Wall clock time and date at job start Tue Mar 31 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 119.99981 * 2 1 4 4 H 1.48503 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47272 * 299.99914 * 3 2 1 6 6 H 1.48507 * 109.47438 * 59.99900 * 3 2 1 7 7 C 1.37880 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99675 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47268 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46834 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00455 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99826 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00218 * 180.02562 * 13 11 10 15 15 H 1.09002 * 115.53103 * 350.58073 * 14 13 11 16 16 C 1.53045 * 117.45516 * 205.07021 * 14 13 11 17 17 H 1.09001 * 118.05683 * 144.51150 * 16 14 13 18 18 C 1.53652 * 116.99586 * 357.94893 * 16 14 13 19 19 C 1.53559 * 108.14830 * 249.99456 * 18 16 14 20 20 C 1.50884 * 108.60402 * 63.31870 * 19 18 16 21 21 C 1.38096 * 120.38619 * 135.92620 * 20 19 18 22 22 C 1.38264 * 119.92305 * 179.97438 * 21 20 19 23 23 C 1.38263 * 120.03853 * 0.02562 * 22 21 20 24 24 C 1.38264 * 120.04439 * 0.03618 * 23 22 21 25 25 C 1.38085 * 119.91542 * 359.95471 * 24 23 22 26 26 C 1.50888 * 120.39534 * 179.97438 * 25 24 23 27 27 H 1.09005 * 116.11517 * 57.82963 * 26 25 24 28 28 H 0.97004 * 120.00258 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47208 * 59.99714 * 9 7 2 30 30 H 1.09007 * 109.46848 * 299.99873 * 9 7 2 31 31 H 1.08999 * 109.46588 * 59.99952 * 10 9 7 32 32 H 1.08996 * 109.46571 * 299.99882 * 10 9 7 33 33 H 0.97009 * 120.00022 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.72986 * 9.65565 * 18 16 14 35 35 H 1.09004 * 109.72842 * 130.33123 * 18 16 14 36 36 H 1.08999 * 109.61696 * 183.05590 * 19 18 16 37 37 H 1.09001 * 109.60790 * 303.58587 * 19 18 16 38 38 H 1.08002 * 120.03662 * 359.96556 * 21 20 19 39 39 H 1.07990 * 119.98096 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.97526 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.04239 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1656 -6.1344 -0.0003 14 6 1.4332 -7.4031 -0.0003 15 1 0.3580 -7.3249 0.1611 16 6 2.1459 -8.6293 0.5748 17 1 1.5491 -9.3602 1.1204 18 6 3.5907 -8.4328 1.0595 19 6 4.5251 -9.1706 0.0897 20 6 4.4059 -8.5329 -1.2726 21 6 5.5356 -8.2693 -2.0218 22 6 5.4152 -7.6851 -3.2691 23 6 4.1652 -7.3646 -3.7656 24 6 3.0341 -7.6273 -3.0150 25 6 3.1544 -8.2109 -1.7694 26 6 1.9273 -8.5018 -0.9409 27 1 1.1800 -9.1484 -1.4009 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6248 -2.5571 0.8898 31 1 2.8719 -3.6043 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 3.1357 -6.1344 -0.0014 34 1 3.8344 -7.3704 1.0686 35 1 3.7016 -8.8450 2.0625 36 1 5.5537 -9.0922 0.4416 37 1 4.2352 -10.2196 0.0292 38 1 6.5121 -8.5191 -1.6337 39 1 6.2980 -7.4790 -3.8560 40 1 4.0724 -6.9087 -4.7402 41 1 2.0577 -7.3766 -3.4027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291884148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:49 Heat of formation + Delta-G solvation = -24.379956 kcal Electronic energy + Delta-G solvation = -21911.166600 eV Core-core repulsion = 18754.720975 eV Total energy + Delta-G solvation = -3156.445625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.74409 -40.30668 -38.30497 -35.58790 -34.82510 -33.71503 -32.78697 -31.46800 -30.45630 -27.83383 -25.12586 -24.56209 -23.87291 -22.84608 -21.68733 -21.17838 -19.74240 -18.90763 -17.82317 -17.61497 -16.78951 -16.54587 -16.42009 -16.34486 -15.69448 -15.60364 -14.98770 -14.53376 -14.37218 -14.18397 -14.07483 -13.85602 -13.70334 -13.25139 -13.24178 -12.86325 -12.73213 -12.45906 -12.29265 -12.18781 -11.96498 -11.69041 -11.62626 -11.49622 -11.29690 -10.94608 -10.70814 -10.58513 -9.98611 -9.62433 -9.28486 -8.18826 -6.33007 0.42464 0.50549 1.41691 1.43247 1.56585 1.61136 2.12275 2.43409 2.68867 2.96088 3.14246 3.58709 3.71893 3.80228 3.89965 3.95515 4.11053 4.20939 4.24374 4.41385 4.43705 4.47608 4.50488 4.59281 4.62344 4.74634 4.82235 4.92734 5.04467 5.05442 5.10966 5.17541 5.27598 5.37423 5.46435 5.54901 5.60650 5.62924 5.66142 5.77892 5.83839 6.14464 6.16513 6.52268 6.84959 7.28952 7.37330 8.94165 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.003809 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.033863 B = 7350.163381 C = 7970.101981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.044 3.956 10 C -0.119 4.119 11 C 0.516 3.484 12 O -0.585 6.585 13 N -0.686 5.686 14 C 0.073 3.927 15 H 0.118 0.882 16 C -0.129 4.129 17 H 0.139 0.861 18 C -0.094 4.094 19 C -0.072 4.072 20 C -0.089 4.089 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.062 4.062 26 C -0.127 4.127 27 H 0.128 0.872 28 H 0.263 0.737 29 H -0.018 1.018 30 H -0.016 1.016 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.501 -22.852 -1.863 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.006 3.994 10 C -0.159 4.159 11 C 0.305 3.695 12 O -0.465 6.465 13 N -0.337 5.337 14 C -0.033 4.033 15 H 0.136 0.864 16 C -0.148 4.148 17 H 0.156 0.844 18 C -0.131 4.131 19 C -0.109 4.109 20 C -0.089 4.089 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.062 4.062 26 C -0.146 4.146 27 H 0.145 0.855 28 H 0.072 0.928 29 H 0.000 1.000 30 H 0.003 0.997 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.248 0.752 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.512 -22.728 -1.856 26.506 hybrid contribution -0.189 1.103 -0.405 1.190 sum 13.323 -21.625 -2.261 25.500 Atomic orbital electron populations 1.70185 1.08311 1.27774 1.51457 1.26128 0.95719 1.03913 0.94551 0.85266 0.79263 0.78043 0.77627 1.17677 1.20589 1.20470 1.21721 0.93936 0.91588 1.50838 0.90740 1.18675 0.93601 0.92321 0.94760 1.21627 0.99404 0.90301 1.04524 1.21287 0.87833 0.86482 0.73873 1.90640 1.16481 1.88243 1.51105 1.45308 1.10111 1.03852 1.74435 1.21776 0.96688 0.80380 1.04445 0.86426 1.23371 0.98468 0.98651 0.94358 0.84361 1.21421 0.91056 1.00637 1.00025 1.20686 1.00929 0.99516 0.89787 1.20096 0.92055 0.99233 0.97527 1.21305 0.98784 0.99239 0.94548 1.21439 0.97665 0.98674 0.96512 1.21346 0.92829 1.00573 1.00534 1.21024 0.98923 0.99405 0.94975 1.19002 0.93414 0.99654 0.94172 1.21798 0.98215 1.02499 0.92130 0.85470 0.92818 0.99983 0.99730 0.87817 0.88375 0.75239 0.92400 0.88358 0.88819 0.89356 0.83639 0.84134 0.85327 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.11 13.29 21.45 0.28 -59.83 16 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 4 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 8 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.52 4.26 29.85 0.13 2.65 16 10 C -0.12 -5.01 5.64 29.85 0.17 -4.85 16 11 C 0.52 21.03 7.83 87.66 0.69 21.72 16 12 O -0.59 -29.61 15.55 -3.03 -0.05 -29.65 16 13 N -0.69 -20.39 4.72 -442.72 -2.09 -22.48 16 14 C 0.07 1.91 6.35 44.95 0.29 2.19 16 15 H 0.12 3.57 7.40 -2.39 -0.02 3.55 16 16 C -0.13 -2.23 6.22 -10.33 -0.06 -2.30 16 17 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 18 C -0.09 -1.34 5.86 31.00 0.18 -1.16 16 19 C -0.07 -0.90 5.84 30.09 0.18 -0.73 16 20 C -0.09 -1.58 5.52 -19.79 -0.11 -1.69 16 21 C -0.12 -1.96 9.69 22.24 0.22 -1.75 16 22 C -0.13 -2.19 10.05 22.28 0.22 -1.97 16 23 C -0.13 -2.81 10.05 22.28 0.22 -2.59 16 24 C -0.13 -2.97 9.76 22.24 0.22 -2.75 16 25 C -0.06 -1.34 4.64 -19.79 -0.09 -1.44 16 26 C -0.13 -2.64 6.02 -11.31 -0.07 -2.70 16 27 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 29 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 30 H -0.02 -1.01 8.10 -2.38 -0.02 -1.03 16 31 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 32 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 33 H 0.41 10.30 6.47 -92.70 -0.60 9.70 16 34 H 0.06 0.98 5.87 -2.39 -0.01 0.97 16 35 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.09 0.84 8.00 -2.39 -0.02 0.82 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.15 1.58 8.03 -2.91 -0.02 1.56 16 39 H 0.14 1.81 8.06 -2.92 -0.02 1.78 16 40 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.11 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -77.12 337.73 3.47 -73.65 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.43 Total: 20.00 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 2.87 Total: -28.48 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.80 Total: -82.31 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.05 Total: -29.65 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -77.12 3.47 -73.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291884148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.273 kcal (2) G-P(sol) polarization free energy of solvation -77.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds