Wall clock time and date at job start Tue Mar 31 2020 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00428 * 2 1 4 4 H 1.48502 * 109.46823 * 270.00297 * 3 2 1 5 5 H 1.48501 * 109.46865 * 29.99921 * 3 2 1 6 6 H 1.48498 * 109.47345 * 149.99924 * 3 2 1 7 7 C 1.37878 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00165 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99939 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47324 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47497 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00346 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99719 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99903 * 179.97438 * 12 11 10 15 15 H 1.08998 * 115.56025 * 62.41248 * 14 12 11 16 16 C 1.53121 * 117.54320 * 208.19816 * 14 12 11 17 17 C 1.52368 * 117.51251 * 276.67126 * 14 12 11 18 18 C 1.53780 * 121.20534 * 141.99499 * 17 14 12 19 19 C 1.54476 * 102.21170 * 189.99706 * 18 17 14 20 20 C 1.51425 * 105.23181 * 25.72136 * 19 18 17 21 21 C 1.38469 * 130.35954 * 163.16539 * 20 19 18 22 22 C 1.38095 * 120.26769 * 179.97438 * 21 20 19 23 23 C 1.38261 * 119.90807 * 359.94442 * 22 21 20 24 24 C 1.38078 * 119.94041 * 0.03857 * 23 22 21 25 25 C 1.38384 * 109.80286 * 343.14372 * 20 19 18 26 26 H 0.97002 * 120.00100 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46730 * 60.00314 * 9 7 2 28 28 H 1.08994 * 109.47765 * 300.00647 * 9 7 2 29 29 H 1.09006 * 109.47026 * 60.00415 * 10 9 7 30 30 H 1.09002 * 109.47148 * 300.00563 * 10 9 7 31 31 H 0.97001 * 119.99966 * 0.02562 * 11 10 9 32 32 H 1.08997 * 117.51659 * 359.97438 * 16 14 12 33 33 H 1.09004 * 117.51403 * 214.87099 * 16 14 12 34 34 H 1.09003 * 110.85632 * 308.18263 * 18 17 14 35 35 H 1.09001 * 110.85309 * 71.81507 * 18 17 14 36 36 H 1.08996 * 110.28987 * 144.66384 * 19 18 17 37 37 H 1.09004 * 110.29022 * 266.78918 * 19 18 17 38 38 H 1.07999 * 119.86684 * 359.90391 * 21 20 19 39 39 H 1.07996 * 120.04702 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.02338 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.85877 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 7 5.4864 -2.6368 0.0001 12 6 6.1603 -3.8040 -0.0003 13 8 5.5538 -4.8543 -0.0002 14 6 7.6673 -3.8040 -0.0008 15 1 8.1379 -3.3487 0.8706 16 6 8.3751 -5.0004 -0.6428 17 6 8.3706 -3.6468 -1.3433 18 6 9.6578 -2.8159 -1.4758 19 6 9.8368 -2.7328 -3.0080 20 6 8.4439 -2.8917 -3.5804 21 6 7.9539 -2.5978 -4.8417 22 6 6.6267 -2.8299 -5.1443 23 6 5.7832 -3.3589 -4.1849 24 6 6.2693 -3.6531 -2.9265 25 6 7.5997 -3.4200 -2.6196 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6798 0.8895 28 1 3.8746 -0.6809 -0.8904 29 1 3.6578 -3.1507 -0.8897 30 1 3.6583 -3.1503 0.8903 31 1 5.9715 -1.7967 0.0005 32 1 7.7507 -5.7880 -1.0645 33 1 9.3114 -5.3319 -0.1937 34 1 9.5248 -1.8230 -1.0462 35 1 10.5008 -3.3299 -1.0139 36 1 10.2525 -1.7650 -3.2880 37 1 10.4830 -3.5382 -3.3572 38 1 8.6121 -2.1844 -5.5915 39 1 6.2482 -2.5990 -6.1290 40 1 4.7449 -3.5415 -4.4197 41 1 5.6092 -4.0658 -2.1780 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273070890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:25 Heat of formation + Delta-G solvation = -16.372685 kcal Electronic energy + Delta-G solvation = -22217.943801 eV Core-core repulsion = 19061.845398 eV Total energy + Delta-G solvation = -3156.098403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.89902 -40.24537 -37.96547 -36.63897 -34.83386 -34.66917 -32.06587 -31.61171 -29.78840 -27.45968 -25.90764 -24.57920 -23.62871 -22.61517 -22.02609 -21.19564 -20.44802 -19.03623 -18.28549 -17.08696 -16.84017 -16.69032 -16.29484 -16.22094 -15.78151 -15.63477 -15.24271 -14.80627 -14.58791 -14.48013 -14.05235 -13.71280 -13.39984 -13.29453 -13.09529 -13.06428 -12.61225 -12.50521 -12.28673 -12.21355 -12.03838 -11.80305 -11.67581 -11.56596 -11.36225 -11.25723 -10.82254 -10.81781 -10.09110 -9.73609 -9.34403 -8.33334 -6.40650 0.33352 0.43465 1.35545 1.37858 1.49270 1.55623 2.16837 2.33469 2.60538 3.00654 3.01576 3.38714 3.51208 3.59363 3.85723 3.92445 4.13723 4.15708 4.16553 4.33491 4.36333 4.41228 4.55159 4.62755 4.65816 4.68940 4.79334 4.83685 4.95882 5.04214 5.10560 5.13568 5.17561 5.27176 5.32371 5.34718 5.38506 5.53288 5.60171 5.62158 5.68133 6.08083 6.18517 6.56713 6.67287 7.23251 7.25168 8.83581 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.004708 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.144903 B = 5945.848014 C = 6547.888939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.238 1.238 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.009 4.009 10 C 0.148 3.852 11 N -0.710 5.710 12 C 0.537 3.463 13 O -0.592 6.592 14 C -0.180 4.180 15 H 0.166 0.834 16 C -0.121 4.121 17 C -0.065 4.065 18 C -0.076 4.076 19 C -0.074 4.074 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.141 4.141 24 C -0.126 4.126 25 C -0.087 4.087 26 H 0.269 0.731 27 H 0.037 0.963 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.411 0.589 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.611 -2.506 -6.645 28.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.578 4.578 8 H 0.046 0.954 9 C -0.047 4.047 10 C 0.024 3.976 11 N -0.360 5.360 12 C 0.325 3.675 13 O -0.473 6.473 14 C -0.200 4.200 15 H 0.183 0.817 16 C -0.158 4.158 17 C -0.066 4.066 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.095 4.095 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.159 4.159 24 C -0.144 4.144 25 C -0.087 4.087 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.247 0.753 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.134 0.866 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 27.014 -3.132 -6.639 27.994 hybrid contribution -1.334 0.602 0.052 1.464 sum 25.681 -2.531 -6.587 26.633 Atomic orbital electron populations 1.70068 1.08509 1.28462 1.51841 1.26037 0.95663 1.03705 0.93574 0.85578 0.79714 0.77548 0.79311 1.19138 1.20867 1.16125 1.21219 0.91440 0.93367 1.51738 0.95393 1.19608 0.94547 0.92762 0.97768 1.20983 0.78703 0.98411 0.99534 1.46038 1.07132 1.09075 1.73798 1.20293 0.89990 0.82971 0.74230 1.90670 1.71375 1.33049 1.52225 1.22365 0.89322 1.08146 1.00200 0.81707 1.23108 1.02436 0.89950 1.00288 1.20633 0.97382 1.00891 0.87654 1.21973 0.93496 0.99869 0.95990 1.21134 0.91466 1.04101 0.94367 1.20992 0.97404 0.97667 0.93448 1.20948 0.95477 1.00475 0.96276 1.21336 0.93922 0.98666 0.99744 1.21195 1.00301 1.00711 0.93728 1.20856 0.95562 1.00891 0.97082 1.19912 0.92714 1.00161 0.95914 0.92249 0.94476 0.95218 0.94434 0.93809 0.75312 0.90534 0.83623 0.89165 0.87207 0.88487 0.88519 0.83265 0.83794 0.86618 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 2 C 0.01 0.44 5.47 84.66 0.46 0.91 16 3 Si 0.96 43.20 27.47 68.60 1.88 45.08 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 7 C -0.54 -31.59 9.66 25.60 0.25 -31.35 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.42 4.16 29.85 0.12 -0.30 16 10 C 0.15 6.38 5.61 86.38 0.48 6.87 16 11 N -0.71 -24.11 5.44 -463.06 -2.52 -26.63 16 12 C 0.54 18.05 4.74 87.66 0.42 18.47 16 13 O -0.59 -25.32 15.93 -3.03 -0.05 -25.37 16 14 C -0.18 -4.03 6.05 -11.71 -0.07 -4.10 16 15 H 0.17 2.56 8.14 -2.39 -0.02 2.54 16 16 C -0.12 -2.41 9.78 30.44 0.30 -2.11 16 17 C -0.07 -1.28 2.34 -53.03 -0.12 -1.41 16 18 C -0.08 -0.87 6.85 31.36 0.21 -0.65 16 19 C -0.07 -0.90 6.77 30.58 0.21 -0.69 16 20 C -0.10 -1.96 6.14 -19.54 -0.12 -2.08 16 21 C -0.11 -2.28 10.03 22.29 0.22 -2.06 16 22 C -0.12 -2.78 10.05 22.24 0.22 -2.55 16 23 C -0.14 -4.20 10.04 22.24 0.22 -3.98 16 24 C -0.13 -4.06 9.20 22.29 0.21 -3.85 16 25 C -0.09 -2.24 5.79 -19.73 -0.11 -2.36 16 26 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 27 H 0.04 1.62 7.20 -2.38 -0.02 1.60 16 28 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 29 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.41 11.52 8.47 -92.71 -0.79 10.74 16 32 H 0.08 2.01 7.95 -2.39 -0.02 1.99 16 33 H 0.15 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.66 8.12 -2.39 -0.02 0.64 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.09 3.56 5.29 -2.91 -0.02 3.54 16 Total: -1.00 -77.01 338.29 2.71 -74.30 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.19 Total: 23.47 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 2.90 Total: -31.25 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -2.22 Total: -86.23 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.05 Total: -25.37 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal Total: -77.01 2.71 -74.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.929 kcal (2) G-P(sol) polarization free energy of solvation -77.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds