Wall clock time and date at job start Tue Mar 31 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46843 * 344.74991 * 3 2 1 5 5 N 1.46903 * 109.47096 * 179.84669 * 4 3 2 6 6 C 1.46905 * 110.99605 * 298.46469 * 5 4 3 7 7 C 1.50701 * 109.47016 * 293.12632 * 6 5 4 8 8 H 1.08000 * 120.00082 * 354.95903 * 7 6 5 9 9 C 1.37881 * 119.99964 * 174.95886 * 7 6 5 10 10 N 1.31511 * 119.99643 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00094 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46811 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47049 * 120.00014 * 11 9 7 14 14 H 1.48497 * 109.46739 * 240.00065 * 11 9 7 15 15 C 1.46893 * 111.00138 * 62.41507 * 5 4 3 16 16 C 1.50700 * 109.46991 * 66.04981 * 15 5 4 17 17 C 1.34343 * 126.51423 * 260.02260 * 16 15 5 18 18 N 1.36756 * 109.96995 * 179.97438 * 17 16 15 19 19 H 0.96997 * 125.02193 * 179.97438 * 18 17 16 20 20 C 1.37389 * 109.94967 * 359.97438 * 18 17 16 21 21 N 1.32626 * 133.43267 * 180.28706 * 20 18 17 22 22 C 1.31970 * 119.89652 * 180.21110 * 21 20 18 23 23 C 1.38733 * 120.65250 * 359.49167 * 22 21 20 24 24 N 1.31920 * 120.37102 * 0.23751 * 23 22 21 25 25 C 1.32949 * 119.64956 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.46787 * 224.75356 * 3 2 1 27 27 H 1.08999 * 109.46726 * 104.74963 * 3 2 1 28 28 H 1.09004 * 109.47490 * 59.84587 * 4 3 2 29 29 H 1.09004 * 109.47342 * 299.84373 * 4 3 2 30 30 H 1.08992 * 109.47358 * 53.12847 * 6 5 4 31 31 H 1.09005 * 109.47112 * 173.12958 * 6 5 4 32 32 H 0.97003 * 119.99744 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.47066 * 306.05047 * 15 5 4 34 34 H 1.09002 * 109.47481 * 186.05097 * 15 5 4 35 35 H 1.08000 * 125.01194 * 359.96058 * 17 16 15 36 36 H 1.08007 * 119.67406 * 179.76965 * 22 21 20 37 37 H 1.08002 * 119.81619 * 180.25062 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3908 0.3794 5 7 4.5876 -1.3912 0.3759 6 6 5.1108 -1.0790 -0.9609 7 6 4.7672 -2.1989 -1.9090 8 1 4.2876 -3.0926 -1.5379 9 6 5.0651 -2.0826 -3.2502 10 7 5.6495 -0.9945 -3.7019 11 14 4.6386 -3.4704 -4.4255 12 1 3.9922 -4.5754 -3.6728 13 1 3.7063 -2.9684 -5.4666 14 1 5.8786 -3.9709 -5.0711 15 6 5.1167 -0.4581 1.3794 16 6 4.7615 -0.9496 2.7590 17 6 3.7529 -0.5091 3.5294 18 7 3.7393 -1.1900 4.7153 19 1 3.1024 -1.0461 5.4326 20 6 4.7613 -2.1079 4.7406 21 7 5.1664 -2.9969 5.6375 22 6 6.2109 -3.7615 5.3805 23 6 6.8869 -3.6533 4.1739 24 7 6.4963 -2.7789 3.2666 25 6 5.4488 -1.9983 3.5136 26 1 2.9710 0.7306 0.7235 27 1 2.9712 0.2625 -0.9938 28 1 2.7533 -2.1213 -0.3425 29 1 2.7576 -1.6515 1.3744 30 1 4.6647 -0.1509 -1.3180 31 1 6.1937 -0.9656 -0.9098 32 1 5.8588 -0.9125 -4.6455 33 1 4.6822 0.5292 1.2223 34 1 6.2008 -0.3973 1.2833 35 1 3.0558 0.2681 3.2530 36 1 6.5400 -4.4817 6.1150 37 1 7.7376 -4.2886 3.9761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290916484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:00 Heat of formation + Delta-G solvation = 121.994042 kcal Electronic energy + Delta-G solvation = -21680.075945 eV Core-core repulsion = 18458.729980 eV Total energy + Delta-G solvation = -3221.345964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88273 -38.67734 -37.63185 -35.95477 -34.24751 -32.69455 -31.31861 -30.05903 -29.82947 -27.09993 -25.20918 -24.57311 -23.51853 -23.13466 -20.39620 -19.22794 -18.50105 -17.47213 -17.19109 -16.37411 -16.14167 -15.63655 -15.15843 -15.01953 -14.59131 -14.19853 -13.75116 -13.70509 -13.60918 -12.99397 -12.73044 -12.71085 -12.14331 -11.96735 -11.90766 -11.50200 -11.47964 -11.41224 -11.10477 -11.01200 -10.69006 -10.59515 -10.21896 -9.87656 -9.26576 -8.81924 -8.62114 -8.45224 -8.19188 -7.28477 -6.04453 -4.04941 0.87701 1.18747 2.55211 2.61500 3.06329 3.08766 3.31683 3.40092 3.44875 3.93118 4.15511 4.31375 4.34371 4.43385 4.49491 4.92948 5.09501 5.11647 5.19368 5.32006 5.35186 5.45807 5.48075 5.64077 5.77587 5.97422 6.09779 6.21266 6.30752 6.44228 6.63932 6.78666 7.05240 7.23347 7.25854 7.53781 7.79282 7.85086 7.99629 8.04996 8.11920 8.49414 9.03434 9.59919 11.05836 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.005173 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.547785 B = 5411.344176 C = 6731.300441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.224 3.776 3 C -0.076 4.076 4 C 0.073 3.927 5 N -0.518 5.518 6 C 0.187 3.813 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.058 3.942 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.119 3.881 16 C -0.119 4.119 17 C 0.068 3.932 18 N -0.576 5.576 19 H 0.420 0.580 20 C 0.232 3.768 21 N -0.460 5.460 22 C 0.076 3.924 23 C 0.031 3.969 24 N -0.383 5.383 25 C 0.076 3.924 26 H 0.098 0.902 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.005 0.995 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.182 0.818 36 H 0.170 0.830 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 1.153 16.997 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.093 4.093 3 C -0.118 4.118 4 C -0.058 4.058 5 N -0.240 5.240 6 C 0.062 3.938 7 C -0.543 4.543 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.210 1.210 15 C -0.009 4.009 16 C -0.127 4.127 17 C -0.060 4.060 18 N -0.183 5.183 19 H 0.258 0.742 20 C -0.005 4.005 21 N -0.179 5.179 22 C -0.091 4.091 23 C -0.138 4.138 24 N -0.096 5.096 25 C -0.063 4.063 26 H 0.116 0.884 27 H 0.142 0.858 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.022 0.978 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.199 0.801 36 H 0.187 0.813 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.352 0.863 16.962 17.038 hybrid contribution -0.299 0.048 -0.563 0.639 sum -1.651 0.912 16.399 16.507 Atomic orbital electron populations 1.81146 1.13235 1.09720 1.10018 1.29335 0.95312 0.92377 0.92271 1.20295 0.81387 1.03554 1.06541 1.22049 0.89512 0.93012 1.01193 1.62336 1.04520 1.49152 1.07988 1.19872 0.95711 0.96012 0.82157 1.21169 1.38952 1.02685 0.91539 0.91815 1.24933 0.95357 0.95780 0.98278 1.69946 1.42296 1.26772 1.14716 0.86522 0.78068 0.82436 0.80915 1.19699 1.21211 1.21040 1.20469 1.01065 0.93128 0.86280 1.20237 0.96837 0.98262 0.97382 1.21812 1.00185 0.99148 0.84867 1.41316 1.27374 1.32036 1.17577 0.74221 1.19220 0.92797 0.94338 0.94191 1.67175 1.14331 1.04712 1.31696 1.23444 0.91030 0.97009 0.97655 1.23604 1.01309 0.98003 0.90890 1.67899 1.10260 1.01513 1.29970 1.20527 0.94549 0.98228 0.92987 0.88359 0.85820 0.89179 0.92093 0.97761 0.94983 0.92992 0.94135 0.89625 0.80076 0.81277 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.06 18.54 42.15 0.78 -7.28 16 2 C 0.22 3.42 15.43 -20.76 -0.32 3.10 16 3 C -0.08 -1.05 5.05 -29.52 -0.15 -1.20 16 4 C 0.07 1.19 4.94 -3.82 -0.02 1.17 16 5 N -0.52 -9.62 4.69 -237.51 -1.11 -10.74 16 6 C 0.19 4.26 4.52 -4.97 -0.02 4.23 16 7 C -0.50 -13.11 8.40 -34.44 -0.29 -13.40 16 8 H 0.06 1.69 7.36 -52.49 -0.39 1.30 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.11 13.29 55.43 0.74 -24.38 16 11 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.12 1.81 5.29 -4.98 -0.03 1.78 16 16 C -0.12 -1.65 4.92 -102.74 -0.51 -2.16 16 17 C 0.07 0.71 10.99 -16.73 -0.18 0.53 16 18 N -0.58 -6.06 6.05 -12.10 -0.07 -6.13 16 19 H 0.42 3.12 8.96 -40.82 -0.37 2.75 16 20 C 0.23 3.21 8.42 -155.64 -1.31 1.90 16 21 N -0.46 -6.11 10.52 -12.11 -0.13 -6.23 16 22 C 0.08 0.84 11.19 -17.31 -0.19 0.64 16 23 C 0.03 0.37 11.21 -17.33 -0.19 0.18 16 24 N -0.38 -6.21 10.55 -9.72 -0.10 -6.31 16 25 C 0.08 1.18 7.49 -83.05 -0.62 0.56 16 26 H 0.10 1.05 6.34 -51.93 -0.33 0.72 16 27 H 0.12 1.97 6.29 -51.93 -0.33 1.65 16 28 H 0.09 1.70 6.98 -51.93 -0.36 1.33 16 29 H 0.06 0.90 6.64 -51.93 -0.34 0.56 16 30 H 0.00 0.11 6.01 -51.93 -0.31 -0.20 16 31 H 0.03 0.80 7.92 -51.93 -0.41 0.39 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.04 0.51 6.08 -51.93 -0.32 0.20 16 34 H 0.09 1.43 7.92 -51.93 -0.41 1.01 16 35 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 320.76 15.07 4.83 4.83 Total: -1.00 -33.10 320.76 -7.99 -41.08 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.97 Total: 0.30 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.93 Total: -1.20 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.10 Total: -61.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.10 -7.99 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290916484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.077 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds