Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00399 * 2 1 4 4 H 1.48499 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47120 * 300.00110 * 3 2 1 6 6 H 1.48504 * 109.47156 * 59.99601 * 3 2 1 7 7 C 1.38816 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99674 * 201.59334 * 7 2 1 9 9 N 1.36939 * 119.99839 * 21.59282 * 7 2 1 10 10 C 1.46494 * 120.00183 * 36.74681 * 9 7 2 11 11 C 1.50709 * 109.47398 * 89.99542 * 10 9 7 12 12 C 1.38744 * 119.78779 * 89.99924 * 11 10 9 13 13 C 1.37852 * 120.68169 * 180.02562 * 12 11 10 14 14 C 1.38940 * 119.81866 * 359.97438 * 13 12 11 15 15 O 1.34804 * 133.49425 * 179.97438 * 14 13 12 16 16 C 1.34449 * 110.88842 * 180.02562 * 15 14 13 17 17 C 1.33991 * 110.15555 * 0.02562 * 16 15 14 18 18 C 1.40489 * 119.22331 * 0.02562 * 14 13 12 19 19 C 1.36733 * 119.79091 * 270.02198 * 11 10 9 20 20 C 1.46494 * 119.99749 * 216.74084 * 9 7 2 21 21 C 1.54265 * 110.03299 * 62.53336 * 20 9 7 22 22 C 1.54970 * 104.15961 * 217.13662 * 21 20 9 23 23 C 1.54882 * 102.77860 * 37.88240 * 22 21 20 24 24 C 1.53878 * 110.03658 * 305.31049 * 20 9 7 25 25 H 0.97002 * 119.99725 * 354.92401 * 1 2 3 26 26 H 1.09004 * 109.47575 * 329.99824 * 10 9 7 27 27 H 1.08999 * 109.47572 * 209.99770 * 10 9 7 28 28 H 1.07996 * 119.66166 * 0.02562 * 12 11 10 29 29 H 1.07995 * 120.08559 * 180.02562 * 13 12 11 30 30 H 1.08001 * 124.92417 * 180.02562 * 16 15 14 31 31 H 1.07999 * 126.90927 * 180.26340 * 17 16 15 32 32 H 1.07997 * 120.14666 * 0.02562 * 19 11 10 33 33 H 1.09004 * 110.01756 * 183.92065 * 20 9 7 34 34 H 1.09007 * 110.48681 * 335.78002 * 21 20 9 35 35 H 1.08992 * 110.48949 * 98.42567 * 21 20 9 36 36 H 1.09001 * 110.71496 * 279.56793 * 22 21 20 37 37 H 1.08997 * 110.92091 * 156.29579 * 22 21 20 38 38 H 1.08999 * 110.48756 * 203.40328 * 23 22 21 39 39 H 1.09003 * 110.59856 * 80.82087 * 23 22 21 40 40 H 1.08997 * 110.03598 * 238.56573 * 24 20 9 41 41 H 1.09005 * 110.02771 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0333 -1.2349 0.3447 9 7 1.3975 -2.3467 -0.4354 10 6 0.4622 -2.2934 -1.5617 11 6 1.2146 -2.5060 -2.8501 12 6 1.3805 -3.7905 -3.3475 13 6 2.0660 -4.0062 -4.5239 14 6 2.5970 -2.9285 -5.2216 15 8 3.2982 -2.8199 -6.3678 16 6 3.5900 -1.5342 -6.6314 17 6 3.0945 -0.7421 -5.6710 18 6 2.4256 -1.6303 -4.7127 19 6 1.7298 -1.4318 -3.5211 20 6 1.6774 -3.6243 0.2245 21 6 1.2262 -3.5677 1.6986 22 6 2.3074 -4.3783 2.4573 23 6 3.6111 -3.9853 1.7192 24 6 3.1930 -3.8901 0.2373 25 1 -0.4850 0.8368 0.0743 26 1 -0.0262 -1.3191 -1.5827 27 1 -0.2896 -3.0742 -1.4469 28 1 0.9685 -4.6301 -2.8074 29 1 2.1891 -5.0101 -4.9025 30 1 4.1435 -1.1897 -7.4924 31 1 3.1680 0.3340 -5.6156 32 1 1.5987 -0.4339 -3.1295 33 1 1.1609 -4.4327 -0.2932 34 1 1.2050 -2.5366 2.0518 35 1 0.2474 -4.0324 1.8162 36 1 2.1204 -5.4484 2.3680 37 1 2.3522 -4.0817 3.5052 38 1 4.3716 -4.7546 1.8524 39 1 3.9777 -3.0223 2.0747 40 1 3.4119 -4.8279 -0.2733 41 1 3.7203 -3.0682 -0.2471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290181851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = 40.668612 kcal Electronic energy + Delta-G solvation = -22790.236865 eV Core-core repulsion = 19636.611958 eV Total energy + Delta-G solvation = -3153.624907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96281 -38.15379 -37.16621 -34.22515 -32.37186 -31.32344 -30.03475 -28.84475 -27.83819 -26.67517 -25.59457 -22.85843 -22.26089 -20.87145 -20.56233 -19.89097 -19.06669 -16.98637 -16.71271 -16.17723 -15.67917 -15.47971 -14.75075 -14.34454 -14.17081 -13.64142 -13.52018 -13.41308 -12.84358 -12.69840 -12.51731 -12.30613 -11.77317 -11.58697 -11.19361 -10.92138 -10.85069 -10.67583 -10.41972 -10.34676 -10.27278 -10.24686 -10.02134 -9.87157 -9.82854 -9.78785 -9.49479 -8.51163 -7.89494 -7.69884 -6.54678 -5.83824 -3.34501 1.42838 1.98235 2.75434 3.17308 3.31413 3.41636 3.44874 4.28985 4.47714 4.86265 5.12871 5.25616 5.39748 5.44516 5.46827 5.47798 5.63072 5.70026 5.79736 5.94004 6.01916 6.13989 6.17554 6.29694 6.31975 6.33323 6.46474 6.53798 6.57289 6.62612 6.65176 6.76449 6.82085 6.87644 6.96412 7.01064 7.18225 7.23766 7.37214 7.39039 7.63583 7.69855 7.86040 8.52684 9.16880 9.80196 10.37824 11.18792 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.006669 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.348122 B = 4197.266048 C = 5402.563449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.013 3.987 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.062 0.938 9 N -0.568 5.568 10 C 0.175 3.825 11 C -0.087 4.087 12 C -0.084 4.084 13 C -0.121 4.121 14 C 0.032 3.968 15 O -0.204 6.204 16 C -0.013 4.013 17 C -0.206 4.206 18 C -0.135 4.135 19 C -0.052 4.052 20 C 0.173 3.827 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.133 4.133 25 H 0.255 0.745 26 H 0.106 0.894 27 H 0.034 0.966 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.200 0.800 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 -5.937 -6.441 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.187 4.187 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.079 0.921 9 N -0.286 5.286 10 C 0.049 3.951 11 C -0.090 4.090 12 C -0.103 4.103 13 C -0.139 4.139 14 C -0.015 4.015 15 O -0.107 6.107 16 C -0.078 4.078 17 C -0.225 4.225 18 C -0.136 4.136 19 C -0.071 4.071 20 C 0.065 3.935 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.172 4.172 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.053 0.947 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.217 0.783 31 H 0.169 0.831 32 H 0.142 0.858 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.683 -6.015 -6.622 9.675 hybrid contribution 0.636 1.170 -0.007 1.332 sum 4.320 -4.844 -6.630 9.278 Atomic orbital electron populations 1.69887 1.05426 1.25830 1.51856 1.25119 0.94967 0.98370 1.00207 0.86448 0.79993 0.84377 0.77421 1.20088 1.21400 1.21687 1.18949 0.94565 0.85071 1.38811 0.92058 1.43886 1.51480 1.02936 1.30318 1.20071 0.90060 1.03503 0.81473 1.20915 0.98966 0.91570 0.97581 1.20885 0.97894 0.97432 0.94080 1.19768 1.02342 0.95676 0.96156 1.19549 0.98825 0.95955 0.87175 1.83915 1.61146 1.28302 1.37310 1.23730 1.02577 0.80580 1.00909 1.22526 1.04079 1.00076 0.95824 1.20018 1.03245 0.92476 0.97887 1.20236 0.95401 1.00039 0.91433 1.21041 0.92495 0.88237 0.91682 1.22821 0.96010 1.01096 0.97027 1.22442 0.96400 0.98890 0.98415 1.22245 0.96588 1.00204 0.96466 1.22557 0.99070 1.00261 0.95348 0.93443 0.87611 0.94720 0.85783 0.86212 0.78338 0.83105 0.85792 0.93445 0.89725 0.93653 0.92908 0.92903 0.93494 0.92019 0.93830 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 11.42 55.49 0.63 -23.33 16 2 C 0.01 0.35 4.96 -17.43 -0.09 0.26 16 3 Si 0.89 20.87 29.61 -169.99 -5.03 15.84 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.18 7.80 -15.06 -0.12 -6.30 16 8 H 0.06 1.61 6.92 -52.49 -0.36 1.24 16 9 N -0.57 -13.01 2.37 -165.75 -0.39 -13.41 16 10 C 0.17 3.87 5.36 -5.19 -0.03 3.84 16 11 C -0.09 -1.75 5.43 -104.97 -0.57 -2.32 16 12 C -0.08 -1.48 9.66 -39.54 -0.38 -1.86 16 13 C -0.12 -2.02 10.07 -39.46 -0.40 -2.42 16 14 C 0.03 0.57 7.42 -38.47 -0.29 0.29 16 15 O -0.20 -3.35 10.58 3.92 0.04 -3.31 16 16 C -0.01 -0.18 11.96 29.24 0.35 0.17 16 17 C -0.21 -3.22 11.14 -37.62 -0.42 -3.64 16 18 C -0.14 -2.57 6.40 -105.16 -0.67 -3.24 16 19 C -0.05 -1.07 9.68 -39.69 -0.38 -1.45 16 20 C 0.17 3.45 3.41 -66.81 -0.23 3.23 16 21 C -0.13 -2.53 6.43 -25.03 -0.16 -2.69 16 22 C -0.12 -2.01 6.91 -24.70 -0.17 -2.18 16 23 C -0.12 -1.96 6.83 -25.08 -0.17 -2.14 16 24 C -0.13 -2.47 6.14 -25.61 -0.16 -2.63 16 25 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 26 H 0.11 2.65 5.40 -51.93 -0.28 2.37 16 27 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 28 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.20 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.12 2.71 8.06 -52.49 -0.42 2.29 16 33 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 34 H 0.08 1.93 7.22 -51.93 -0.38 1.56 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.52 6.70 -51.93 -0.35 1.17 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -27.80 334.37 -9.57 -37.36 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.97 Total: 4.90 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -3.88 Total: -23.09 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.24 Total: -36.74 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.80 -9.57 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290181851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.030 kcal (2) G-P(sol) polarization free energy of solvation -27.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds