Wall clock time and date at job start Tue Mar 31 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46843 * 344.74991 * 3 2 1 5 5 N 1.46903 * 109.47096 * 179.84669 * 4 3 2 6 6 C 1.46905 * 110.99605 * 298.46469 * 5 4 3 7 7 C 1.50701 * 109.47016 * 293.12632 * 6 5 4 8 8 H 1.08000 * 120.00082 * 354.95903 * 7 6 5 9 9 C 1.37881 * 119.99964 * 174.95886 * 7 6 5 10 10 N 1.31511 * 119.99643 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00094 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46811 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47049 * 120.00014 * 11 9 7 14 14 H 1.48497 * 109.46739 * 240.00065 * 11 9 7 15 15 C 1.46893 * 111.00138 * 62.41507 * 5 4 3 16 16 C 1.50700 * 109.46991 * 66.04981 * 15 5 4 17 17 C 1.34343 * 126.51423 * 260.02260 * 16 15 5 18 18 N 1.36756 * 109.96995 * 179.97438 * 17 16 15 19 19 H 0.96997 * 125.02193 * 179.97438 * 18 17 16 20 20 C 1.37389 * 109.94967 * 359.97438 * 18 17 16 21 21 N 1.32626 * 133.43267 * 180.28706 * 20 18 17 22 22 C 1.31970 * 119.89652 * 180.21110 * 21 20 18 23 23 C 1.38733 * 120.65250 * 359.49167 * 22 21 20 24 24 N 1.31920 * 120.37102 * 0.23751 * 23 22 21 25 25 C 1.32949 * 119.64956 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.46787 * 224.75356 * 3 2 1 27 27 H 1.08999 * 109.46726 * 104.74963 * 3 2 1 28 28 H 1.09004 * 109.47490 * 59.84587 * 4 3 2 29 29 H 1.09004 * 109.47342 * 299.84373 * 4 3 2 30 30 H 1.08992 * 109.47358 * 53.12847 * 6 5 4 31 31 H 1.09005 * 109.47112 * 173.12958 * 6 5 4 32 32 H 0.97003 * 119.99744 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.47066 * 306.05047 * 15 5 4 34 34 H 1.09002 * 109.47481 * 186.05097 * 15 5 4 35 35 H 1.08000 * 125.01194 * 359.96058 * 17 16 15 36 36 H 1.08007 * 119.67406 * 179.76965 * 22 21 20 37 37 H 1.08002 * 119.81619 * 180.25062 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3908 0.3794 5 7 4.5876 -1.3912 0.3759 6 6 5.1108 -1.0790 -0.9609 7 6 4.7672 -2.1989 -1.9090 8 1 4.2876 -3.0926 -1.5379 9 6 5.0651 -2.0826 -3.2502 10 7 5.6495 -0.9945 -3.7019 11 14 4.6386 -3.4704 -4.4255 12 1 3.9922 -4.5754 -3.6728 13 1 3.7063 -2.9684 -5.4666 14 1 5.8786 -3.9709 -5.0711 15 6 5.1167 -0.4581 1.3794 16 6 4.7615 -0.9496 2.7590 17 6 3.7529 -0.5091 3.5294 18 7 3.7393 -1.1900 4.7153 19 1 3.1024 -1.0461 5.4326 20 6 4.7613 -2.1079 4.7406 21 7 5.1664 -2.9969 5.6375 22 6 6.2109 -3.7615 5.3805 23 6 6.8869 -3.6533 4.1739 24 7 6.4963 -2.7789 3.2666 25 6 5.4488 -1.9983 3.5136 26 1 2.9710 0.7306 0.7235 27 1 2.9712 0.2625 -0.9938 28 1 2.7533 -2.1213 -0.3425 29 1 2.7576 -1.6515 1.3744 30 1 4.6647 -0.1509 -1.3180 31 1 6.1937 -0.9656 -0.9098 32 1 5.8588 -0.9125 -4.6455 33 1 4.6822 0.5292 1.2223 34 1 6.2008 -0.3973 1.2833 35 1 3.0558 0.2681 3.2530 36 1 6.5400 -4.4817 6.1150 37 1 7.7376 -4.2886 3.9761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290916484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:00 Heat of formation + Delta-G solvation = 98.385330 kcal Electronic energy + Delta-G solvation = -21681.099695 eV Core-core repulsion = 18458.729980 eV Total energy + Delta-G solvation = -3222.369715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.80689 -39.71517 -38.88231 -37.27629 -35.26843 -34.62756 -32.41869 -31.39823 -30.79885 -28.72919 -26.48535 -25.53977 -25.10388 -24.15558 -21.83368 -20.27976 -19.47658 -18.70487 -18.25459 -18.05147 -17.23584 -16.89809 -16.44547 -16.17472 -15.85981 -15.56338 -15.18102 -14.99190 -14.46226 -14.35386 -13.95614 -13.65943 -13.65079 -13.46689 -13.15145 -12.93927 -12.80323 -12.67258 -12.44557 -12.43923 -12.29712 -12.23359 -11.85891 -11.41255 -11.19051 -10.50043 -9.79004 -9.54088 -9.15751 -8.72522 -8.09671 -6.15849 -0.03108 0.23203 1.42475 1.45859 1.55870 1.62272 1.77922 1.82690 1.85812 2.47052 2.96227 3.09011 3.23833 3.31097 3.47281 3.55365 3.72895 4.09746 4.19860 4.26311 4.33146 4.41401 4.51537 4.57940 4.60962 4.84257 4.96580 5.08850 5.22808 5.27069 5.43799 5.48343 5.52804 5.78603 5.85458 6.21706 6.24359 6.48003 6.65686 6.67994 6.81746 7.01286 7.06056 7.52786 8.99361 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.005173 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.547785 B = 5411.344176 C = 6731.300441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.247 3.753 3 C -0.062 4.062 4 C 0.080 3.920 5 N -0.533 5.533 6 C 0.203 3.797 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.012 3.988 10 N -0.927 5.927 11 Si 0.948 3.052 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.283 1.283 15 C 0.128 3.872 16 C -0.160 4.160 17 C 0.105 3.895 18 N -0.560 5.560 19 H 0.437 0.563 20 C 0.213 3.787 21 N -0.472 5.472 22 C 0.081 3.919 23 C 0.027 3.973 24 N -0.435 5.435 25 C 0.042 3.958 26 H 0.142 0.858 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.003 0.997 31 H 0.000 1.000 32 H 0.261 0.739 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.227 0.773 36 H 0.213 0.787 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 1.326 18.833 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.070 4.070 3 C -0.104 4.104 4 C -0.051 4.051 5 N -0.256 5.256 6 C 0.077 3.923 7 C -0.550 4.550 8 H 0.071 0.929 9 C -0.187 4.187 10 N -0.568 5.568 11 Si 0.774 3.226 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.209 1.209 15 C 0.000 4.000 16 C -0.168 4.168 17 C -0.025 4.025 18 N -0.169 5.169 19 H 0.278 0.722 20 C -0.024 4.024 21 N -0.191 5.191 22 C -0.087 4.087 23 C -0.141 4.141 24 N -0.150 5.150 25 C -0.095 4.095 26 H 0.159 0.841 27 H 0.123 0.877 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.021 0.979 31 H 0.018 0.982 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.229 0.771 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.456 1.042 18.835 19.023 hybrid contribution 0.097 -0.070 -1.017 1.025 sum -2.359 0.972 17.818 18.000 Atomic orbital electron populations 1.81179 1.14269 1.10883 1.11222 1.29371 0.95179 0.91258 0.91163 1.20204 0.80415 1.03042 1.06710 1.21902 0.88057 0.93646 1.01448 1.62132 1.05943 1.51114 1.06395 1.19479 0.93796 0.94840 0.84172 1.21461 1.38073 1.03106 0.92347 0.92904 1.25606 0.95532 0.97700 0.99832 1.70034 1.43511 1.28278 1.15005 0.85658 0.77786 0.80036 0.79092 1.19570 1.20725 1.20879 1.20328 0.99601 0.93828 0.86249 1.20118 0.99216 1.00133 0.97358 1.22386 0.98626 0.97971 0.83498 1.41367 1.26640 1.30807 1.18046 0.72231 1.19396 0.93735 0.95327 0.93959 1.67288 1.15111 1.05037 1.31684 1.24125 0.89869 0.96736 0.97924 1.24182 1.01868 0.97246 0.90822 1.67853 1.11695 1.03294 1.32117 1.20911 0.95166 0.99080 0.94377 0.84086 0.87661 0.92355 0.89970 0.97944 0.98190 0.92957 0.91024 0.92279 0.75649 0.77063 0.78665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.42 18.54 20.01 0.37 -16.05 16 2 C 0.25 7.01 15.43 89.44 1.38 8.39 16 3 C -0.06 -1.59 5.05 28.79 0.15 -1.44 16 4 C 0.08 2.51 4.94 86.30 0.43 2.94 16 5 N -0.53 -19.89 4.69 -905.35 -4.24 -24.14 16 6 C 0.20 9.49 4.52 85.56 0.39 9.87 16 7 C -0.51 -27.18 8.40 25.60 0.22 -26.96 16 8 H 0.05 2.87 7.36 -2.91 -0.02 2.85 16 9 C 0.01 0.63 5.46 84.66 0.46 1.09 16 10 N -0.93 -52.76 13.29 21.45 0.28 -52.48 16 11 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 C 0.13 3.80 5.29 85.56 0.45 4.25 16 16 C -0.16 -4.22 4.92 -18.64 -0.09 -4.31 16 17 C 0.11 1.82 10.99 83.03 0.91 2.73 16 18 N -0.56 -10.13 6.05 -192.19 -1.16 -11.30 16 19 H 0.44 4.96 8.96 -92.71 -0.83 4.13 16 20 C 0.21 5.56 8.42 134.02 1.13 6.69 16 21 N -0.47 -11.70 10.52 -192.23 -2.02 -13.72 16 22 C 0.08 1.63 11.19 84.79 0.95 2.58 16 23 C 0.03 0.65 11.21 84.80 0.95 1.60 16 24 N -0.44 -14.31 10.55 -184.65 -1.95 -16.26 16 25 C 0.04 1.30 7.49 41.78 0.31 1.61 16 26 H 0.14 2.41 6.34 -2.39 -0.02 2.40 16 27 H 0.11 3.24 6.29 -2.39 -0.02 3.23 16 28 H 0.06 2.21 6.98 -2.38 -0.02 2.19 16 29 H 0.08 2.25 6.64 -2.39 -0.02 2.23 16 30 H 0.00 0.14 6.01 -2.39 -0.01 0.12 16 31 H 0.00 0.00 7.92 -2.38 -0.02 -0.02 16 32 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.07 1.63 6.08 -2.38 -0.01 1.61 16 34 H 0.06 2.05 7.92 -2.39 -0.02 2.03 16 35 H 0.23 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -75.03 320.76 1.24 -73.80 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.30 Total: 5.36 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 7.63 Total: 9.04 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -8.72 Total: -133.95 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -75.03 1.24 -73.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290916484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.184 kcal (2) G-P(sol) polarization free energy of solvation -75.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds