Wall clock time and date at job start Tue Mar 31 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47735 * 2 1 4 4 C 1.50701 * 109.47333 * 120.00700 * 2 1 3 5 5 N 1.30838 * 125.88331 * 300.03667 * 4 2 1 6 6 N 1.40087 * 108.23315 * 179.97438 * 5 4 2 7 7 C 1.46497 * 126.03507 * 180.02562 * 6 5 4 8 8 C 1.34977 * 107.92683 * 359.77236 * 6 5 4 9 9 Cl 1.73605 * 126.14274 * 180.22751 * 8 6 5 10 10 C 1.35458 * 107.71927 * 0.36606 * 8 6 5 11 11 C 1.50704 * 126.05354 * 179.89574 * 10 8 6 12 12 N 1.46898 * 109.47041 * 269.69158 * 11 10 8 13 13 C 1.46906 * 110.99888 * 179.97438 * 12 11 10 14 14 C 1.52993 * 109.47378 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47429 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99822 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47112 * 90.00199 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00310 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99931 * 19 17 15 23 23 H 1.09007 * 109.46743 * 300.00026 * 1 2 3 24 24 H 1.09000 * 109.46903 * 59.99094 * 1 2 3 25 25 H 1.08992 * 109.47464 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46743 * 239.99974 * 2 1 3 27 27 H 1.09007 * 109.46569 * 59.99874 * 3 2 1 28 28 H 1.08999 * 109.47667 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47199 * 300.00698 * 3 2 1 30 30 H 1.08993 * 109.47459 * 90.02081 * 7 6 5 31 31 H 1.09003 * 109.46969 * 210.02627 * 7 6 5 32 32 H 1.09006 * 109.47153 * 330.02017 * 7 6 5 33 33 H 1.08997 * 109.46924 * 149.69069 * 11 10 8 34 34 H 1.08995 * 109.46962 * 29.69223 * 11 10 8 35 35 H 1.00904 * 110.99913 * 303.95016 * 12 11 10 36 36 H 1.09004 * 109.47040 * 299.99934 * 13 12 11 37 37 H 1.09000 * 109.47033 * 59.99886 * 13 12 11 38 38 H 1.09004 * 109.46862 * 299.99897 * 14 13 12 39 39 H 1.09004 * 109.46998 * 59.99419 * 14 13 12 40 40 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 7 1.7877 -0.3659 2.4686 6 7 2.4327 -1.2786 3.3132 7 6 2.4162 -1.2576 4.7779 8 6 3.0674 -2.1841 2.5391 9 17 4.0095 -3.5300 3.1004 10 6 2.8399 -1.8523 1.2456 11 6 3.3596 -2.5872 0.0369 12 7 4.6592 -2.0262 -0.3559 13 6 5.1978 -2.7201 -1.5334 14 6 6.5490 -2.1099 -1.9112 15 6 7.1019 -2.8221 -3.1187 16 1 6.5450 -3.6290 -3.5716 17 6 8.3181 -2.4429 -3.6459 18 7 8.9960 -1.4600 -3.0946 19 14 9.0031 -3.3252 -5.1431 20 1 8.5364 -2.6426 -6.3765 21 1 10.4872 -3.3016 -5.0956 22 1 8.5305 -4.7330 -5.1473 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.6767 1.9563 0.8901 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.5736 -1.8463 5.1403 31 1 3.3458 -1.6815 5.1579 32 1 2.3172 -0.2292 5.1255 33 1 2.6531 -2.4783 -0.7860 34 1 3.4776 -3.6438 0.2770 35 1 4.5892 -1.0333 -0.5215 36 1 5.3287 -3.7776 -1.3037 37 1 4.5043 -2.6125 -2.3674 38 1 6.4186 -1.0523 -2.1408 39 1 7.2423 -2.2178 -1.0770 40 1 9.8519 -1.1934 -3.4651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273078380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:19 Heat of formation + Delta-G solvation = 29.625572 kcal Electronic energy + Delta-G solvation = -20239.123816 eV Core-core repulsion = 17114.879949 eV Total energy + Delta-G solvation = -3124.243868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48556 -37.93855 -37.64296 -36.61292 -35.08570 -33.54949 -32.19477 -30.37411 -28.15911 -27.99674 -26.41522 -24.66168 -23.52910 -22.40597 -21.56629 -20.13315 -18.47016 -17.95525 -16.91483 -16.80126 -16.45708 -15.87169 -15.61968 -15.36926 -15.04777 -14.71539 -14.35325 -14.13131 -13.99727 -13.70955 -13.56893 -13.29387 -13.11362 -12.96689 -12.81010 -12.74819 -12.48278 -12.41360 -12.27973 -12.04610 -11.98189 -11.78299 -11.45633 -11.34294 -11.22763 -10.52791 -10.16396 -9.56151 -9.14233 -8.16588 -6.27796 0.42560 0.56992 1.42635 1.44329 1.48799 1.55496 1.66459 2.43734 3.17017 3.29121 3.59652 3.74201 4.04517 4.08307 4.23407 4.25840 4.32717 4.47879 4.54612 4.59014 4.61763 4.66305 4.75123 4.82679 4.90717 4.98071 5.04063 5.13581 5.14892 5.31743 5.37431 5.49220 5.51133 5.71791 5.73204 5.83124 6.19044 6.33410 6.49100 6.58621 6.90073 7.41415 8.95606 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.003867 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.084586 B = 7238.903290 C = 8228.917459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.019 4.019 3 C -0.139 4.139 4 C 0.094 3.906 5 N -0.286 5.286 6 N -0.371 5.371 7 C 0.088 3.912 8 C 0.133 3.867 9 Cl 0.007 6.993 10 C -0.221 4.221 11 C 0.140 3.860 12 N -0.689 5.689 13 C 0.086 3.914 14 C 0.033 3.967 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.262 1.262 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.336 0.664 36 H 0.058 0.942 37 H 0.024 0.976 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.273 0.747 13.386 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.039 4.039 3 C -0.196 4.196 4 C -0.072 4.072 5 N -0.109 5.109 6 N -0.155 5.155 7 C -0.051 4.051 8 C -0.022 4.022 9 Cl 0.036 6.964 10 C -0.234 4.234 11 C 0.011 3.989 12 N -0.320 5.320 13 C -0.043 4.043 14 C -0.004 4.004 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.187 1.187 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.153 0.847 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.267 1.142 14.851 23.570 hybrid contribution 0.829 -0.644 -1.495 1.827 sum -17.438 0.498 13.356 21.971 Atomic orbital electron populations 1.21752 0.92347 1.02156 1.02934 1.19756 0.97187 0.95774 0.91191 1.21779 1.00645 0.94300 1.02923 1.22362 0.96395 0.94268 0.94189 1.77350 1.19901 1.13021 1.00646 1.48811 1.38857 1.19791 1.08022 1.22269 1.05078 1.06209 0.71550 1.21539 0.98007 0.91291 0.91367 1.98410 1.69166 1.39587 1.89284 1.19639 1.08657 1.01992 0.93102 1.20099 0.88939 0.97544 0.92328 1.60527 1.25728 1.07820 1.37961 1.21772 0.95482 0.97746 0.89274 1.18902 0.92285 0.94647 0.94606 1.21629 1.04753 1.18148 1.13500 0.91983 1.25963 0.97315 0.95883 1.00545 1.70116 1.14833 1.29856 1.42517 0.85440 0.77245 0.79246 0.79061 1.19679 1.20915 1.18656 0.92515 0.90157 0.92774 0.89362 0.92393 0.93733 0.90146 0.88593 0.88267 0.87620 0.93459 0.90690 0.84701 0.92327 0.95818 0.99113 0.99039 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.18 71.98 0.66 -1.75 16 2 C -0.02 -0.41 3.30 -11.54 -0.04 -0.45 16 3 C -0.14 -2.93 9.18 71.98 0.66 -2.27 16 4 C 0.09 2.50 5.72 43.10 0.25 2.75 16 5 N -0.29 -7.67 12.57 -47.39 -0.60 -8.26 16 6 N -0.37 -8.97 4.01 -359.27 -1.44 -10.42 16 7 C 0.09 1.29 11.31 127.77 1.44 2.73 16 8 C 0.13 3.58 7.45 83.57 0.62 4.21 16 9 Cl 0.01 0.18 28.34 -2.72 -0.08 0.11 16 10 C -0.22 -6.34 5.62 -20.11 -0.11 -6.46 16 11 C 0.14 4.22 5.66 85.56 0.48 4.70 16 12 N -0.69 -25.28 6.49 -517.93 -3.36 -28.64 16 13 C 0.09 3.64 5.62 86.30 0.49 4.12 16 14 C 0.03 1.79 5.23 29.84 0.16 1.94 16 15 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.00 0.04 5.46 84.65 0.46 0.50 16 18 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 19 Si 0.97 44.49 29.54 68.60 2.03 46.51 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 23 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 1.97 6.90 -2.38 -0.02 1.95 16 27 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.23 7.81 -2.39 -0.02 1.21 16 32 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.05 1.31 7.23 -2.39 -0.02 1.29 16 34 H 0.07 2.25 7.90 -2.39 -0.02 2.23 16 35 H 0.34 12.30 8.72 -89.69 -0.78 11.52 16 36 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -68.19 350.72 2.38 -65.81 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.24 Total: 13.09 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 5.31 Total: -20.86 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -5.11 Total: -104.66 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -0.08 Total: 0.11 kcal Total: -68.19 2.38 -65.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273078380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.435 kcal (2) G-P(sol) polarization free energy of solvation -68.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds