Wall clock time and date at job start Tue Mar 31 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47208 * 300.00018 * 3 2 1 6 6 H 1.48503 * 109.47171 * 59.99685 * 3 2 1 7 7 C 1.37880 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99894 * 359.72613 * 7 2 1 10 10 C 1.53002 * 109.47006 * 180.27455 * 9 7 2 11 11 N 1.46499 * 109.47092 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00204 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00117 * 180.02562 * 12 11 10 15 15 H 1.08991 * 115.56009 * 333.81432 * 14 12 11 16 16 C 1.53130 * 117.51216 * 188.06587 * 14 12 11 17 17 C 1.52380 * 59.85109 * 252.55968 * 16 14 12 18 18 C 1.53777 * 121.20725 * 110.50746 * 17 16 14 19 19 C 1.54474 * 102.20766 * 170.01943 * 18 17 16 20 20 C 1.51429 * 105.22616 * 334.24526 * 19 18 17 21 21 C 1.38465 * 130.36527 * 196.83264 * 20 19 18 22 22 C 1.38095 * 120.26779 * 180.11746 * 21 20 19 23 23 C 1.38248 * 119.91181 * 0.02562 * 22 21 20 24 24 C 1.38084 * 119.93978 * 359.97438 * 23 22 21 25 25 C 1.38378 * 109.79701 * 16.91504 * 20 19 18 26 26 H 0.96999 * 119.99369 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47461 * 300.27395 * 9 7 2 28 28 H 1.09007 * 109.47195 * 60.27786 * 9 7 2 29 29 H 1.09003 * 109.47233 * 299.99781 * 10 9 7 30 30 H 1.09002 * 109.47275 * 60.00360 * 10 9 7 31 31 H 0.97001 * 119.99990 * 0.02562 * 11 10 9 32 32 H 1.08992 * 117.51769 * 0.02562 * 16 14 12 33 33 H 1.08998 * 117.51314 * 145.07106 * 16 14 12 34 34 H 1.08997 * 110.85757 * 288.19931 * 18 17 16 35 35 H 1.08997 * 110.85558 * 51.83883 * 18 17 16 36 36 H 1.08996 * 110.29536 * 215.30822 * 19 18 17 37 37 H 1.08998 * 110.29617 * 93.18025 * 19 18 17 38 38 H 1.08001 * 119.86564 * 0.14733 * 21 20 19 39 39 H 1.08003 * 120.04684 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.03245 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.85869 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0074 10 6 2.2452 -3.6621 0.0135 11 7 1.5127 -4.9308 0.0207 12 6 2.1865 -6.0980 0.0264 13 8 3.3993 -6.0980 0.0260 14 6 1.4330 -7.4031 0.0333 15 1 0.4339 -7.3669 0.4673 16 6 2.2439 -8.6870 0.2301 17 6 1.6594 -8.3530 -1.1369 18 6 2.5647 -7.9599 -2.3161 19 6 1.5786 -7.9771 -3.5050 20 6 0.4835 -8.9412 -3.0994 21 6 -0.4782 -9.5792 -3.8645 22 6 -1.3910 -10.4275 -3.2693 23 6 -1.3455 -10.6410 -1.9042 24 6 -0.3875 -10.0060 -1.1389 25 6 0.5301 -9.1555 -1.7331 26 1 -0.4849 0.8401 -0.0004 27 1 0.6243 -2.5523 0.8976 28 1 0.6243 -2.5616 -0.8824 29 1 2.8719 -3.6091 -0.8768 30 1 2.8719 -3.5998 0.9032 31 1 0.5427 -4.9307 0.0206 32 1 3.3220 -8.5876 0.3550 33 1 1.7780 -9.4954 0.7937 34 1 2.9801 -6.9627 -2.1709 35 1 3.3572 -8.6945 -2.4586 36 1 2.0791 -8.3310 -4.4063 37 1 1.1648 -6.9819 -3.6674 38 1 -0.5144 -9.4130 -4.9310 39 1 -2.1394 -10.9236 -3.8695 40 1 -2.0587 -11.3037 -1.4367 41 1 -0.3534 -10.1734 -0.0725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273070887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:23 Heat of formation + Delta-G solvation = -20.316323 kcal Electronic energy + Delta-G solvation = -21461.744287 eV Core-core repulsion = 18305.474875 eV Total energy + Delta-G solvation = -3156.269412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84188 -40.34811 -37.83242 -36.51835 -34.83565 -34.77757 -31.78842 -31.41165 -29.80905 -27.36642 -25.95995 -24.69463 -23.63208 -22.75251 -21.95165 -21.36157 -20.30832 -18.61623 -17.94057 -17.57020 -16.62283 -16.51007 -16.37108 -16.20985 -15.95863 -15.73969 -15.07930 -14.77539 -14.63751 -14.30545 -14.04385 -13.55502 -13.26740 -13.21202 -13.17349 -12.98535 -12.71031 -12.55802 -12.49475 -12.25932 -12.00599 -11.73212 -11.70427 -11.47571 -11.40181 -11.30827 -10.85026 -10.62808 -10.04114 -9.68729 -9.33895 -8.25895 -6.36621 0.34793 0.49233 1.39914 1.40781 1.49262 1.54075 2.18124 2.42615 2.69147 3.05878 3.08801 3.35285 3.48626 3.60482 3.77744 3.89696 4.06184 4.19907 4.22931 4.38947 4.40390 4.46519 4.47162 4.55798 4.67104 4.74279 4.81806 4.84633 4.90282 4.97206 5.07553 5.08705 5.14219 5.25924 5.29089 5.47428 5.55045 5.57633 5.63433 5.75780 5.76604 6.11837 6.13890 6.59908 6.76750 7.24365 7.32897 8.86220 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.003156 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.582494 B = 8868.809715 C = 9277.275847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.142 3.858 11 N -0.715 5.715 12 C 0.537 3.463 13 O -0.582 6.582 14 C -0.176 4.176 15 H 0.142 0.858 16 C -0.118 4.118 17 C -0.057 4.057 18 C -0.091 4.091 19 C -0.080 4.080 20 C -0.104 4.104 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.109 4.109 25 C -0.077 4.077 26 H 0.266 0.734 27 H 0.008 0.992 28 H 0.007 0.993 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.409 0.591 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -23.701 -5.030 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.365 5.365 12 C 0.324 3.676 13 O -0.463 6.463 14 C -0.197 4.197 15 H 0.160 0.840 16 C -0.155 4.155 17 C -0.058 4.058 18 C -0.129 4.129 19 C -0.117 4.117 20 C -0.104 4.104 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.127 4.127 25 C -0.077 4.077 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.244 0.756 32 H 0.118 0.882 33 H 0.151 0.849 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.152 0.848 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.557 -23.553 -5.034 24.221 hybrid contribution -0.140 1.392 0.092 1.402 sum -2.697 -22.162 -4.942 22.866 Atomic orbital electron populations 1.70069 1.07562 1.27967 1.51003 1.25888 0.95811 1.03151 0.94371 0.85382 0.78953 0.78682 0.77945 1.18947 1.20165 1.20150 1.21486 0.93563 0.91893 1.51532 0.92317 1.19131 0.94206 0.91837 0.96264 1.21220 0.95000 0.82183 0.99756 1.46119 1.11036 1.05591 1.73751 1.20096 0.87267 0.85248 0.74938 1.90637 1.15452 1.88190 1.52041 1.22337 1.02453 0.88795 1.06119 0.84025 1.23054 1.00295 0.95364 0.96768 1.20249 0.96905 0.98659 0.89999 1.21844 0.96943 1.01629 0.92450 1.21058 0.93883 0.98022 0.98751 1.20750 0.97325 0.97822 0.94491 1.20890 0.94883 0.97440 1.00559 1.21414 0.98791 0.98043 0.95500 1.21370 0.98598 1.00115 0.94173 1.20878 0.94457 0.96375 1.00978 1.19721 0.96061 0.97812 0.94144 0.92515 0.97361 0.97475 0.93614 0.93498 0.75581 0.88169 0.84921 0.92359 0.89371 0.89001 0.90936 0.84799 0.83449 0.83346 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.55 -30.88 9.11 25.60 0.23 -30.64 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.18 5.09 29.85 0.15 1.34 16 10 C 0.14 6.26 5.61 86.38 0.48 6.74 16 11 N -0.72 -25.85 5.56 -463.05 -2.57 -28.43 16 12 C 0.54 18.49 6.55 87.66 0.57 19.06 16 13 O -0.58 -23.99 15.43 -3.02 -0.05 -24.04 16 14 C -0.18 -4.46 6.06 -11.69 -0.07 -4.53 16 15 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 16 C -0.12 -2.54 9.74 30.43 0.30 -2.25 16 17 C -0.06 -1.35 2.34 -53.03 -0.12 -1.47 16 18 C -0.09 -2.29 6.62 31.36 0.21 -2.08 16 19 C -0.08 -1.77 6.77 30.58 0.21 -1.57 16 20 C -0.10 -2.25 6.14 -19.54 -0.12 -2.37 16 21 C -0.12 -2.16 10.03 22.29 0.22 -1.93 16 22 C -0.12 -1.80 10.05 22.24 0.22 -1.58 16 23 C -0.12 -1.85 10.04 22.24 0.22 -1.62 16 24 C -0.11 -1.90 9.98 22.30 0.22 -1.68 16 25 C -0.08 -1.66 5.92 -19.73 -0.12 -1.78 16 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 31 H 0.41 13.00 8.47 -92.71 -0.79 12.21 16 32 H 0.10 2.46 7.70 -2.39 -0.02 2.44 16 33 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.79 6.30 -2.39 -0.02 1.77 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.14 1.82 8.05 -2.91 -0.02 1.79 16 Total: -1.00 -68.11 344.66 3.01 -65.10 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.24 Total: 21.40 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 3.08 Total: -25.53 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -2.29 Total: -82.85 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.11 3.01 -65.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.780 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds