Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00399 * 2 1 4 4 H 1.48499 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47120 * 300.00110 * 3 2 1 6 6 H 1.48504 * 109.47156 * 59.99601 * 3 2 1 7 7 C 1.38816 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99674 * 201.59334 * 7 2 1 9 9 N 1.36939 * 119.99839 * 21.59282 * 7 2 1 10 10 C 1.46494 * 120.00183 * 36.74681 * 9 7 2 11 11 C 1.50709 * 109.47398 * 89.99542 * 10 9 7 12 12 C 1.38744 * 119.78779 * 89.99924 * 11 10 9 13 13 C 1.37852 * 120.68169 * 180.02562 * 12 11 10 14 14 C 1.38940 * 119.81866 * 359.97438 * 13 12 11 15 15 O 1.34804 * 133.49425 * 179.97438 * 14 13 12 16 16 C 1.34449 * 110.88842 * 180.02562 * 15 14 13 17 17 C 1.33991 * 110.15555 * 0.02562 * 16 15 14 18 18 C 1.40489 * 119.22331 * 0.02562 * 14 13 12 19 19 C 1.36733 * 119.79091 * 270.02198 * 11 10 9 20 20 C 1.46494 * 119.99749 * 216.74084 * 9 7 2 21 21 C 1.54265 * 110.03299 * 62.53336 * 20 9 7 22 22 C 1.54970 * 104.15961 * 217.13662 * 21 20 9 23 23 C 1.54882 * 102.77860 * 37.88240 * 22 21 20 24 24 C 1.53878 * 110.03658 * 305.31049 * 20 9 7 25 25 H 0.97002 * 119.99725 * 354.92401 * 1 2 3 26 26 H 1.09004 * 109.47575 * 329.99824 * 10 9 7 27 27 H 1.08999 * 109.47572 * 209.99770 * 10 9 7 28 28 H 1.07996 * 119.66166 * 0.02562 * 12 11 10 29 29 H 1.07995 * 120.08559 * 180.02562 * 13 12 11 30 30 H 1.08001 * 124.92417 * 180.02562 * 16 15 14 31 31 H 1.07999 * 126.90927 * 180.26340 * 17 16 15 32 32 H 1.07997 * 120.14666 * 0.02562 * 19 11 10 33 33 H 1.09004 * 110.01756 * 183.92065 * 20 9 7 34 34 H 1.09007 * 110.48681 * 335.78002 * 21 20 9 35 35 H 1.08992 * 110.48949 * 98.42567 * 21 20 9 36 36 H 1.09001 * 110.71496 * 279.56793 * 22 21 20 37 37 H 1.08997 * 110.92091 * 156.29579 * 22 21 20 38 38 H 1.08999 * 110.48756 * 203.40328 * 23 22 21 39 39 H 1.09003 * 110.59856 * 80.82087 * 23 22 21 40 40 H 1.08997 * 110.03598 * 238.56573 * 24 20 9 41 41 H 1.09005 * 110.02771 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0333 -1.2349 0.3447 9 7 1.3975 -2.3467 -0.4354 10 6 0.4622 -2.2934 -1.5617 11 6 1.2146 -2.5060 -2.8501 12 6 1.3805 -3.7905 -3.3475 13 6 2.0660 -4.0062 -4.5239 14 6 2.5970 -2.9285 -5.2216 15 8 3.2982 -2.8199 -6.3678 16 6 3.5900 -1.5342 -6.6314 17 6 3.0945 -0.7421 -5.6710 18 6 2.4256 -1.6303 -4.7127 19 6 1.7298 -1.4318 -3.5211 20 6 1.6774 -3.6243 0.2245 21 6 1.2262 -3.5677 1.6986 22 6 2.3074 -4.3783 2.4573 23 6 3.6111 -3.9853 1.7192 24 6 3.1930 -3.8901 0.2373 25 1 -0.4850 0.8368 0.0743 26 1 -0.0262 -1.3191 -1.5827 27 1 -0.2896 -3.0742 -1.4469 28 1 0.9685 -4.6301 -2.8074 29 1 2.1891 -5.0101 -4.9025 30 1 4.1435 -1.1897 -7.4924 31 1 3.1680 0.3340 -5.6156 32 1 1.5987 -0.4339 -3.1295 33 1 1.1609 -4.4327 -0.2932 34 1 1.2050 -2.5366 2.0518 35 1 0.2474 -4.0324 1.8162 36 1 2.1204 -5.4484 2.3680 37 1 2.3522 -4.0817 3.5052 38 1 4.3716 -4.7546 1.8524 39 1 3.9777 -3.0223 2.0747 40 1 3.4119 -4.8279 -0.2733 41 1 3.7203 -3.0682 -0.2471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290181851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = 28.302950 kcal Electronic energy + Delta-G solvation = -22790.773081 eV Core-core repulsion = 19636.611958 eV Total energy + Delta-G solvation = -3154.161123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.24683 -39.71024 -38.61633 -35.92123 -33.67556 -33.14640 -31.57408 -30.17282 -29.32369 -28.25625 -27.37191 -24.49487 -23.66556 -22.15007 -22.07791 -21.28924 -20.74279 -18.35551 -18.25006 -17.68747 -17.17790 -16.96415 -16.35590 -15.95756 -15.80779 -15.16022 -15.01079 -14.89912 -14.45850 -14.03924 -13.96504 -13.53806 -13.35970 -13.22098 -12.96091 -12.75072 -12.57977 -12.23513 -12.13523 -11.91167 -11.81295 -11.69991 -11.65636 -11.56137 -11.30926 -11.13053 -11.07126 -10.47631 -9.30861 -9.06198 -8.44005 -7.81268 -5.34115 0.10594 0.52690 1.37938 1.43727 1.51182 1.52203 1.96137 2.48971 2.85161 3.27684 3.67111 3.78537 3.84253 4.02135 4.03709 4.20943 4.24532 4.35056 4.47009 4.54301 4.62243 4.73525 4.78412 4.81027 4.89079 4.97884 4.99473 5.00979 5.08457 5.22816 5.27018 5.34747 5.35515 5.45401 5.55176 5.55329 5.63232 5.68507 5.73837 5.80542 5.86791 6.00198 6.30888 6.56028 7.22396 7.94115 8.44849 9.17866 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.006669 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.348122 B = 4197.266048 C = 5402.563449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.028 4.028 3 Si 0.934 3.066 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.234 4.234 8 H 0.048 0.952 9 N -0.578 5.578 10 C 0.180 3.820 11 C -0.096 4.096 12 C -0.089 4.089 13 C -0.106 4.106 14 C 0.017 3.983 15 O -0.205 6.205 16 C 0.019 3.981 17 C -0.239 4.239 18 C -0.155 4.155 19 C -0.080 4.080 20 C 0.164 3.836 21 C -0.129 4.129 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.126 4.126 25 H 0.250 0.750 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.256 0.744 31 H 0.165 0.835 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -8.375 -7.908 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.225 4.225 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.365 4.365 8 H 0.066 0.934 9 N -0.297 5.297 10 C 0.054 3.946 11 C -0.099 4.099 12 C -0.108 4.108 13 C -0.125 4.125 14 C -0.029 4.029 15 O -0.107 6.107 16 C -0.045 4.045 17 C -0.258 4.258 18 C -0.156 4.156 19 C -0.099 4.099 20 C 0.058 3.942 21 C -0.169 4.169 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.165 4.165 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.165 0.835 29 H 0.174 0.826 30 H 0.272 0.728 31 H 0.182 0.818 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.344 -8.469 -8.093 12.876 hybrid contribution 0.167 1.889 0.327 1.925 sum 5.511 -6.580 -7.766 11.575 Atomic orbital electron populations 1.69992 1.06304 1.25731 1.53848 1.25558 0.95464 1.00381 1.01126 0.85721 0.79064 0.81983 0.76887 1.19960 1.21824 1.21832 1.18933 0.93913 0.86222 1.37440 0.93405 1.44007 1.51216 1.03357 1.31125 1.19853 0.90302 1.01826 0.82634 1.20700 0.99247 0.92961 0.96949 1.21021 0.98315 0.96647 0.94771 1.20136 1.00228 0.97044 0.95044 1.19810 0.99389 0.95825 0.87923 1.83947 1.60649 1.29743 1.36368 1.24735 0.99934 0.78911 1.00931 1.22814 1.05668 1.01085 0.96275 1.20334 1.03151 0.94444 0.97694 1.20073 0.97791 0.98872 0.93171 1.21276 0.93828 0.87222 0.91871 1.22720 0.97693 0.99254 0.97194 1.22392 0.94350 0.99831 0.98337 1.22228 0.97657 1.00330 0.94974 1.22452 0.97353 1.00037 0.96704 0.94040 0.91093 0.93949 0.83454 0.82620 0.72842 0.81766 0.88894 0.91865 0.94015 0.93144 0.90127 0.91925 0.90470 0.93890 0.91518 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.12 11.42 21.65 0.25 -51.87 16 2 C -0.03 -1.54 4.96 84.86 0.42 -1.12 16 3 Si 0.93 44.93 29.61 68.60 2.03 46.97 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.42 7.80 84.03 0.66 -11.76 16 8 H 0.05 2.63 6.92 -2.92 -0.02 2.61 16 9 N -0.58 -27.34 2.37 -678.32 -1.61 -28.95 16 10 C 0.18 8.28 5.36 85.64 0.46 8.74 16 11 C -0.10 -3.95 5.43 -20.09 -0.11 -4.06 16 12 C -0.09 -3.00 9.66 22.30 0.22 -2.79 16 13 C -0.11 -3.29 10.07 22.35 0.23 -3.06 16 14 C 0.02 0.60 7.42 22.99 0.17 0.77 16 15 O -0.21 -6.05 10.58 -8.88 -0.09 -6.14 16 16 C 0.02 0.44 11.96 66.85 0.80 1.24 16 17 C -0.24 -7.20 11.14 23.54 0.26 -6.94 16 18 C -0.16 -5.89 6.40 -20.21 -0.13 -6.02 16 19 C -0.08 -3.45 9.68 22.20 0.21 -3.23 16 20 C 0.16 6.51 3.41 45.72 0.16 6.66 16 21 C -0.13 -4.98 6.43 31.70 0.20 -4.78 16 22 C -0.11 -3.35 6.91 31.91 0.22 -3.13 16 23 C -0.11 -3.61 6.83 31.67 0.22 -3.39 16 24 C -0.13 -4.54 6.14 31.32 0.19 -4.35 16 25 H 0.25 13.94 8.32 -92.71 -0.77 13.17 16 26 H 0.07 3.81 5.40 -2.39 -0.01 3.79 16 27 H 0.04 1.82 7.91 -2.39 -0.02 1.80 16 28 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 29 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.26 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.06 2.28 7.86 -2.39 -0.02 2.27 16 34 H 0.04 1.96 7.22 -2.38 -0.02 1.94 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.69 6.70 -2.38 -0.02 1.68 16 Total: -1.00 -64.11 334.37 5.76 -58.35 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.01 Total: 18.86 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 4.17 Total: -37.22 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -1.36 Total: -80.82 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.09 Total: -6.14 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.11 5.76 -58.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290181851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.653 kcal (2) G-P(sol) polarization free energy of solvation -64.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds