Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00428 * 2 1 4 4 H 1.48502 * 109.46823 * 270.00297 * 3 2 1 5 5 H 1.48501 * 109.46865 * 29.99921 * 3 2 1 6 6 H 1.48498 * 109.47345 * 149.99924 * 3 2 1 7 7 C 1.37878 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00165 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99939 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47324 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47497 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00346 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99719 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99903 * 179.97438 * 12 11 10 15 15 H 1.08998 * 115.56025 * 62.41248 * 14 12 11 16 16 C 1.53121 * 117.54320 * 208.19816 * 14 12 11 17 17 C 1.52368 * 117.51251 * 276.67126 * 14 12 11 18 18 C 1.53780 * 121.20534 * 141.99499 * 17 14 12 19 19 C 1.54476 * 102.21170 * 189.99706 * 18 17 14 20 20 C 1.51425 * 105.23181 * 25.72136 * 19 18 17 21 21 C 1.38469 * 130.35954 * 163.16539 * 20 19 18 22 22 C 1.38095 * 120.26769 * 179.97438 * 21 20 19 23 23 C 1.38261 * 119.90807 * 359.94442 * 22 21 20 24 24 C 1.38078 * 119.94041 * 0.03857 * 23 22 21 25 25 C 1.38384 * 109.80286 * 343.14372 * 20 19 18 26 26 H 0.97002 * 120.00100 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46730 * 60.00314 * 9 7 2 28 28 H 1.08994 * 109.47765 * 300.00647 * 9 7 2 29 29 H 1.09006 * 109.47026 * 60.00415 * 10 9 7 30 30 H 1.09002 * 109.47148 * 300.00563 * 10 9 7 31 31 H 0.97001 * 119.99966 * 0.02562 * 11 10 9 32 32 H 1.08997 * 117.51659 * 359.97438 * 16 14 12 33 33 H 1.09004 * 117.51403 * 214.87099 * 16 14 12 34 34 H 1.09003 * 110.85632 * 308.18263 * 18 17 14 35 35 H 1.09001 * 110.85309 * 71.81507 * 18 17 14 36 36 H 1.08996 * 110.28987 * 144.66384 * 19 18 17 37 37 H 1.09004 * 110.29022 * 266.78918 * 19 18 17 38 38 H 1.07999 * 119.86684 * 359.90391 * 21 20 19 39 39 H 1.07996 * 120.04702 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.02338 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.85877 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 7 5.4864 -2.6368 0.0001 12 6 6.1603 -3.8040 -0.0003 13 8 5.5538 -4.8543 -0.0002 14 6 7.6673 -3.8040 -0.0008 15 1 8.1379 -3.3487 0.8706 16 6 8.3751 -5.0004 -0.6428 17 6 8.3706 -3.6468 -1.3433 18 6 9.6578 -2.8159 -1.4758 19 6 9.8368 -2.7328 -3.0080 20 6 8.4439 -2.8917 -3.5804 21 6 7.9539 -2.5978 -4.8417 22 6 6.6267 -2.8299 -5.1443 23 6 5.7832 -3.3589 -4.1849 24 6 6.2693 -3.6531 -2.9265 25 6 7.5997 -3.4200 -2.6196 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6798 0.8895 28 1 3.8746 -0.6809 -0.8904 29 1 3.6578 -3.1507 -0.8897 30 1 3.6583 -3.1503 0.8903 31 1 5.9715 -1.7967 0.0005 32 1 7.7507 -5.7880 -1.0645 33 1 9.3114 -5.3319 -0.1937 34 1 9.5248 -1.8230 -1.0462 35 1 10.5008 -3.3299 -1.0139 36 1 10.2525 -1.7650 -3.2880 37 1 10.4830 -3.5382 -3.3572 38 1 8.6121 -2.1844 -5.5915 39 1 6.2482 -2.5990 -6.1290 40 1 4.7449 -3.5415 -4.4197 41 1 5.6092 -4.0658 -2.1780 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273070890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = 3.665373 kcal Electronic energy + Delta-G solvation = -22217.074886 eV Core-core repulsion = 19061.845398 eV Total energy + Delta-G solvation = -3155.229488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90945 -39.00974 -36.97506 -34.96737 -33.83749 -32.76145 -30.66231 -30.17277 -28.96030 -25.81782 -24.95442 -23.22843 -22.72809 -21.12581 -20.78075 -20.06363 -19.39338 -17.13330 -16.86138 -16.12348 -15.75141 -15.31982 -15.09394 -14.97668 -14.39802 -14.20803 -13.98526 -13.61343 -13.18025 -12.98468 -12.76524 -12.60141 -12.48885 -12.19286 -11.84955 -11.76678 -11.49268 -11.21272 -11.16544 -10.82251 -10.56717 -10.47355 -10.38589 -10.14245 -9.96383 -9.50123 -9.29100 -8.76078 -8.63874 -8.52029 -8.42501 -6.11187 -4.11099 1.29445 1.42295 2.81824 3.25345 3.33008 3.34309 3.39206 3.62483 3.94746 4.22978 4.35964 4.37842 4.45120 4.70868 4.79298 5.06758 5.07602 5.19596 5.20671 5.22057 5.27158 5.40609 5.49213 5.58664 5.61453 5.68290 5.79781 5.86084 5.97456 6.00153 6.12272 6.15856 6.20174 6.47305 6.55163 6.60653 6.64801 6.76867 7.02304 7.14191 7.23513 7.66743 7.91612 8.43335 8.57084 8.93083 9.49236 11.01892 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.004708 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.144903 B = 5945.848014 C = 6547.888939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.075 0.925 9 C -0.021 4.021 10 C 0.131 3.869 11 N -0.719 5.719 12 C 0.539 3.461 13 O -0.546 6.546 14 C -0.173 4.173 15 H 0.131 0.869 16 C -0.125 4.125 17 C -0.072 4.072 18 C -0.084 4.084 19 C -0.077 4.077 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.098 4.098 25 C -0.066 4.066 26 H 0.265 0.735 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.397 0.603 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.512 -4.734 -6.372 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.008 3.992 11 N -0.368 5.368 12 C 0.324 3.676 13 O -0.425 6.425 14 C -0.194 4.194 15 H 0.149 0.851 16 C -0.162 4.162 17 C -0.072 4.072 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.095 4.095 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.115 4.115 25 C -0.067 4.067 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.230 0.770 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 21.877 -5.357 -6.368 23.407 hybrid contribution 0.358 1.430 0.038 1.475 sum 22.235 -3.926 -6.330 23.450 Atomic orbital electron populations 1.69902 1.06275 1.27028 1.50478 1.24982 0.94737 0.99084 0.94363 0.86774 0.80289 0.83630 0.78535 1.20222 1.21258 1.19093 1.20911 0.88633 0.94857 1.51616 0.90648 1.19782 0.97967 0.91324 0.96824 1.21508 0.76007 1.00169 1.01475 1.46290 1.08999 1.07884 1.73629 1.19469 0.87866 0.84162 0.76058 1.90696 1.69843 1.31472 1.50454 1.22341 0.93014 1.06150 0.97938 0.85145 1.23000 1.01711 0.90796 1.00673 1.20409 0.96624 1.00601 0.89580 1.21858 0.94654 0.99715 0.95912 1.21008 0.93590 1.02320 0.94446 1.20478 0.95842 0.99351 0.93845 1.20533 0.95617 1.01495 0.95515 1.21061 0.93491 0.99466 0.99440 1.21106 1.00025 0.99047 0.93095 1.20963 0.94462 0.98922 0.97196 1.19583 0.93312 0.99882 0.93875 0.92562 0.96046 0.96441 0.92089 0.91939 0.76986 0.87525 0.87506 0.90154 0.90221 0.90589 0.90188 0.86437 0.85919 0.85625 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.13 2.68 5.61 -4.04 -0.02 2.66 16 11 N -0.72 -12.08 5.44 -60.29 -0.33 -12.41 16 12 C 0.54 8.89 4.74 -10.99 -0.05 8.84 16 13 O -0.55 -10.99 15.93 5.56 0.09 -10.90 16 14 C -0.17 -2.12 6.05 -92.03 -0.56 -2.68 16 15 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.12 -1.37 9.78 -26.97 -0.26 -1.64 16 17 C -0.07 -0.81 2.34 -155.81 -0.36 -1.17 16 18 C -0.08 -0.70 6.85 -25.55 -0.17 -0.88 16 19 C -0.08 -0.66 6.77 -26.75 -0.18 -0.84 16 20 C -0.10 -1.12 6.14 -104.13 -0.64 -1.76 16 21 C -0.11 -1.29 10.03 -39.55 -0.40 -1.69 16 22 C -0.12 -1.41 10.05 -39.63 -0.40 -1.81 16 23 C -0.11 -1.61 10.04 -39.63 -0.40 -2.01 16 24 C -0.10 -1.49 9.20 -39.54 -0.36 -1.86 16 25 C -0.07 -0.89 5.79 -104.41 -0.61 -1.50 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 28 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.40 5.84 8.47 -40.82 -0.35 5.50 16 32 H 0.11 1.38 7.95 -51.93 -0.41 0.96 16 33 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.13 2.22 5.29 -52.49 -0.28 1.94 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -32.65 338.29 -10.04 -42.69 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.04 Total: 5.61 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -4.96 Total: -20.01 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.45 Total: -39.05 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.65 -10.04 -42.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.355 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds