Wall clock time and date at job start Tue Mar 31 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00175 * 2 1 4 4 H 1.48508 * 109.46824 * 270.00013 * 3 2 1 5 5 H 1.48499 * 109.47310 * 29.99723 * 3 2 1 6 6 H 1.48501 * 109.47245 * 150.00415 * 3 2 1 7 7 C 1.37877 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00054 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00212 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99914 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99910 * 180.02562 * 11 10 9 14 14 C 1.46492 * 119.99984 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.52151 * 350.87008 * 14 13 11 16 16 C 1.56156 * 118.09698 * 204.75355 * 14 13 11 17 17 H 1.09004 * 119.13992 * 0.05708 * 16 14 13 18 18 C 1.53611 * 117.81596 * 148.08755 * 16 14 13 19 19 C 1.53559 * 108.18869 * 24.83228 * 18 16 14 20 20 C 1.50889 * 108.60056 * 63.33159 * 19 18 16 21 21 C 1.38095 * 120.40170 * 135.95320 * 20 19 18 22 22 C 1.38266 * 119.91392 * 179.90818 * 21 20 19 23 23 C 1.38252 * 120.05146 * 0.02562 * 22 21 20 24 24 C 1.38273 * 120.04039 * 0.02562 * 23 22 21 25 25 C 1.38080 * 119.90593 * 0.02562 * 24 23 22 26 26 C 1.50924 * 120.41309 * 179.97438 * 25 24 23 27 27 H 1.09002 * 115.71436 * 347.27173 * 26 25 24 28 28 H 0.97009 * 119.99832 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46667 * 59.99670 * 9 7 2 30 30 H 1.08995 * 109.47128 * 299.99814 * 9 7 2 31 31 H 1.08998 * 109.47024 * 59.99633 * 10 9 7 32 32 H 1.09004 * 109.47128 * 300.00350 * 10 9 7 33 33 H 0.97002 * 119.99662 * 359.97438 * 13 11 10 34 34 H 1.08997 * 109.71826 * 265.16159 * 18 16 14 35 35 H 1.09003 * 109.76024 * 144.53269 * 18 16 14 36 36 H 1.08997 * 109.61899 * 303.59271 * 19 18 16 37 37 H 1.09001 * 109.61495 * 183.06034 * 19 18 16 38 38 H 1.08007 * 120.03963 * 359.92401 * 21 20 19 39 39 H 1.08003 * 119.97403 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.97808 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.04986 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0009 12 8 6.1349 -1.5863 -0.0015 13 7 6.2024 -3.8038 -0.0014 14 6 7.6673 -3.8038 -0.0007 15 1 8.1370 -2.8326 -0.1560 16 6 8.4030 -5.0545 -0.5780 17 1 7.8133 -5.8862 -0.9634 18 6 9.7582 -4.8343 -1.2668 19 6 10.3776 -3.5462 -0.7054 20 6 10.6372 -3.7396 0.7683 21 6 11.8290 -3.3238 1.3284 22 6 12.0556 -3.5042 2.6804 23 6 11.0905 -4.1006 3.4706 24 6 9.8975 -4.5180 2.9096 25 6 9.6718 -4.3387 1.5593 26 6 8.3741 -4.7904 0.9350 27 1 7.7525 -5.4385 1.5528 28 1 -0.4850 0.8401 0.0004 29 1 3.8751 -0.6804 0.8889 30 1 3.8745 -0.6802 -0.8911 31 1 3.6578 -3.1506 -0.8907 32 1 3.6584 -3.1503 0.8892 33 1 5.7173 -4.6439 -0.0013 34 1 9.6121 -4.7338 -2.3422 35 1 10.4169 -5.6785 -1.0626 36 1 9.6872 -2.7152 -0.8494 37 1 11.3168 -3.3381 -1.2181 38 1 12.5831 -2.8580 0.7112 39 1 12.9871 -3.1790 3.1196 40 1 11.2685 -4.2406 4.5266 41 1 9.1434 -4.9836 3.5268 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291884147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:47 Heat of formation + Delta-G solvation = -3.507421 kcal Electronic energy + Delta-G solvation = -21421.881932 eV Core-core repulsion = 18266.341408 eV Total energy + Delta-G solvation = -3155.540524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81989 -39.14217 -37.37653 -34.07906 -33.48843 -32.51127 -31.27289 -30.49545 -29.61728 -26.33585 -24.74378 -23.37001 -22.17667 -21.71714 -20.89937 -19.72245 -19.01555 -17.27857 -16.88148 -16.49607 -15.94529 -15.48612 -14.98219 -14.88633 -14.44949 -14.15324 -13.99419 -13.59512 -13.38317 -13.08665 -12.79017 -12.69490 -12.56236 -12.41343 -12.02944 -11.68587 -11.43331 -11.35303 -11.18846 -10.94901 -10.80340 -10.22303 -10.13003 -10.04750 -9.78642 -9.32491 -9.18761 -9.01274 -8.85841 -8.51076 -8.34508 -6.03140 -4.01982 1.12093 1.21344 2.93389 3.20338 3.38216 3.44467 3.44843 3.55968 3.89509 4.41172 4.42868 4.51086 4.53305 4.62256 4.75483 4.82690 4.86719 5.00047 5.02375 5.20556 5.27025 5.32429 5.33257 5.50691 5.59558 5.68436 5.73974 5.82462 5.85541 5.88921 6.02186 6.07198 6.07611 6.31421 6.33234 6.50563 6.61411 6.67387 6.82573 7.35763 7.42880 7.70806 7.78782 8.49053 8.60844 8.99733 9.59911 11.09668 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.003210 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.987291 B = 8720.676335 C = 9029.921379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.514 3.486 12 O -0.536 6.536 13 N -0.712 5.712 14 C 0.105 3.895 15 H 0.142 0.858 16 C -0.156 4.156 17 H 0.115 0.885 18 C -0.084 4.084 19 C -0.093 4.093 20 C -0.081 4.081 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.110 4.110 25 C -0.045 4.045 26 C -0.129 4.129 27 H 0.114 0.886 28 H 0.263 0.737 29 H 0.024 0.976 30 H 0.019 0.981 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.401 0.599 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.295 -13.422 1.596 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.303 3.697 12 O -0.412 6.412 13 N -0.363 5.363 14 C -0.002 4.002 15 H 0.159 0.841 16 C -0.175 4.175 17 H 0.133 0.867 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.081 4.081 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.128 4.128 25 C -0.045 4.045 26 C -0.149 4.149 27 H 0.132 0.868 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.235 0.765 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 24.531 -12.497 1.593 27.576 hybrid contribution 0.121 0.318 0.204 0.397 sum 24.652 -12.178 1.796 27.555 Atomic orbital electron populations 1.69912 1.06300 1.26980 1.51051 1.24970 0.94712 0.99244 0.94314 0.86798 0.80632 0.83382 0.78764 1.20214 1.21421 1.18527 1.21106 0.89244 0.94575 1.51382 0.90924 1.19376 0.96439 0.90128 0.97721 1.21681 0.87531 1.03429 1.03465 1.21615 0.91571 0.82587 0.73886 1.90653 1.70757 1.31396 1.48362 1.45593 1.04648 1.09533 1.76487 1.22409 0.81101 0.95989 1.00668 0.84074 1.23686 0.98909 1.00411 0.94543 0.86731 1.21212 0.93938 0.97496 0.99514 1.20895 1.01867 0.98774 0.91425 1.19790 0.94010 0.98564 0.95741 1.20968 0.96779 1.00386 0.95248 1.21113 0.99344 0.99805 0.93965 1.21111 0.93947 0.99296 0.99760 1.20923 0.97373 1.00363 0.94149 1.19006 0.93743 0.98471 0.93287 1.21927 0.96394 1.03879 0.92743 0.86799 0.92707 0.95793 0.96219 0.89447 0.89473 0.76519 0.90489 0.90889 0.89686 0.90519 0.86066 0.86201 0.86125 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 7 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.33 5.64 -27.88 -0.16 -2.49 16 11 C 0.51 9.36 7.83 -10.98 -0.09 9.28 16 12 O -0.54 -11.96 15.55 5.56 0.09 -11.87 16 13 N -0.71 -9.55 5.60 -52.05 -0.29 -9.84 16 14 C 0.11 1.32 5.58 -66.11 -0.37 0.95 16 15 H 0.14 2.09 5.17 -51.93 -0.27 1.82 16 16 C -0.16 -1.46 6.61 -88.29 -0.58 -2.04 16 17 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 18 C -0.08 -0.70 6.15 -26.12 -0.16 -0.86 16 19 C -0.09 -0.86 5.48 -27.50 -0.15 -1.01 16 20 C -0.08 -0.87 5.46 -104.51 -0.57 -1.44 16 21 C -0.12 -1.13 9.69 -39.62 -0.38 -1.51 16 22 C -0.12 -1.15 10.05 -39.57 -0.40 -1.55 16 23 C -0.12 -1.18 10.05 -39.56 -0.40 -1.58 16 24 C -0.11 -1.16 9.76 -39.63 -0.39 -1.55 16 25 C -0.04 -0.51 5.57 -104.50 -0.58 -1.09 16 26 C -0.13 -1.38 5.99 -91.22 -0.55 -1.92 16 27 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.02 0.63 7.16 -51.93 -0.37 0.25 16 30 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.40 4.09 8.83 -40.82 -0.36 3.73 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.91 6.04 -51.93 -0.31 0.59 16 37 H 0.08 0.58 8.00 -51.93 -0.42 0.16 16 38 H 0.12 0.93 8.03 -52.48 -0.42 0.51 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -34.35 335.71 -10.27 -44.62 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.93 Total: 1.63 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -5.30 Total: -20.30 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.48 Total: -37.15 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.35 -10.27 -44.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291884147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.112 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds