Wall clock time and date at job start Tue Mar 31 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00324 * 2 1 4 4 H 1.48494 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46770 * 299.99979 * 3 2 1 6 6 H 1.48502 * 109.46911 * 59.99489 * 3 2 1 7 7 C 1.37882 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00228 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99626 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.46936 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99915 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99867 * 180.27444 * 12 11 10 15 15 H 1.08997 * 115.55788 * 309.37425 * 14 12 11 16 16 C 1.53124 * 117.51123 * 163.63787 * 14 12 11 17 17 C 1.52372 * 117.51062 * 95.11377 * 14 12 11 18 18 C 1.53787 * 121.19432 * 217.96857 * 17 14 12 19 19 C 1.54480 * 102.20785 * 169.97440 * 18 17 14 20 20 C 1.51418 * 105.23796 * 334.28025 * 19 18 17 21 21 C 1.38466 * 130.36387 * 196.82380 * 20 19 18 22 22 C 1.38098 * 120.26469 * 180.02562 * 21 20 19 23 23 C 1.38255 * 119.91694 * 0.02562 * 22 21 20 24 24 C 1.38087 * 119.93332 * 359.97438 * 23 22 21 25 25 C 1.38382 * 109.79986 * 16.86127 * 20 19 18 26 26 H 0.96997 * 119.99779 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47413 * 59.99385 * 9 7 2 28 28 H 1.09006 * 109.46711 * 299.99124 * 9 7 2 29 29 H 1.08992 * 109.47185 * 59.99586 * 10 9 7 30 30 H 1.08996 * 109.46885 * 299.99106 * 10 9 7 31 31 H 0.96998 * 120.00012 * 359.97438 * 11 10 9 32 32 H 1.09000 * 117.51687 * 359.97438 * 16 14 12 33 33 H 1.08998 * 117.51572 * 145.11218 * 16 14 12 34 34 H 1.09001 * 110.85681 * 288.15848 * 18 17 14 35 35 H 1.09006 * 110.84996 * 51.80109 * 18 17 14 36 36 H 1.08994 * 110.29063 * 215.33978 * 19 18 17 37 37 H 1.09002 * 110.36550 * 93.26179 * 19 18 17 38 38 H 1.08000 * 119.86847 * 0.06802 * 21 20 19 39 39 H 1.07999 * 120.04047 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.03437 * 179.97438 * 23 22 21 41 41 H 1.08003 * 119.85239 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 6 2.1865 -6.0980 0.0031 13 8 3.3993 -6.0980 0.0036 14 6 1.4330 -7.4031 -0.0025 15 1 0.6544 -7.4998 0.7541 16 6 2.2094 -8.6665 -0.3842 17 6 1.1910 -8.0703 -1.3509 18 6 -0.1322 -8.7920 -1.6564 19 6 -0.0156 -9.0597 -3.1734 20 6 0.9181 -7.9882 -3.6959 21 6 1.1416 -7.5463 -4.9890 22 6 2.0559 -6.5404 -5.2325 23 6 2.7519 -5.9720 -4.1818 24 6 2.5308 -6.4109 -2.8913 25 6 1.6143 -7.4194 -2.6440 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8712 -3.6039 0.8922 30 1 2.8724 -3.6048 -0.8878 31 1 0.5427 -4.9308 0.0024 32 1 3.2649 -8.5535 -0.6316 33 1 1.9409 -9.5944 0.1208 34 1 -0.2012 -9.7276 -1.1014 35 1 -0.9844 -8.1476 -1.4405 36 1 -0.9927 -8.9740 -3.6485 37 1 0.4060 -10.0487 -3.3527 38 1 0.5982 -7.9896 -5.8104 39 1 2.2271 -6.1983 -6.2424 40 1 3.4677 -5.1855 -4.3701 41 1 3.0749 -5.9656 -2.0714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273070884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:20 Heat of formation + Delta-G solvation = -18.631633 kcal Electronic energy + Delta-G solvation = -22038.266706 eV Core-core repulsion = 18882.070348 eV Total energy + Delta-G solvation = -3156.196359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.89302 -40.22738 -37.94444 -36.59643 -34.83419 -34.66243 -31.71955 -31.51872 -29.79013 -27.31772 -25.92178 -24.72167 -23.63411 -22.76692 -22.01267 -21.21259 -20.44295 -18.66437 -18.19883 -17.12355 -16.81151 -16.63388 -16.50002 -16.23204 -15.76588 -15.60664 -15.16107 -14.69835 -14.50864 -14.33103 -13.99036 -13.69701 -13.31257 -13.24430 -13.04927 -12.98665 -12.62370 -12.55489 -12.50191 -12.29568 -12.04249 -11.79912 -11.63502 -11.48881 -11.35721 -11.20435 -10.80331 -10.63935 -10.04683 -9.73342 -9.34348 -8.27048 -6.37925 0.33385 0.43685 1.38561 1.39265 1.52653 1.53705 2.17875 2.41410 2.63497 3.02852 3.07586 3.39411 3.51896 3.59959 3.85514 3.93007 4.14199 4.16037 4.18473 4.40641 4.42111 4.46715 4.55538 4.61847 4.65792 4.77738 4.80591 4.84502 4.95019 5.04025 5.14056 5.16732 5.24259 5.28687 5.30987 5.45819 5.52755 5.53110 5.61672 5.68933 5.74912 6.08808 6.12513 6.59481 6.74963 7.24636 7.31605 8.85177 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.004068 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.633336 B = 6881.233705 C = 7502.425577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.026 3.974 10 C 0.144 3.856 11 N -0.712 5.712 12 C 0.537 3.463 13 O -0.588 6.588 14 C -0.184 4.184 15 H 0.161 0.839 16 C -0.117 4.117 17 C -0.065 4.065 18 C -0.078 4.078 19 C -0.074 4.074 20 C -0.098 4.098 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.090 4.090 26 H 0.266 0.734 27 H 0.005 0.995 28 H 0.009 0.991 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.409 0.591 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 -21.597 -6.887 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.012 4.012 10 C 0.020 3.980 11 N -0.362 5.362 12 C 0.325 3.675 13 O -0.470 6.470 14 C -0.205 4.205 15 H 0.178 0.822 16 C -0.154 4.154 17 C -0.065 4.065 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.098 4.098 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.160 4.160 24 C -0.152 4.152 25 C -0.090 4.090 26 H 0.075 0.925 27 H 0.023 0.977 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.244 0.756 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.137 0.863 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.363 -21.460 -6.884 22.661 hybrid contribution 0.416 1.766 0.153 1.820 sum -1.947 -19.694 -6.731 20.904 Atomic orbital electron populations 1.70063 1.07553 1.27990 1.50928 1.25863 0.95786 1.03065 0.94276 0.85396 0.78910 0.78721 0.78031 1.19065 1.20113 1.19985 1.21467 0.93473 0.91930 1.51689 0.92501 1.19104 0.94128 0.91790 0.96172 1.21178 0.95008 0.82445 0.99373 1.46106 1.10973 1.05530 1.73565 1.20252 0.87329 0.85597 0.74280 1.90631 1.15807 1.88296 1.52290 1.22387 1.05088 0.90974 1.02052 0.82172 1.23131 0.96799 0.95874 0.99552 1.20634 0.99490 1.00375 0.86041 1.21978 0.92751 1.00941 0.95774 1.21126 0.98515 0.96543 0.94839 1.21016 0.97951 0.97921 0.92894 1.20958 0.98694 0.97347 0.96360 1.21358 0.96253 0.96675 0.99455 1.21223 1.01112 1.00772 0.92886 1.21101 0.98793 0.97640 0.97650 1.19957 0.97130 0.96416 0.95477 0.92474 0.97713 0.97237 0.93581 0.94222 0.75618 0.90161 0.83553 0.87031 0.89565 0.88600 0.88314 0.83220 0.83578 0.86278 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.33 5.09 29.85 0.15 1.49 16 10 C 0.14 6.53 5.61 86.38 0.48 7.02 16 11 N -0.71 -26.50 5.56 -463.06 -2.57 -29.08 16 12 C 0.54 19.07 5.23 87.66 0.46 19.53 16 13 O -0.59 -25.42 14.88 -3.02 -0.04 -25.47 16 14 C -0.18 -4.54 6.06 -11.71 -0.07 -4.61 16 15 H 0.16 2.89 8.14 -2.39 -0.02 2.87 16 16 C -0.12 -2.49 9.78 30.48 0.30 -2.19 16 17 C -0.06 -1.43 2.34 -52.98 -0.12 -1.55 16 18 C -0.08 -1.07 6.85 31.36 0.21 -0.86 16 19 C -0.07 -1.04 6.77 30.58 0.21 -0.83 16 20 C -0.10 -2.22 6.14 -19.55 -0.12 -2.34 16 21 C -0.12 -2.50 10.04 22.29 0.22 -2.28 16 22 C -0.12 -2.92 10.05 22.24 0.22 -2.70 16 23 C -0.14 -4.37 10.05 22.24 0.22 -4.14 16 24 C -0.13 -4.58 9.25 22.30 0.21 -4.38 16 25 C -0.09 -2.53 5.80 -19.73 -0.11 -2.65 16 26 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.41 13.40 8.47 -92.71 -0.79 12.61 16 32 H 0.08 2.19 7.77 -2.39 -0.02 2.18 16 33 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 0.89 8.12 -2.39 -0.02 0.87 16 35 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.12 3.54 8.06 -2.91 -0.02 3.51 16 41 H 0.10 4.07 4.79 -2.91 -0.01 4.06 16 Total: -1.00 -72.74 340.85 2.90 -69.84 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.24 Total: 23.82 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 2.96 Total: -30.69 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.29 Total: -83.84 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.04 Total: -25.47 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.74 2.90 -69.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.210 kcal (2) G-P(sol) polarization free energy of solvation -72.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds