Wall clock time and date at job start Tue Mar 31 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00175 * 2 1 4 4 H 1.48508 * 109.46824 * 270.00013 * 3 2 1 5 5 H 1.48499 * 109.47310 * 29.99723 * 3 2 1 6 6 H 1.48501 * 109.47245 * 150.00415 * 3 2 1 7 7 C 1.37877 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00054 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00212 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47373 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99914 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99910 * 180.02562 * 11 10 9 14 14 C 1.46492 * 119.99984 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.52151 * 350.87008 * 14 13 11 16 16 C 1.56156 * 118.09698 * 204.75355 * 14 13 11 17 17 H 1.09004 * 119.13992 * 0.05708 * 16 14 13 18 18 C 1.53611 * 117.81596 * 148.08755 * 16 14 13 19 19 C 1.53559 * 108.18869 * 24.83228 * 18 16 14 20 20 C 1.50889 * 108.60056 * 63.33159 * 19 18 16 21 21 C 1.38095 * 120.40170 * 135.95320 * 20 19 18 22 22 C 1.38266 * 119.91392 * 179.90818 * 21 20 19 23 23 C 1.38252 * 120.05146 * 0.02562 * 22 21 20 24 24 C 1.38273 * 120.04039 * 0.02562 * 23 22 21 25 25 C 1.38080 * 119.90593 * 0.02562 * 24 23 22 26 26 C 1.50924 * 120.41309 * 179.97438 * 25 24 23 27 27 H 1.09002 * 115.71436 * 347.27173 * 26 25 24 28 28 H 0.97009 * 119.99832 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46667 * 59.99670 * 9 7 2 30 30 H 1.08995 * 109.47128 * 299.99814 * 9 7 2 31 31 H 1.08998 * 109.47024 * 59.99633 * 10 9 7 32 32 H 1.09004 * 109.47128 * 300.00350 * 10 9 7 33 33 H 0.97002 * 119.99662 * 359.97438 * 13 11 10 34 34 H 1.08997 * 109.71826 * 265.16159 * 18 16 14 35 35 H 1.09003 * 109.76024 * 144.53269 * 18 16 14 36 36 H 1.08997 * 109.61899 * 303.59271 * 19 18 16 37 37 H 1.09001 * 109.61495 * 183.06034 * 19 18 16 38 38 H 1.08007 * 120.03963 * 359.92401 * 21 20 19 39 39 H 1.08003 * 119.97403 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.97808 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.04986 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0009 12 8 6.1349 -1.5863 -0.0015 13 7 6.2024 -3.8038 -0.0014 14 6 7.6673 -3.8038 -0.0007 15 1 8.1370 -2.8326 -0.1560 16 6 8.4030 -5.0545 -0.5780 17 1 7.8133 -5.8862 -0.9634 18 6 9.7582 -4.8343 -1.2668 19 6 10.3776 -3.5462 -0.7054 20 6 10.6372 -3.7396 0.7683 21 6 11.8290 -3.3238 1.3284 22 6 12.0556 -3.5042 2.6804 23 6 11.0905 -4.1006 3.4706 24 6 9.8975 -4.5180 2.9096 25 6 9.6718 -4.3387 1.5593 26 6 8.3741 -4.7904 0.9350 27 1 7.7525 -5.4385 1.5528 28 1 -0.4850 0.8401 0.0004 29 1 3.8751 -0.6804 0.8889 30 1 3.8745 -0.6802 -0.8911 31 1 3.6578 -3.1506 -0.8907 32 1 3.6584 -3.1503 0.8892 33 1 5.7173 -4.6439 -0.0013 34 1 9.6121 -4.7338 -2.3422 35 1 10.4169 -5.6785 -1.0626 36 1 9.6872 -2.7152 -0.8494 37 1 11.3168 -3.3381 -1.2181 38 1 12.5831 -2.8580 0.7112 39 1 12.9871 -3.1790 3.1196 40 1 11.2685 -4.2406 4.5266 41 1 9.1434 -4.9836 3.5268 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291884147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:46 Heat of formation + Delta-G solvation = -24.179027 kcal Electronic energy + Delta-G solvation = -21422.778320 eV Core-core repulsion = 18266.341408 eV Total energy + Delta-G solvation = -3156.436912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65624 -40.44300 -38.25701 -35.56492 -35.10868 -33.56834 -33.08711 -31.32006 -30.38874 -28.14713 -25.63448 -24.27395 -23.28023 -22.87688 -22.00207 -21.23756 -19.76583 -19.20939 -17.91664 -17.56992 -17.20306 -16.51995 -16.27178 -16.20609 -15.78457 -15.19747 -14.98587 -14.76991 -14.64288 -14.48802 -14.13118 -13.83645 -13.64089 -13.41912 -13.10521 -12.94301 -12.79179 -12.40942 -12.29100 -12.13714 -11.97963 -11.94841 -11.77884 -11.50184 -11.40901 -10.99859 -10.81551 -10.78557 -9.92903 -9.64451 -9.23439 -8.32269 -6.35022 0.36308 0.47183 1.32395 1.34460 1.49610 1.58934 2.06560 2.34347 2.62189 3.03499 3.05408 3.64351 3.65673 3.73319 3.83381 3.91713 4.03700 4.14579 4.17642 4.28547 4.32751 4.38382 4.48648 4.52246 4.61754 4.75562 4.83479 4.91098 5.00996 5.02851 5.09560 5.13945 5.18688 5.27909 5.32880 5.43536 5.53044 5.59052 5.60454 5.60894 5.75962 6.11558 6.22687 6.55098 6.71422 7.27767 7.30504 8.83393 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.003210 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.987291 B = 8720.676335 C = 9029.921379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.005 3.995 10 C -0.115 4.115 11 C 0.518 3.482 12 O -0.586 6.586 13 N -0.688 5.688 14 C 0.073 3.927 15 H 0.115 0.885 16 C -0.128 4.128 17 H 0.138 0.862 18 C -0.084 4.084 19 C -0.093 4.093 20 C -0.096 4.096 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.069 4.069 26 C -0.123 4.123 27 H 0.125 0.875 28 H 0.267 0.733 29 H 0.008 0.992 30 H 0.009 0.991 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.419 0.581 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.302 -14.718 1.473 30.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.070 0.930 9 C -0.033 4.033 10 C -0.154 4.154 11 C 0.307 3.693 12 O -0.465 6.465 13 N -0.339 5.339 14 C -0.033 4.033 15 H 0.132 0.868 16 C -0.147 4.147 17 H 0.156 0.844 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.096 4.096 21 C -0.144 4.144 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.069 4.069 26 C -0.142 4.142 27 H 0.143 0.857 28 H 0.076 0.924 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.256 0.744 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 26.551 -13.860 1.467 29.986 hybrid contribution -0.449 0.636 0.278 0.826 sum 26.101 -13.224 1.745 29.312 Atomic orbital electron populations 1.70019 1.07742 1.28100 1.52513 1.25790 0.95488 1.02805 0.94294 0.85847 0.79170 0.79620 0.79185 1.19265 1.20286 1.18808 1.21426 0.91170 0.93769 1.50284 0.92994 1.19226 0.93994 0.93796 0.96333 1.21499 0.88675 0.99975 1.05288 1.21271 0.91058 0.83176 0.73817 1.90637 1.71380 1.33342 1.51165 1.45236 1.05381 1.08808 1.74447 1.22396 0.80054 0.96391 1.04469 0.86764 1.23839 0.98771 0.98359 0.93781 0.84399 1.21292 0.93348 0.97321 1.00126 1.20906 1.02313 0.98686 0.91100 1.20049 0.94392 0.98692 0.96461 1.21284 0.96998 1.00267 0.95888 1.21463 1.00164 0.99154 0.93926 1.21426 0.93694 0.98958 1.00911 1.21176 0.98178 1.00744 0.94217 1.19237 0.94275 0.99513 0.93895 1.21966 0.95928 1.02632 0.93718 0.85695 0.92352 0.97370 0.97271 0.87526 0.87798 0.74387 0.89109 0.89651 0.91658 0.88872 0.84337 0.83984 0.84206 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 2 C 0.01 0.84 5.47 84.66 0.46 1.30 16 3 Si 0.94 47.20 27.47 68.60 1.88 49.08 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.26 -13.30 6.54 99.48 0.65 -12.65 16 7 C -0.53 -30.61 9.66 25.60 0.25 -30.37 16 8 H 0.05 3.15 7.99 -2.91 -0.02 3.12 16 9 C 0.00 0.23 3.33 29.85 0.10 0.33 16 10 C -0.11 -4.31 5.64 29.85 0.17 -4.15 16 11 C 0.52 18.61 7.83 87.66 0.69 19.30 16 12 O -0.59 -26.55 15.55 -3.04 -0.05 -26.60 16 13 N -0.69 -17.50 5.60 -436.97 -2.45 -19.95 16 14 C 0.07 1.76 5.58 46.17 0.26 2.02 16 15 H 0.11 3.47 5.17 -2.39 -0.01 3.46 16 16 C -0.13 -2.09 6.61 -9.29 -0.06 -2.15 16 17 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 18 C -0.08 -1.19 6.15 30.99 0.19 -1.00 16 19 C -0.09 -1.63 5.48 30.10 0.16 -1.46 16 20 C -0.10 -1.95 5.46 -19.79 -0.11 -2.06 16 21 C -0.13 -2.29 9.69 22.24 0.22 -2.07 16 22 C -0.13 -2.18 10.05 22.28 0.22 -1.95 16 23 C -0.13 -2.34 10.05 22.28 0.22 -2.11 16 24 C -0.13 -2.51 9.76 22.24 0.22 -2.30 16 25 C -0.07 -1.49 5.57 -19.78 -0.11 -1.60 16 26 C -0.12 -2.42 5.99 -11.18 -0.07 -2.48 16 27 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 29 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 30 H 0.01 0.46 7.53 -2.39 -0.02 0.45 16 31 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 32 H 0.10 3.54 8.14 -2.38 -0.02 3.52 16 33 H 0.42 7.51 8.83 -92.71 -0.82 6.69 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.42 6.04 -2.39 -0.01 1.40 16 37 H 0.09 1.26 8.00 -2.39 -0.02 1.24 16 38 H 0.14 1.89 8.03 -2.91 -0.02 1.86 16 39 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -75.38 335.71 2.66 -72.71 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.16 Total: 14.49 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 2.81 Total: -30.76 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.15 Total: -78.93 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.88 Total: 49.08 kcal Total: -75.38 2.66 -72.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291884147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.535 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds