922 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.231 0.769 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.093 -19.233 4.622 20.200 hybrid contribution -0.433 -1.736 -0.194 1.800 sum -4.526 -20.969 4.428 21.904 Atomic orbital electron populations 1.70807 1.06877 1.30539 1.46294 1.25881 0.96487 1.02799 0.93472 0.83513 0.74876 0.75078 0.76685 1.20710 1.21311 1.21310 1.21882 0.94522 0.91389 1.56372 0.92895 1.19442 0.94828 0.92880 0.96560 1.21578 0.95706 0.81054 1.01010 1.46314 1.10528 1.06376 1.73531 1.19492 0.87467 0.84401 0.76384 1.90680 1.13786 1.87603 1.50304 1.22377 1.04013 0.94391 0.97742 0.85489 1.22934 0.97194 0.95289 1.01263 1.20346 0.92869 1.01005 0.92906 1.21869 0.96594 0.99991 0.94150 1.21084 0.93315 0.96843 1.00641 1.20616 0.94322 0.96860 0.96664 1.20633 0.94441 0.97212 1.00405 1.21048 0.99838 0.96452 0.96333 1.20998 0.94584 1.00397 0.98126 1.20598 0.95531 0.96335 0.99716 1.19672 0.94181 0.95687 0.96518 0.92175 0.96847 0.96875 0.92387 0.92377 0.76908 0.87848 0.87158 0.90124 0.90017 0.90340 0.89541 0.86116 0.85911 0.85924 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.26 13.65 55.43 0.76 -26.50 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 25.02 29.90 -169.99 -5.08 19.94 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.60 -16.95 9.11 -34.44 -0.31 -17.26 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.00 0.01 4.40 -27.89 -0.12 -0.12 16 10 C 0.13 2.76 5.61 -4.04 -0.02 2.73 16 11 N -0.72 -12.57 5.56 -60.29 -0.33 -12.91 16 12 C 0.54 9.15 6.07 -10.99 -0.07 9.09 16 13 O -0.55 -11.27 16.61 5.55 0.09 -11.18 16 14 C -0.16 -2.13 6.05 -92.01 -0.56 -2.69 16 15 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 16 C -0.13 -1.48 9.74 -26.98 -0.26 -1.74 16 17 C -0.07 -0.83 2.34 -155.82 -0.36 -1.20 16 18 C -0.09 -1.06 6.68 -25.55 -0.17 -1.23 16 19 C -0.08 -0.90 6.77 -26.75 -0.18 -1.08 16 20 C -0.08 -0.95 6.14 -104.13 -0.64 -1.59 16 21 C -0.11 -1.09 10.03 -39.55 -0.40 -1.49 16 22 C -0.12 -1.07 10.05 -39.63 -0.40 -1.47 16 23 C -0.12 -1.10 10.04 -39.63 -0.40 -1.50 16 24 C -0.10 -1.03 9.98 -39.54 -0.39 -1.43 16 25 C -0.06 -0.69 5.93 -104.41 -0.62 -1.31 16 26 H 0.27 7.93 7.22 -40.82 -0.29 7.63 16 27 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 28 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.40 6.20 8.47 -40.82 -0.35 5.85 16 32 H 0.10 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.11 1.36 7.93 -51.93 -0.41 0.95 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.13 6.85 -51.92 -0.36 0.78 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.12 0.98 8.04 -52.49 -0.42 0.56 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -32.33 344.87 -10.47 -42.80 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.09 Total: 4.53 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -5.00 Total: -21.87 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.42 Total: -39.41 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.33 -10.47 -42.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.064 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds