Wall clock time and date at job start Tue Mar 31 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00324 * 2 1 4 4 H 1.48494 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46770 * 299.99979 * 3 2 1 6 6 H 1.48502 * 109.46911 * 59.99489 * 3 2 1 7 7 C 1.37882 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00228 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99626 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.46936 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99915 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99867 * 180.27444 * 12 11 10 15 15 H 1.08997 * 115.55788 * 309.37425 * 14 12 11 16 16 C 1.53124 * 117.51123 * 163.63787 * 14 12 11 17 17 C 1.52372 * 117.51062 * 95.11377 * 14 12 11 18 18 C 1.53787 * 121.19432 * 217.96857 * 17 14 12 19 19 C 1.54480 * 102.20785 * 169.97440 * 18 17 14 20 20 C 1.51418 * 105.23796 * 334.28025 * 19 18 17 21 21 C 1.38466 * 130.36387 * 196.82380 * 20 19 18 22 22 C 1.38098 * 120.26469 * 180.02562 * 21 20 19 23 23 C 1.38255 * 119.91694 * 0.02562 * 22 21 20 24 24 C 1.38087 * 119.93332 * 359.97438 * 23 22 21 25 25 C 1.38382 * 109.79986 * 16.86127 * 20 19 18 26 26 H 0.96997 * 119.99779 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47413 * 59.99385 * 9 7 2 28 28 H 1.09006 * 109.46711 * 299.99124 * 9 7 2 29 29 H 1.08992 * 109.47185 * 59.99586 * 10 9 7 30 30 H 1.08996 * 109.46885 * 299.99106 * 10 9 7 31 31 H 0.96998 * 120.00012 * 359.97438 * 11 10 9 32 32 H 1.09000 * 117.51687 * 359.97438 * 16 14 12 33 33 H 1.08998 * 117.51572 * 145.11218 * 16 14 12 34 34 H 1.09001 * 110.85681 * 288.15848 * 18 17 14 35 35 H 1.09006 * 110.84996 * 51.80109 * 18 17 14 36 36 H 1.08994 * 110.29063 * 215.33978 * 19 18 17 37 37 H 1.09002 * 110.36550 * 93.26179 * 19 18 17 38 38 H 1.08000 * 119.86847 * 0.06802 * 21 20 19 39 39 H 1.07999 * 120.04047 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.03437 * 179.97438 * 23 22 21 41 41 H 1.08003 * 119.85239 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 6 2.1865 -6.0980 0.0031 13 8 3.3993 -6.0980 0.0036 14 6 1.4330 -7.4031 -0.0025 15 1 0.6544 -7.4998 0.7541 16 6 2.2094 -8.6665 -0.3842 17 6 1.1910 -8.0703 -1.3509 18 6 -0.1322 -8.7920 -1.6564 19 6 -0.0156 -9.0597 -3.1734 20 6 0.9181 -7.9882 -3.6959 21 6 1.1416 -7.5463 -4.9890 22 6 2.0559 -6.5404 -5.2325 23 6 2.7519 -5.9720 -4.1818 24 6 2.5308 -6.4109 -2.8913 25 6 1.6143 -7.4194 -2.6440 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8712 -3.6039 0.8922 30 1 2.8724 -3.6048 -0.8878 31 1 0.5427 -4.9308 0.0024 32 1 3.2649 -8.5535 -0.6316 33 1 1.9409 -9.5944 0.1208 34 1 -0.2012 -9.7276 -1.1014 35 1 -0.9844 -8.1476 -1.4405 36 1 -0.9927 -8.9740 -3.6485 37 1 0.4060 -10.0487 -3.3527 38 1 0.5982 -7.9896 -5.8104 39 1 2.2271 -6.1983 -6.2424 40 1 3.4677 -5.1855 -4.3701 41 1 3.0749 -5.9656 -2.0714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273070884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:22 Heat of formation + Delta-G solvation = -0.275780 kcal Electronic energy + Delta-G solvation = -22037.470737 eV Core-core repulsion = 18882.070348 eV Total energy + Delta-G solvation = -3155.400389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84606 -38.93910 -36.89785 -34.86056 -33.74123 -32.81428 -30.61336 -29.69882 -28.90117 -25.62821 -24.86928 -23.28880 -22.67844 -21.06333 -20.92056 -20.01885 -19.33914 -17.10537 -16.40165 -16.05451 -15.67350 -15.21288 -15.03802 -14.91785 -14.53383 -14.23379 -13.90114 -13.51478 -13.14023 -12.79680 -12.67123 -12.46314 -12.29927 -12.11298 -11.79056 -11.70074 -11.20268 -11.11603 -11.05814 -10.77805 -10.62574 -10.49811 -10.38120 -10.21556 -9.76909 -9.45984 -9.17830 -8.69963 -8.54048 -8.38415 -8.33828 -6.09351 -4.12119 1.34578 1.47715 2.84004 3.28133 3.35576 3.40128 3.51350 3.70107 4.02724 4.29129 4.40082 4.44563 4.52803 4.76661 4.85581 5.11151 5.13071 5.26482 5.26668 5.27871 5.31944 5.46571 5.54657 5.64266 5.67201 5.74193 5.86093 5.92013 6.04227 6.05738 6.22797 6.33967 6.34443 6.51700 6.65184 6.70857 6.74486 6.92678 7.08302 7.52212 7.62054 7.88882 8.02576 8.27806 8.65161 8.94094 9.52771 11.02322 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.004068 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.633336 B = 6881.233705 C = 7502.425577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.715 5.715 12 C 0.539 3.461 13 O -0.550 6.550 14 C -0.175 4.175 15 H 0.129 0.871 16 C -0.125 4.125 17 C -0.068 4.068 18 C -0.085 4.085 19 C -0.077 4.077 20 C -0.095 4.095 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.102 4.102 25 C -0.066 4.066 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.398 0.602 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -19.623 -6.327 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.363 5.363 12 C 0.324 3.676 13 O -0.430 6.430 14 C -0.196 4.196 15 H 0.146 0.854 16 C -0.163 4.163 17 C -0.069 4.069 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.095 4.095 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.135 4.135 24 C -0.120 4.120 25 C -0.066 4.066 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.232 0.768 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.767 -19.464 -6.325 20.481 hybrid contribution -0.106 1.170 0.037 1.175 sum -0.873 -18.295 -6.288 19.365 Atomic orbital electron populations 1.69965 1.06093 1.26741 1.50470 1.24990 0.94871 0.99384 0.94992 0.86473 0.80186 0.83397 0.77626 1.19576 1.20926 1.20928 1.21082 0.93243 0.90374 1.51217 0.92234 1.19321 0.94192 0.91108 0.97849 1.21727 0.96058 0.81551 1.00665 1.46284 1.10625 1.06337 1.73065 1.19474 0.87552 0.84543 0.76006 1.90657 1.13786 1.87662 1.50883 1.22355 1.04079 0.93280 0.99877 0.85369 1.23025 0.98265 0.95182 0.99788 1.20389 0.97827 1.00992 0.87659 1.21866 0.94882 0.99882 0.95545 1.21004 0.98388 0.97074 0.94890 1.20489 0.98172 0.97650 0.93229 1.20519 0.99299 0.98085 0.95353 1.21049 0.96715 0.96761 0.99042 1.21090 1.00022 0.99955 0.92423 1.21181 0.97128 0.95687 0.97972 1.19594 0.97208 0.96532 0.93224 0.92911 0.95923 0.95971 0.92544 0.92662 0.76809 0.87364 0.87580 0.90219 0.90078 0.90583 0.90214 0.86461 0.86007 0.85801 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 11 N -0.71 -12.74 5.56 -60.30 -0.33 -13.07 16 12 C 0.54 9.24 5.23 -10.98 -0.06 9.18 16 13 O -0.55 -11.20 14.88 5.56 0.08 -11.12 16 14 C -0.17 -2.26 6.06 -92.03 -0.56 -2.82 16 15 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 16 C -0.13 -1.45 9.78 -26.90 -0.26 -1.71 16 17 C -0.07 -0.82 2.34 -155.74 -0.36 -1.18 16 18 C -0.08 -0.77 6.85 -25.55 -0.17 -0.94 16 19 C -0.08 -0.71 6.77 -26.75 -0.18 -0.89 16 20 C -0.10 -1.19 6.14 -104.13 -0.64 -1.83 16 21 C -0.11 -1.36 10.04 -39.55 -0.40 -1.76 16 22 C -0.12 -1.47 10.05 -39.63 -0.40 -1.87 16 23 C -0.12 -1.69 10.05 -39.63 -0.40 -2.09 16 24 C -0.10 -1.64 9.25 -39.54 -0.37 -2.00 16 25 C -0.07 -0.93 5.80 -104.41 -0.61 -1.54 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.40 6.36 8.47 -40.82 -0.35 6.01 16 32 H 0.11 1.45 7.77 -51.93 -0.40 1.05 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.13 2.46 4.79 -52.48 -0.25 2.21 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -31.97 340.85 -10.42 -42.39 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.04 Total: 5.65 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -4.98 Total: -19.91 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.40 Total: -38.57 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.97 -10.42 -42.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.111 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds