Wall clock time and date at job start Tue Mar 31 2020 06:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47208 * 300.00018 * 3 2 1 6 6 H 1.48503 * 109.47171 * 59.99685 * 3 2 1 7 7 C 1.37880 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99894 * 359.72613 * 7 2 1 10 10 C 1.53002 * 109.47006 * 180.27455 * 9 7 2 11 11 N 1.46499 * 109.47092 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00204 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00117 * 180.02562 * 12 11 10 15 15 H 1.08991 * 115.56009 * 333.81432 * 14 12 11 16 16 C 1.53130 * 117.51216 * 188.06587 * 14 12 11 17 17 C 1.52380 * 59.85109 * 252.55968 * 16 14 12 18 18 C 1.53777 * 121.20725 * 110.50746 * 17 16 14 19 19 C 1.54474 * 102.20766 * 170.01943 * 18 17 16 20 20 C 1.51429 * 105.22616 * 334.24526 * 19 18 17 21 21 C 1.38465 * 130.36527 * 196.83264 * 20 19 18 22 22 C 1.38095 * 120.26779 * 180.11746 * 21 20 19 23 23 C 1.38248 * 119.91181 * 0.02562 * 22 21 20 24 24 C 1.38084 * 119.93978 * 359.97438 * 23 22 21 25 25 C 1.38378 * 109.79701 * 16.91504 * 20 19 18 26 26 H 0.96999 * 119.99369 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47461 * 300.27395 * 9 7 2 28 28 H 1.09007 * 109.47195 * 60.27786 * 9 7 2 29 29 H 1.09003 * 109.47233 * 299.99781 * 10 9 7 30 30 H 1.09002 * 109.47275 * 60.00360 * 10 9 7 31 31 H 0.97001 * 119.99990 * 0.02562 * 11 10 9 32 32 H 1.08992 * 117.51769 * 0.02562 * 16 14 12 33 33 H 1.08998 * 117.51314 * 145.07106 * 16 14 12 34 34 H 1.08997 * 110.85757 * 288.19931 * 18 17 16 35 35 H 1.08997 * 110.85558 * 51.83883 * 18 17 16 36 36 H 1.08996 * 110.29536 * 215.30822 * 19 18 17 37 37 H 1.08998 * 110.29617 * 93.18025 * 19 18 17 38 38 H 1.08001 * 119.86564 * 0.14733 * 21 20 19 39 39 H 1.08003 * 120.04684 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.03245 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.85869 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0074 10 6 2.2452 -3.6621 0.0135 11 7 1.5127 -4.9308 0.0207 12 6 2.1865 -6.0980 0.0264 13 8 3.3993 -6.0980 0.0260 14 6 1.4330 -7.4031 0.0333 15 1 0.4339 -7.3669 0.4673 16 6 2.2439 -8.6870 0.2301 17 6 1.6594 -8.3530 -1.1369 18 6 2.5647 -7.9599 -2.3161 19 6 1.5786 -7.9771 -3.5050 20 6 0.4835 -8.9412 -3.0994 21 6 -0.4782 -9.5792 -3.8645 22 6 -1.3910 -10.4275 -3.2693 23 6 -1.3455 -10.6410 -1.9042 24 6 -0.3875 -10.0060 -1.1389 25 6 0.5301 -9.1555 -1.7331 26 1 -0.4849 0.8401 -0.0004 27 1 0.6243 -2.5523 0.8976 28 1 0.6243 -2.5616 -0.8824 29 1 2.8719 -3.6091 -0.8768 30 1 2.8719 -3.5998 0.9032 31 1 0.5427 -4.9307 0.0206 32 1 3.3220 -8.5876 0.3550 33 1 1.7780 -9.4954 0.7937 34 1 2.9801 -6.9627 -2.1709 35 1 3.3572 -8.6945 -2.4586 36 1 2.0791 -8.3310 -4.4063 37 1 1.1648 -6.9819 -3.6674 38 1 -0.5144 -9.4130 -4.9310 39 1 -2.1394 -10.9236 -3.8695 40 1 -2.0587 -11.3037 -1.4367 41 1 -0.3534 -10.1734 -0.0725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273070887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:24 Heat of formation + Delta-G solvation = -3.248466 kcal Electronic energy + Delta-G solvation = -21461.004169 eV Core-core repulsion = 18305.474875 eV Total energy + Delta-G solvation = -3155.529295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.86933 -39.14967 -36.82020 -34.82685 -33.89755 -32.83095 -30.84785 -29.70161 -29.00377 -25.73566 -24.83796 -23.27632 -22.84241 -21.16549 -20.93298 -20.20681 -19.19266 -16.89886 -16.68526 -16.28526 -15.47744 -15.31035 -15.08417 -15.00035 -14.50448 -14.48365 -14.10094 -13.53937 -13.23659 -13.03479 -12.74382 -12.38716 -12.26757 -12.13320 -11.87276 -11.58417 -11.22691 -11.20463 -11.05158 -10.94737 -10.64443 -10.48579 -10.40468 -10.31939 -9.81464 -9.48101 -9.20429 -8.95151 -8.58960 -8.50710 -8.34763 -6.10201 -4.13047 1.11568 1.21994 2.75762 3.27710 3.35186 3.39844 3.53478 3.57013 3.99436 4.28106 4.33602 4.42605 4.57573 4.75523 4.81770 4.85294 4.92069 5.16659 5.21762 5.26921 5.32313 5.35694 5.44780 5.54669 5.66403 5.76020 5.85871 5.92587 5.97881 6.04478 6.09765 6.31339 6.33042 6.33508 6.34748 6.52552 6.72534 6.81930 6.91744 7.51193 7.60766 7.88090 8.01881 8.26933 8.64821 8.93246 9.51887 11.01430 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.003156 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.582494 B = 8868.809715 C = 9277.275847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.717 5.717 12 C 0.536 3.464 13 O -0.549 6.549 14 C -0.168 4.168 15 H 0.121 0.879 16 C -0.130 4.130 17 C -0.062 4.062 18 C -0.088 4.088 19 C -0.083 4.083 20 C -0.085 4.085 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.103 4.103 25 C -0.060 4.060 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.398 0.602 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 -22.210 -4.943 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.366 5.366 12 C 0.322 3.678 13 O -0.428 6.428 14 C -0.189 4.189 15 H 0.139 0.861 16 C -0.167 4.167 17 C -0.062 4.062 18 C -0.125 4.125 19 C -0.120 4.120 20 C -0.085 4.085 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.121 4.121 25 C -0.060 4.060 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.232 0.768 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.701 -22.040 -4.946 22.652 hybrid contribution -0.370 0.995 0.100 1.067 sum -2.070 -21.044 -4.846 21.694 Atomic orbital electron populations 1.69969 1.06090 1.26761 1.50444 1.25003 0.94897 0.99433 0.94998 0.86460 0.80169 0.83336 0.77625 1.19574 1.20926 1.20925 1.21086 0.93267 0.90370 1.51234 0.92203 1.19330 0.94206 0.91139 0.97861 1.21732 0.96040 0.81479 1.00758 1.46277 1.10593 1.06386 1.73327 1.19453 0.87495 0.84400 0.76466 1.90660 1.13751 1.87631 1.50712 1.22386 1.01728 0.90666 1.04147 0.86107 1.22947 1.00992 0.95889 0.96903 1.20233 0.96558 0.99290 0.90144 1.21872 0.96267 1.03124 0.91246 1.21114 0.93886 0.98330 0.98682 1.20632 0.96671 0.97150 0.94054 1.20623 0.95032 0.97411 0.99718 1.21039 0.98881 0.98764 0.95022 1.20997 0.98683 1.00357 0.94073 1.20607 0.94784 0.96873 0.99868 1.19696 0.95522 0.96776 0.94050 0.92898 0.95938 0.95942 0.92574 0.92537 0.76824 0.86861 0.87955 0.89455 0.90193 0.90460 0.89746 0.86185 0.85941 0.85916 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 11 N -0.72 -12.68 5.56 -60.29 -0.33 -13.02 16 12 C 0.54 9.10 6.55 -10.98 -0.07 9.03 16 13 O -0.55 -10.99 15.43 5.56 0.09 -10.90 16 14 C -0.17 -2.20 6.06 -92.00 -0.56 -2.75 16 15 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 16 C -0.13 -1.49 9.74 -26.98 -0.26 -1.76 16 17 C -0.06 -0.75 2.34 -155.81 -0.36 -1.11 16 18 C -0.09 -1.08 6.62 -25.55 -0.17 -1.25 16 19 C -0.08 -0.92 6.77 -26.75 -0.18 -1.10 16 20 C -0.09 -0.97 6.14 -104.13 -0.64 -1.61 16 21 C -0.11 -1.10 10.03 -39.55 -0.40 -1.49 16 22 C -0.12 -1.07 10.05 -39.63 -0.40 -1.47 16 23 C -0.12 -1.11 10.04 -39.63 -0.40 -1.51 16 24 C -0.10 -1.04 9.98 -39.54 -0.39 -1.44 16 25 C -0.06 -0.70 5.92 -104.41 -0.62 -1.32 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.40 6.25 8.47 -40.82 -0.35 5.90 16 32 H 0.11 1.42 7.70 -51.93 -0.40 1.02 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.27 6.30 -51.93 -0.33 0.95 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.12 1.00 8.05 -52.48 -0.42 0.58 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -31.49 344.66 -10.48 -41.96 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.11 Total: 4.10 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -5.03 Total: -18.28 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.40 Total: -38.44 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.49 -10.48 -41.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.715 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds