Wall clock time and date at job start Tue Mar 31 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47735 * 2 1 4 4 C 1.50701 * 109.47333 * 120.00700 * 2 1 3 5 5 N 1.30838 * 125.88331 * 300.03667 * 4 2 1 6 6 N 1.40087 * 108.23315 * 179.97438 * 5 4 2 7 7 C 1.46497 * 126.03507 * 180.02562 * 6 5 4 8 8 C 1.34977 * 107.92683 * 359.77236 * 6 5 4 9 9 Cl 1.73605 * 126.14274 * 180.22751 * 8 6 5 10 10 C 1.35458 * 107.71927 * 0.36606 * 8 6 5 11 11 C 1.50704 * 126.05354 * 179.89574 * 10 8 6 12 12 N 1.46898 * 109.47041 * 269.69158 * 11 10 8 13 13 C 1.46906 * 110.99888 * 179.97438 * 12 11 10 14 14 C 1.52993 * 109.47378 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47429 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99822 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47112 * 90.00199 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00310 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99931 * 19 17 15 23 23 H 1.09007 * 109.46743 * 300.00026 * 1 2 3 24 24 H 1.09000 * 109.46903 * 59.99094 * 1 2 3 25 25 H 1.08992 * 109.47464 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46743 * 239.99974 * 2 1 3 27 27 H 1.09007 * 109.46569 * 59.99874 * 3 2 1 28 28 H 1.08999 * 109.47667 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47199 * 300.00698 * 3 2 1 30 30 H 1.08993 * 109.47459 * 90.02081 * 7 6 5 31 31 H 1.09003 * 109.46969 * 210.02627 * 7 6 5 32 32 H 1.09006 * 109.47153 * 330.02017 * 7 6 5 33 33 H 1.08997 * 109.46924 * 149.69069 * 11 10 8 34 34 H 1.08995 * 109.46962 * 29.69223 * 11 10 8 35 35 H 1.00904 * 110.99913 * 303.95016 * 12 11 10 36 36 H 1.09004 * 109.47040 * 299.99934 * 13 12 11 37 37 H 1.09000 * 109.47033 * 59.99886 * 13 12 11 38 38 H 1.09004 * 109.46862 * 299.99897 * 14 13 12 39 39 H 1.09004 * 109.46998 * 59.99419 * 14 13 12 40 40 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 7 1.7877 -0.3659 2.4686 6 7 2.4327 -1.2786 3.3132 7 6 2.4162 -1.2576 4.7779 8 6 3.0674 -2.1841 2.5391 9 17 4.0095 -3.5300 3.1004 10 6 2.8399 -1.8523 1.2456 11 6 3.3596 -2.5872 0.0369 12 7 4.6592 -2.0262 -0.3559 13 6 5.1978 -2.7201 -1.5334 14 6 6.5490 -2.1099 -1.9112 15 6 7.1019 -2.8221 -3.1187 16 1 6.5450 -3.6290 -3.5716 17 6 8.3181 -2.4429 -3.6459 18 7 8.9960 -1.4600 -3.0946 19 14 9.0031 -3.3252 -5.1431 20 1 8.5364 -2.6426 -6.3765 21 1 10.4872 -3.3016 -5.0956 22 1 8.5305 -4.7330 -5.1473 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.6767 1.9563 0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.5736 -1.8463 5.1403 31 1 3.3458 -1.6815 5.1579 32 1 2.3172 -0.2292 5.1255 33 1 2.6531 -2.4783 -0.7860 34 1 3.4776 -3.6438 0.2770 35 1 4.5892 -1.0333 -0.5215 36 1 5.3287 -3.7776 -1.3037 37 1 4.5043 -2.6125 -2.3674 38 1 6.4186 -1.0523 -2.1408 39 1 7.2423 -2.2178 -1.0770 40 1 9.8519 -1.1934 -3.4651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273078380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:19 Heat of formation + Delta-G solvation = 49.757938 kcal Electronic energy + Delta-G solvation = -20238.250812 eV Core-core repulsion = 17114.879949 eV Total energy + Delta-G solvation = -3123.370863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.47185 -36.91424 -36.27838 -35.50555 -33.18234 -32.41646 -30.75859 -28.83418 -27.18313 -27.06781 -24.81742 -23.13035 -22.57234 -20.70367 -20.30118 -19.15713 -17.00178 -16.27383 -15.86286 -15.53347 -14.83085 -14.69961 -14.36748 -13.98001 -13.80571 -13.62771 -13.40612 -12.92143 -12.77513 -12.29117 -12.26728 -12.17960 -11.99723 -11.83543 -11.57654 -11.28234 -11.18756 -11.04833 -10.91773 -10.89285 -10.51698 -10.37913 -9.93060 -9.37629 -9.19011 -9.12043 -8.44080 -8.30522 -7.68472 -5.95358 -3.97661 1.45755 1.60214 2.54573 2.55806 3.34805 3.40982 3.44450 4.21354 4.48486 4.63048 4.83682 4.90310 4.99624 5.11775 5.15283 5.18179 5.29225 5.40528 5.40942 5.56193 5.60104 5.78070 5.81144 5.90597 5.96342 6.09976 6.18890 6.23639 6.41298 6.47821 6.52311 6.63656 7.05086 7.51299 7.56249 7.79739 7.89355 8.03896 8.15588 8.49029 9.09937 9.65857 11.16084 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.003867 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.084586 B = 7238.903290 C = 8228.917459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.017 4.017 3 C -0.143 4.143 4 C 0.098 3.902 5 N -0.273 5.273 6 N -0.373 5.373 7 C 0.100 3.900 8 C 0.138 3.862 9 Cl 0.000 7.000 10 C -0.198 4.198 11 C 0.133 3.867 12 N -0.684 5.684 13 C 0.067 3.933 14 C 0.026 3.974 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.335 0.665 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.025 0.975 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 1.368 13.680 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.037 4.037 3 C -0.201 4.201 4 C -0.069 4.069 5 N -0.096 5.096 6 N -0.157 5.157 7 C -0.042 4.042 8 C -0.015 4.015 9 Cl 0.028 6.972 10 C -0.211 4.211 11 C 0.003 3.997 12 N -0.315 5.315 13 C -0.061 4.061 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.148 1.763 15.118 22.928 hybrid contribution 0.499 -0.861 -1.706 1.975 sum -16.649 0.903 13.412 21.398 Atomic orbital electron populations 1.21804 0.93835 1.02014 1.02236 1.19659 0.95983 0.95883 0.92161 1.21816 1.01804 0.94333 1.02135 1.22067 0.96726 0.94530 0.93554 1.77390 1.19307 1.12450 1.00406 1.48448 1.39886 1.20692 1.06678 1.21891 1.03568 1.04798 0.73909 1.21400 0.98074 0.90953 0.91089 1.98411 1.69372 1.39977 1.89393 1.19633 1.07353 1.01021 0.93079 1.20170 0.90336 0.97728 0.91477 1.60618 1.23473 1.07896 1.39499 1.22159 0.97954 0.98156 0.87873 1.19056 0.90153 0.95712 0.96236 1.21190 1.04180 1.17774 1.12749 0.92762 1.24995 0.96953 0.95178 0.97211 1.69975 1.14332 1.28267 1.40719 0.86607 0.78125 0.80122 0.83215 1.20730 1.21251 1.19885 0.92171 0.91937 0.92650 0.89132 0.92229 0.92020 0.91910 0.90596 0.89377 0.88850 0.94728 0.90636 0.84722 0.92347 0.96668 0.96853 0.95687 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 2 C -0.02 -0.19 3.30 -91.77 -0.30 -0.49 16 3 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 4 C 0.10 1.34 5.72 -82.41 -0.47 0.87 16 5 N -0.27 -3.79 12.57 33.67 0.42 -3.36 16 6 N -0.37 -4.73 4.01 -64.91 -0.26 -4.99 16 7 C 0.10 0.81 11.31 59.85 0.68 1.49 16 8 C 0.14 1.92 7.45 -17.16 -0.13 1.80 16 9 Cl 0.00 0.01 28.34 -51.86 -1.47 -1.46 16 10 C -0.20 -2.91 5.62 -105.01 -0.59 -3.50 16 11 C 0.13 2.04 5.66 -4.97 -0.03 2.02 16 12 N -0.68 -12.53 6.49 -115.06 -0.75 -13.28 16 13 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 14 C 0.03 0.68 5.23 -27.89 -0.15 0.54 16 15 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 19 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 1.05 6.90 -51.92 -0.36 0.69 16 27 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.62 7.81 -51.93 -0.41 0.21 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.50 7.23 -51.93 -0.38 0.12 16 34 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 35 H 0.34 6.07 8.72 -39.29 -0.34 5.73 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -31.93 350.72 -8.30 -40.23 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.51 Total: -0.99 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.74 Total: -11.75 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.15 Total: -48.09 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.47 Total: -1.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.93 -8.30 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273078380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.988 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds