Wall clock time and date at job start Tue Mar 31 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99767 * 2 1 4 4 H 1.48502 * 109.47375 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46849 * 239.99931 * 3 2 1 6 6 H 1.48499 * 109.46913 * 120.00346 * 3 2 1 7 7 C 1.37877 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99489 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47279 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47242 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99967 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00386 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00272 * 180.02562 * 12 11 10 15 15 H 1.08997 * 115.55875 * 61.57445 * 14 12 11 16 16 C 1.53130 * 117.52041 * 207.39933 * 14 12 11 17 17 C 1.52376 * 59.85099 * 107.44005 * 16 14 12 18 18 C 1.53776 * 121.20286 * 249.48515 * 17 16 14 19 19 C 1.54482 * 102.20510 * 189.98729 * 18 17 16 20 20 C 1.51423 * 105.23467 * 25.73210 * 19 18 17 21 21 C 1.38461 * 130.36502 * 163.17120 * 20 19 18 22 22 C 1.38092 * 120.26975 * 179.97438 * 21 20 19 23 23 C 1.38259 * 119.90997 * 0.02562 * 22 21 20 24 24 C 1.38081 * 119.94090 * 0.02562 * 23 22 21 25 25 C 1.38386 * 109.79695 * 343.14172 * 20 19 18 26 26 H 0.97004 * 119.99762 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47787 * 300.00747 * 9 7 2 28 28 H 1.09005 * 109.46754 * 60.01352 * 9 7 2 29 29 H 1.08997 * 109.47583 * 300.00601 * 10 9 7 30 30 H 1.09006 * 109.47073 * 60.00418 * 10 9 7 31 31 H 0.96992 * 120.00544 * 0.02562 * 11 10 9 32 32 H 1.08996 * 117.51688 * 214.88803 * 16 14 12 33 33 H 1.08999 * 117.50947 * 359.97438 * 16 14 12 34 34 H 1.09002 * 110.85779 * 308.16595 * 18 17 16 35 35 H 1.09007 * 110.85903 * 71.60324 * 18 17 16 36 36 H 1.09004 * 110.28802 * 144.67268 * 19 18 17 37 37 H 1.08994 * 110.29280 * 266.79115 * 19 18 17 38 38 H 1.08006 * 119.86543 * 359.92050 * 21 20 19 39 39 H 1.08003 * 120.04521 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.02782 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.86137 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0018 13 8 3.3995 -6.0980 -0.0014 14 6 1.4333 -7.4031 -0.0030 15 1 0.7931 -7.5757 -0.8681 16 6 2.1235 -8.6191 0.6213 17 6 0.9618 -7.9452 1.3411 18 6 1.1819 -7.1517 2.6398 19 6 -0.2654 -6.8969 3.1161 20 6 -1.0848 -8.0213 2.5184 21 6 -2.3498 -8.4803 2.8442 22 6 -2.9067 -9.5370 2.1513 23 6 -2.1988 -10.1402 1.1283 24 6 -0.9366 -9.6852 0.8020 25 6 -0.3761 -8.6244 1.4941 26 1 -0.4850 -0.8401 0.0004 27 1 0.6246 -2.5571 0.8895 28 1 0.6242 -2.5567 -0.8905 29 1 2.8720 -3.6043 -0.8904 30 1 2.8719 -3.6043 0.8895 31 1 0.5429 -4.9309 -0.0019 32 1 1.9378 -9.5921 0.1665 33 1 3.1227 -8.4749 1.0324 34 1 1.7316 -7.7462 3.3695 35 1 1.6984 -6.2131 2.4383 36 1 -0.3163 -6.9292 4.2044 37 1 -0.6203 -5.9340 2.7487 38 1 -2.9029 -8.0105 3.6441 39 1 -3.8939 -9.8918 2.4081 40 1 -2.6327 -10.9665 0.5848 41 1 -0.3850 -10.1571 0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273070882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:17 Heat of formation + Delta-G solvation = -24.571195 kcal Electronic energy + Delta-G solvation = -21679.062490 eV Core-core repulsion = 18522.608573 eV Total energy + Delta-G solvation = -3156.453918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87763 -40.42220 -37.89021 -36.81951 -35.04445 -34.81481 -31.72394 -31.27837 -29.84537 -27.05300 -25.96595 -24.76101 -23.67988 -23.07136 -21.99554 -21.43278 -20.42001 -18.93984 -17.92627 -17.65493 -17.03644 -16.46840 -16.29897 -16.04066 -15.78062 -15.65249 -15.32975 -14.99946 -14.62516 -14.24584 -14.03790 -13.73436 -13.59126 -13.28847 -13.23849 -12.90160 -12.77510 -12.56403 -12.31851 -12.14095 -12.05666 -11.89216 -11.75483 -11.47449 -11.34185 -11.14379 -10.73650 -10.59901 -10.16629 -9.70879 -9.36133 -8.73831 -6.45180 0.33471 0.47239 1.46707 1.53368 1.60880 1.80860 2.07500 2.54796 2.58121 2.99980 3.11700 3.29035 3.44782 3.50215 3.74399 3.83511 4.01495 4.17206 4.20492 4.28293 4.30608 4.35871 4.39975 4.51803 4.63222 4.64936 4.71102 4.81614 4.83455 4.91475 5.02599 5.04456 5.06632 5.11318 5.24584 5.29218 5.35202 5.55396 5.61616 5.73222 5.90812 6.09673 6.11346 6.43619 6.55438 7.13752 7.35117 8.68186 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.003526 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.783682 B = 7938.139968 C = 8719.224489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.031 4.031 3 Si 1.117 2.883 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.625 4.625 8 H 0.050 0.950 9 C 0.009 3.991 10 C 0.148 3.852 11 N -0.713 5.713 12 C 0.540 3.460 13 O -0.584 6.584 14 C -0.172 4.172 15 H 0.148 0.852 16 C -0.119 4.119 17 C -0.062 4.062 18 C -0.092 4.092 19 C -0.080 4.080 20 C -0.102 4.102 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.109 4.109 25 C -0.076 4.076 26 H 0.258 0.742 27 H 0.005 0.995 28 H 0.004 0.996 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.408 0.592 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 -22.552 4.559 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.229 4.229 3 Si 0.938 3.062 4 H -0.206 1.206 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.663 4.663 8 H 0.068 0.932 9 C -0.029 4.029 10 C 0.024 3.976 11 N -0.363 5.363 12 C 0.327 3.673 13 O -0.465 6.465 14 C -0.193 4.193 15 H 0.165 0.835 16 C -0.156 4.156 17 C -0.063 4.063 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.102 4.102 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.076 4.076 26 H 0.067 0.933 27 H 0.024 0.976 28 H 0.022 0.978 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.243 0.757 32 H 0.151 0.849 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.856 -20.896 4.564 21.933 hybrid contribution -0.248 -1.307 -0.149 1.339 sum -5.104 -22.203 4.415 23.206 Atomic orbital electron populations 1.70927 1.07769 1.30037 1.48070 1.27371 0.96584 1.06583 0.92387 0.82930 0.74158 0.71101 0.78024 1.20602 1.19543 1.19488 1.22307 0.94790 0.93031 1.56143 0.93166 1.19278 0.94878 0.93183 0.95545 1.21073 0.94724 0.81926 0.99854 1.46129 1.10918 1.05488 1.73745 1.20153 0.87155 0.85291 0.74674 1.90656 1.15684 1.88226 1.51909 1.22311 1.04943 0.92474 0.99563 0.83485 1.23054 0.96479 0.95732 1.00383 1.20322 0.93667 1.00543 0.91720 1.21863 0.97147 0.99003 0.94942 1.21033 0.92691 0.96525 1.01415 1.20716 0.95113 0.97151 0.97243 1.20889 0.94145 0.97734 1.01041 1.21411 1.00811 0.95706 0.95808 1.21366 0.94153 1.00756 0.97952 1.20871 0.96107 0.95828 0.99878 1.19694 0.93822 0.96726 0.97383 0.93251 0.97641 0.97796 0.93596 0.93492 0.75674 0.84930 0.88401 0.89179 0.92564 0.89160 0.90773 0.84941 0.83513 0.83360 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.65 21.45 0.29 -56.15 16 2 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 3 Si 1.12 49.91 29.90 68.60 2.05 51.96 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.62 -35.60 9.11 25.60 0.23 -35.36 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.01 0.43 4.40 29.85 0.13 0.57 16 10 C 0.15 6.52 5.61 86.38 0.48 7.01 16 11 N -0.71 -25.48 5.56 -463.06 -2.57 -28.05 16 12 C 0.54 18.56 6.07 87.66 0.53 19.09 16 13 O -0.58 -24.61 16.61 -3.04 -0.05 -24.66 16 14 C -0.17 -4.30 6.05 -11.69 -0.07 -4.37 16 15 H 0.15 3.09 8.14 -2.39 -0.02 3.07 16 16 C -0.12 -2.54 9.74 30.43 0.30 -2.25 16 17 C -0.06 -1.40 2.34 -53.03 -0.12 -1.52 16 18 C -0.09 -2.21 6.68 31.36 0.21 -2.00 16 19 C -0.08 -1.74 6.77 30.58 0.21 -1.54 16 20 C -0.10 -2.18 6.14 -19.55 -0.12 -2.30 16 21 C -0.12 -2.18 10.03 22.29 0.22 -1.96 16 22 C -0.12 -1.80 10.05 22.24 0.22 -1.58 16 23 C -0.12 -1.82 10.04 22.24 0.22 -1.60 16 24 C -0.11 -1.86 9.98 22.30 0.22 -1.64 16 25 C -0.08 -1.59 5.93 -19.73 -0.12 -1.71 16 26 H 0.26 15.63 7.22 -92.70 -0.67 14.96 16 27 H 0.01 0.28 8.01 -2.39 -0.02 0.26 16 28 H 0.00 0.20 8.01 -2.38 -0.02 0.18 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.41 12.92 8.47 -92.71 -0.79 12.14 16 32 H 0.13 2.03 8.13 -2.39 -0.02 2.01 16 33 H 0.10 2.36 7.93 -2.39 -0.02 2.34 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.62 6.85 -2.38 -0.02 1.60 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.14 1.77 8.04 -2.91 -0.02 1.75 16 Total: -1.00 -69.88 344.87 3.08 -66.80 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.34 Total: 22.57 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 3.02 Total: -32.47 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.28 Total: -84.20 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -69.88 3.08 -66.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.229 kcal (2) G-P(sol) polarization free energy of solvation -69.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds