Wall clock time and date at job start Tue Mar 31 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 119.99981 * 2 1 4 4 H 1.48503 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47272 * 299.99914 * 3 2 1 6 6 H 1.48507 * 109.47438 * 59.99900 * 3 2 1 7 7 C 1.37880 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99675 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47268 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46834 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00455 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99826 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00218 * 180.02562 * 13 11 10 15 15 H 1.09002 * 115.53103 * 350.58073 * 14 13 11 16 16 C 1.53045 * 117.45516 * 205.07021 * 14 13 11 17 17 H 1.09001 * 118.05683 * 144.51150 * 16 14 13 18 18 C 1.53652 * 116.99586 * 357.94893 * 16 14 13 19 19 C 1.53559 * 108.14830 * 249.99456 * 18 16 14 20 20 C 1.50884 * 108.60402 * 63.31870 * 19 18 16 21 21 C 1.38096 * 120.38619 * 135.92620 * 20 19 18 22 22 C 1.38264 * 119.92305 * 179.97438 * 21 20 19 23 23 C 1.38263 * 120.03853 * 0.02562 * 22 21 20 24 24 C 1.38264 * 120.04439 * 0.03618 * 23 22 21 25 25 C 1.38085 * 119.91542 * 359.95471 * 24 23 22 26 26 C 1.50888 * 120.39534 * 179.97438 * 25 24 23 27 27 H 1.09005 * 116.11517 * 57.82963 * 26 25 24 28 28 H 0.97004 * 120.00258 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47208 * 59.99714 * 9 7 2 30 30 H 1.09007 * 109.46848 * 299.99873 * 9 7 2 31 31 H 1.08999 * 109.46588 * 59.99952 * 10 9 7 32 32 H 1.08996 * 109.46571 * 299.99882 * 10 9 7 33 33 H 0.97009 * 120.00022 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.72986 * 9.65565 * 18 16 14 35 35 H 1.09004 * 109.72842 * 130.33123 * 18 16 14 36 36 H 1.08999 * 109.61696 * 183.05590 * 19 18 16 37 37 H 1.09001 * 109.60790 * 303.58587 * 19 18 16 38 38 H 1.08002 * 120.03662 * 359.96556 * 21 20 19 39 39 H 1.07990 * 119.98096 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.97526 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.04239 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1656 -6.1344 -0.0003 14 6 1.4332 -7.4031 -0.0003 15 1 0.3580 -7.3249 0.1611 16 6 2.1459 -8.6293 0.5748 17 1 1.5491 -9.3602 1.1204 18 6 3.5907 -8.4328 1.0595 19 6 4.5251 -9.1706 0.0897 20 6 4.4059 -8.5329 -1.2726 21 6 5.5356 -8.2693 -2.0218 22 6 5.4152 -7.6851 -3.2691 23 6 4.1652 -7.3646 -3.7656 24 6 3.0341 -7.6273 -3.0150 25 6 3.1544 -8.2109 -1.7694 26 6 1.9273 -8.5018 -0.9409 27 1 1.1800 -9.1484 -1.4009 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6248 -2.5571 0.8898 31 1 2.8719 -3.6043 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 3.1357 -6.1344 -0.0014 34 1 3.8344 -7.3704 1.0686 35 1 3.7016 -8.8450 2.0625 36 1 5.5537 -9.0922 0.4416 37 1 4.2352 -10.2196 0.0292 38 1 6.5121 -8.5191 -1.6337 39 1 6.2980 -7.4790 -3.8560 40 1 4.0724 -6.9087 -4.7402 41 1 2.0577 -7.3766 -3.4027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291884148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:49 Heat of formation + Delta-G solvation = -4.923492 kcal Electronic energy + Delta-G solvation = -21910.322904 eV Core-core repulsion = 18754.720975 eV Total energy + Delta-G solvation = -3155.601929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81319 -38.91343 -37.31534 -33.85708 -33.42849 -32.49912 -30.97750 -30.50206 -29.68163 -25.82722 -24.33432 -23.54491 -22.23211 -22.06963 -20.28457 -19.82042 -18.94645 -17.10128 -16.78764 -15.99923 -15.80096 -15.45515 -14.84246 -14.75262 -14.68026 -14.39588 -13.76681 -13.53902 -13.28487 -13.02715 -12.87887 -12.57797 -12.30042 -12.15742 -11.96548 -11.43711 -11.32874 -11.14286 -10.94268 -10.79505 -10.73109 -10.57332 -10.02878 -9.94835 -9.65366 -9.17018 -9.01230 -8.97804 -8.79256 -8.34632 -8.28342 -5.94875 -3.99036 1.22186 1.30453 3.10024 3.33462 3.38885 3.41880 3.45394 3.58957 3.82639 4.41344 4.48407 4.51753 4.65659 4.67384 4.90392 4.94263 5.00734 5.14862 5.16101 5.32149 5.37044 5.40222 5.43093 5.53194 5.61290 5.75136 5.78507 5.86876 5.98916 6.01220 6.08624 6.23700 6.26447 6.39409 6.44592 6.56624 6.77528 6.90136 6.91485 7.76139 7.87738 7.88205 8.08483 8.40213 8.77864 9.09609 9.64460 11.16153 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.003809 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.033863 B = 7350.163381 C = 7970.101981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.515 3.485 12 O -0.533 6.533 13 N -0.711 5.711 14 C 0.112 3.888 15 H 0.140 0.860 16 C -0.159 4.159 17 H 0.116 0.884 18 C -0.091 4.091 19 C -0.077 4.077 20 C -0.085 4.085 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.102 4.102 25 C -0.046 4.046 26 C -0.135 4.135 27 H 0.120 0.880 28 H 0.260 0.740 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.924 -21.734 -2.470 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.304 3.696 12 O -0.408 6.408 13 N -0.363 5.363 14 C 0.004 3.996 15 H 0.157 0.843 16 C -0.179 4.179 17 H 0.134 0.866 18 C -0.129 4.129 19 C -0.114 4.114 20 C -0.085 4.085 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.120 4.120 25 C -0.046 4.046 26 C -0.155 4.155 27 H 0.138 0.862 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.877 -21.551 -2.462 23.834 hybrid contribution 0.920 0.848 -0.176 1.263 sum 10.796 -20.703 -2.638 23.497 Atomic orbital electron populations 1.70011 1.06048 1.26444 1.50343 1.25019 0.94815 0.99208 0.95318 0.86542 0.80018 0.83861 0.77581 1.19758 1.21021 1.21009 1.21258 0.92962 0.90997 1.51199 0.92577 1.18902 0.93142 0.89331 0.98635 1.21870 1.00758 0.91831 1.02493 1.21583 0.88654 0.85437 0.73940 1.90657 1.14434 1.87532 1.48150 1.45686 1.09717 1.04351 1.76523 1.21684 0.97338 0.80362 1.00185 0.84286 1.23189 0.97915 1.01614 0.95178 0.86565 1.21333 0.91986 1.00982 0.98599 1.20646 0.99942 0.99400 0.91439 1.19803 0.92549 0.99643 0.96482 1.20951 0.97790 1.00114 0.94830 1.21123 0.97466 0.99337 0.96042 1.21149 0.92525 1.00168 1.00058 1.20938 0.98930 0.98121 0.94039 1.18889 0.92642 0.98848 0.94213 1.21773 0.98207 1.04351 0.91135 0.86227 0.93022 0.95798 0.95789 0.90259 0.90255 0.76607 0.91278 0.90562 0.90861 0.90444 0.86189 0.86218 0.86077 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 11 C 0.51 10.13 7.83 -10.99 -0.09 10.05 16 12 O -0.53 -12.63 15.55 5.56 0.09 -12.55 16 13 N -0.71 -10.58 4.72 -53.87 -0.25 -10.83 16 14 C 0.11 1.44 6.35 -67.99 -0.43 1.01 16 15 H 0.14 1.99 7.40 -51.93 -0.38 1.60 16 16 C -0.16 -1.55 6.22 -89.91 -0.56 -2.11 16 17 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.09 -0.81 5.86 -26.10 -0.15 -0.96 16 19 C -0.08 -0.63 5.84 -27.50 -0.16 -0.80 16 20 C -0.08 -0.87 5.52 -104.51 -0.58 -1.44 16 21 C -0.12 -1.15 9.69 -39.62 -0.38 -1.54 16 22 C -0.12 -1.20 10.05 -39.56 -0.40 -1.60 16 23 C -0.12 -1.31 10.05 -39.56 -0.40 -1.70 16 24 C -0.10 -1.21 9.76 -39.63 -0.39 -1.60 16 25 C -0.05 -0.52 4.64 -104.51 -0.49 -1.01 16 26 C -0.13 -1.46 6.02 -91.42 -0.55 -2.01 16 27 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.40 5.26 6.47 -40.82 -0.26 4.99 16 34 H 0.07 0.69 5.87 -51.93 -0.30 0.38 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.51 8.00 -51.93 -0.42 0.09 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.12 0.91 8.03 -52.49 -0.42 0.49 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -33.76 337.73 -10.59 -44.36 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.98 Total: 3.47 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -5.26 Total: -19.46 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.48 Total: -37.71 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.76 -10.59 -44.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291884148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.433 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds